Curator Dashboard

Software interface for interacting with brain atlases. Python client to brain atlas framework that integrates brain parcellations and reference spaces at different spatial scales, and connects them with broad range of multimodal regional data features. It aims to facilitate programmatic and reproducible incorporation of brain parcellations and brain region features from different sources into neuroscience workflows.

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• 1 year ago - by Anonymous

Integrated Cell Browser features integrated single-cell RNA sequencing (scRNA-seq) and single cell ATAC-seq data from human donor-specific pancreatic islet cells. The browser enables detailed interrogation of single cell RNA-seq and single cell ATAC-seq data through intuitive visualizations. Within the single-cell browser, users can first identify and filter single-cell datasets and dataset collections. Users can visualize interactive plots of cell type clusters, gene expression, cell type abundance, and marker gene expression. Donors and their data were provided by external programs described here.

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• dkNET
• 1 year ago - submitted by Ko-Wei Lin

Knowledge Graph developed for the study of the human pancreas. By leveraging large language models (LLMs) and diverse data types, PanKgraph enables users to uncover biological connections and insights into diabetes pathogenesis. Previously disjointed entities such as genes, single nucleotide polymorphisms (SNPs), and pancreatic expression quantitative trait loci (eQTLs) can now be explored and connected in innovative ways.

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• dkNET
• 1 year ago - submitted by Ko-Wei Lin

Centralized knowledge base of the human pancreas for diabetes research. Integrates diverse type 1 diabetes (T1D) datasets with expert-curated knowledge in centralized, open-source data hub. Since users will ultimately be able to contribute their own data, this will be repository for reproducible, collaborative research within the pancreas and T1D realms.

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• dkNET
• 1 year ago - submitted by Ko-Wei Lin

Resource that integrates biomedical terms and biomedical relationships. This collection is curated from PubMed abstracts and biomedical repositories, offering unparalleled wealth of knowledge for researchers and practitioners in the field. The database is coupled with RESTful APIs and user-friendly web interface.

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• dkNET
• 1 year ago - submitted by Ko-Wei Lin

Database that uses knowledge graph to consolidate genomic datasets and annotations. Graph database for researchers to explore and investigate human genome, epigenome, transcriptome, and 4D nucleome. Genomic entities and relationships are represented as diverse nodes and edges with properties.

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• dkNET
• 1 year ago - submitted by Ko-Wei Lin

Core provides services in Assay Development, Assays Experimental Design, Immune Monitoring, Cytokine Assays, ELISA, multiplex Flow based and Luminex based Bead Arrays, Project Based Flow Cytometry and Data Analysis.

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• 1 year ago - submitted by Rafal Pacholczyk

Software tool as framework for knowledge graph construction and the current 4 KGs. Used to extract and integrate diverse knowledge about microbes from variety of structured and unstructured sources.

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• 1 year ago - submitted by Brook Santangelo

VAHTS DNA Clean Beads Vazyme, N411 is based on SPRI Solid Phase Reverse Immobilization and is applicable for DNA purification and fragment size selection during the preparation of next generation sequencing library.

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• 1 year ago - submitted by Zhen Liu

VAHTS DNA Clean Beads Vazyme, N411 is based on SPRI Solid Phase Reverse Immobilization and is applicable for DNA purification and fragment size selection during the preparation of next generation sequencing library.

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• 1 year ago - submitted by Zhen Liu

Qubit dsDNA HS Assay Kit Invitrogen Q32854.

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• 1 year ago - submitted by Zhen Liu

KAPA HiFi Hotstart Ready Mix Roche KK2602. KAPA HiFi DNA Polymerase is extensively used in next-generation sequencing NGS library amplification.

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• 1 year ago - submitted by Zhen Liu

Exonuclease I NEB M0293L. Thermolabile Exonuclease I

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• 1 year ago - submitted by Zhen Liu

RNase inhibitor NEB M0314L. RNase Inhibitor, Murine, specifically inhibits RNases A, B and C.

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• 1 year ago - submitted by Zhen Liu

Pepsin Sigma P7000

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• 1 year ago - submitted by Zhen Liu

SSC Ambion AM9770

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• 1 year ago - submitted by Zhen Liu

ssDNA reagent Invitrogen Q10212

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• 1 year ago - submitted by Zhen Liu

99.9 percentage, suitable for immunofluorescence, HPLC

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• 1 year ago - submitted by Zhen Liu

VAHTS DNA Clean Beads Vazyme, N411 is based on Solid Phase Reverse Immobilization and is applicable for DNA purification and fragment size selection during the preparation of next generation sequencing library.

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• RRID
• 1 year ago - submitted by Zhen Liu

Tissue-Tek O.C.T. Compound is used to quickly embed fresh tissue specimens for frozen sections using a cryostat. Tissue-Tek O.C.T. Compound is a formulation of clear, water-soluble glycols and resins, providing a solid matrix to encapsulate tissue specimens and bond to the Specimen Holder for consistent sectioning in a cryostat working temperature of -10 degrees celsius and below.

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• 1 year ago - submitted by Zhen Liu