Curator Dashboard

Open source resource of manually curated and expert reviewed infant brain segmentations hosted on OpenNeuro.org. and OSF.io. Anatomical MRI data was segmented from 71 infant imaging visits across 51 participants, using both T1w and T2w images per visit. Images showed dramatic differences in myelination and intensities across 1–9 months, emphasizing the need for densely sampled gold-standard segmentations across early life. This dataset provides a benchmark for evaluating and improving pipelines dependent upon segmentations in the youngest populations. As such, this dataset provides a vitally needed foundation for early-life large-scale studies such as HBCD.

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• dkNET
• 1 month ago - submitted by Maryann Martone

Software graphical and containerized spatial proteomics workflow. End-to-end containerized spatial proteomics analysis workflow with QuPath integration. Consists of cell segmentation, batch correction, unsupervised clustering, validation of clusters on the image, and cell type clustering results visualization.

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• RRID
• 1 month ago - submitted by Ka Yee Yeung

Software R package to identify mutually exclusive mutations. Used to identify mutually exclusive genomic events. Implements exact and approximate computations of the Poisson-Binomial.

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• RRID
• 1 month ago - by Anonymous

Device for 2 kHz eye/gaze-tracking solution supporting both monocular and binocular tracking with single mechanical configuration. Interchangeable lenses support tracker distances from 60 cm to over 160 cm for fMRI applications. TRACKPixx3 does not require a dedicated PC to process eye images and generate gaze information. All image processing is performed within TRACKPixx3 hardware. Gaze data can be logged within the TRACKPixx3 and retrieved by the testing PC with a simple low-latency USB interface. TRACKPixx3 video feed can be accessed directly through a console display for real-time visualization and adjustment of the tracker. These video feeds can also be accessed through the USB interface for remote control of the TRACKPixx3.

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• RRID
• 1 month ago - submitted by Lindsey Fraser

Software application for vendor-neutral, open-source acquisition and reconstruction protocols for fully harmonized multi-site functional MRI studies.

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• RRID
• 1 month ago - by Anonymous

database of the research

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• RRID
• 1 month ago - by Anonymous

Software framework that adapts and extends existing methods and knowledge to study cell-cell communication in single-cell, spatially-resolved, and multi-modal omics data. All-in-one framework for cell-cell communication inference.

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• RRID
• 1 month ago - by Anonymous

Software package to facilitate inference of tree-shaped trajectories from single-cell data. These include linear, bifurcating, multifurcating, and other tree-shaped trajectories. Totem uses Slingshot to find linear curves through the lineages of the tree.

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• RRID
• 1 month ago - by Anonymous

Private research university in Lahore, Punjab, Pakistan. Founded in 1985, it is ranked as one of the most prestigious modern universities in Pakistan. In 1984, Syed Babar Ali recognized the shortage of qualified managers in the country.

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• RRID
• 1 month ago - submitted by Edyta Vieth

LUMS High-Performance Computing (HPC) facility is specialized computational research core providing high-density processing power and large-scale data storage. It serves as a central hub for faculty and students to execute data-intensive simulations, machine learning workflows, and complex modeling across various scientific disciplines.

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• SciCrunch
• 1 month ago - by Anonymous

Software lightweight Python framework and command-line tool for organizing, processing, and managing neuroimaging-clinical datasets, designed to make studies more reproducible and adhere to FAIR data principles (Findable, Accessible, Interoperable, Reusable). Provides standardized workflow to handle raw data (like DICOMs), apply containerized processing pipelines (e.g., fMRIPrep), extract analysis-ready features (IDPs), and track processing status, extending the Brain Imaging Data Structure (BIDS) standard for both imaging and clinical data. Includes three components: protocol for data wrangling to standardize generation of analysis-ready datasets; specification for dataset organization that extends the Brain Imaging Data Structure (BIDS) standard; command-line interface and Python package that provide user-friendly tools for applying the framework.

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• RRID
• 1 month ago - submitted by Maryann Martone

Circular plot used to visualize flows, relationships, or connections between different groups or entities, showing the strength (weight) of these links with arc sizes and colors, ideal for network analysis, migration data, or interaction matrices.

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• RRID
• 1 month ago - by Anonymous

Durable, modular, upright compound microscope known for clinical, educational, and research use, offering brightfield and phase contrast, UIS optics, and ergonomic features for comfortable, long-term observation, making it popular for routine pathology (like Mohs surgery) and teaching labs. As an earlier BX model, it's reliable, configurable with different heads (binocular, trinocular) and accessories, and often updated with modern LED lighting, providing excellent cost-performance for detailed specimen viewing.

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• RRID
• 1 month ago - by Anonymous

Compact, manual rotary microtome designed for preparation of thin sections of human and animal tissue samples of varying hardness, as far as they are suitable for manual cutting. Microtome for parafin sectioning. Can be used for all applications as diagnostic aid related to in vitro examination within the histopathological process.

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• RRID
• 1 month ago - by Anonymous

Represents central facility and does not operate for profit, engaging in academic research collaborations and service provision on collaborative basis. Provides infrastructure for all kinds of sequencing, gene mapping and whole genome association studies in complex diseases as well as the validation of copy number variations.

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• RRID
• 2 months ago - by Anonymous

Core provides expertise on study design and statistical analysis. Devoted to developing and understanding ways to derive scientific inferences from quantitative data and to developing methods for achieving this aim. The staff are highly trained in this field and experienced in all of the specialized areas of statistical techniques including clinical trials methodology, survival analysis, epidemiologic methods, analysis of genomics data, statistical genetics, methods for diagnostic medicine, health services research, survivorship, evidence-based medicine and psychometric methods.

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• RRID
• 2 months ago - submitted by Patrick Badua

Web platform for sharing machine learning models and data science applications. Users can interact with the deposited models and applications through a public URL or fetch the models and apps to run them locally on their own computer.

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• RRID
• 2 months ago - by Anonymous

Software pipeline for filtering sequence errors found in formalin-fixed and paraffin-embedded (FFPE) samples.

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• RRID
• 2 months ago - by Anonymous

Software tool to convert the .eeg/.qle data recorded by Quanlan devices into .edf format.

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• RRID
• 2 months ago - submitted by feng feng

Fully automated, high-content imaging and analysis platform designed for high-throughput biological screening and detailed cellular phenotyping. It’s widely used in research settings for applications that require both high resolution and high throughput microscopy across a range of complex biological models.

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• RRID
• 2 months ago - by Anonymous