Curator Dashboard

Code to conduct combinatorial barcoding. scRNA-seq-compatible tracer for identifying clonal relationships.

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• 1 month ago - submitted by Edyta Vieth

Software tool that harnesses natural genetic variation to determine the sample identity of each droplet containing a single cell (singlet) and detect droplets containing two cells (doublets). Genetic multiplexing of barcoded single cell RNA-seq.

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• 1 month ago - submitted by Edyta Vieth

Software Python package for single-cell chromosome contact data analysis. It includes the identification of cell types (clusters), loop calling in cell types, and domain and compartment calling in single cells. Facilitates visualization and comparison of single-cell 3D genomes.

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• 1 month ago - submitted by Edyta Vieth

EM Core Facility offers instrumentation and training for range of Electron Microscopy applications. Instrumentation includes Thermofisher Tundra cryo-TEM, Tecnai T12 TEM, Magellan 400 SEM, JEOL JEM-2200FS, Vitrobot Mark IV, (cryo)microtomes, and other auxiliary equipment.

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• 1 month ago - by Anonymous

Particle analysis system that uses Nanoparticle Tracking Analysis (NTA) to measure the size distribution, concentration, and aggregation of nanoparticles (10-2000 nm) in liquid, crucial for research in exosomes, drug delivery, protein aggregation, and colloidal systems. It visualizes individual particles' Brownian motion with lasers and a camera, calculating hydrodynamic diameter and concentration, and includes fluorescence detection for specific labeled particles.

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• 1 month ago - by Anonymous

Upright light microscope used in research, education, and routine lab work for detailed sample observation, documentation, and analysis in fields like pathology, histology, cytology, and materials science, supporting various techniques like brightfield, fluorescence, and polarization microscopy for capturing sharp digital images.

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• 1 month ago - by Anonymous

Software application for topic modeling with latent Dirichlet allocation.

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• 1 month ago - submitted by Seppe De Winter

Software library for nested containment list data structure for interval overlap queries, like interval tree. It is a static interval-tree that is fast for both construction and lookups.

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• 1 month ago - submitted by Seppe De Winter

Software standardized framework for creating, sharing, and reusing cognitive and clinical assessments. Standardized form generation and data collection schema to harmonize results by design across projects. Used for enhancing research reproducibility through standardized survey data collection.

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• 1 month ago - submitted by Maryann Martone

Open source software ecosystem designed to facilitate harmonization, search, and discovery of neuroimaging study cohorts across decentralized datasets. Allows researchers to find participants across different studies based on specific clinical, demographic, and imaging criteria without needing to merge all the original data into a single central database. Provides tools to connect a local neuroimaging dataset with others in decentralized framework using linked data principles.You can contribute to Neurobagel by enhancing its tools (annotation, querying), improving documentation, adding new features/models, fixing bugs, or sharing your own data/expertise to help researchers find and harmonize brain imaging cohorts through standardized metadata and knowledge graphs.

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• 1 month ago - submitted by Maryann Martone

Shipping Dewar Positional Cooling Device (SDPCD) is 3-D printable vertical cooling device that can assist cryopreservation with various standard cooling rates by use with existing standard nitrogen vapor shipping dewars for on-site sperm cryopreservation for aquatic species.Device could hold 22 French straws (0.25-mL or 0.5-mL) and a quick-release ring design could eject straws directly into a canister inside a dewar by pressing a button after freezing. The final prototypes produced cooling rates of 1 to 68°C/min for 0.25-mL straws, and 3 to 37°C/min for 0.5-mL straws with a material cost of 3.5 USD for a single device

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• 1 month ago - by Anonymous

Software video analysis and modeling tool developed within the Open Source Physics (OSP) Java framework. Allows frame-by-frame tracking of anatomical landmarks and articulated structures from video recordings, enabling the extraction of time-dependent kinematic variables such as displacement, velocity, and acceleration. Tracker is well suited for biomechanical analyses of articulated systems, as it supports joint-based rotations, reference-frame definition, and the export of quantitative motion data for further post-processing.

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• 1 month ago - by Anonymous

Software program from Microchip, serving as a comprehensive, expandable platform for developing Microchip microcontroller applications, with many integrated tools like MPLAB Code Configurator (MCC) and MPLAB XC Compilers (free versions). Incorporates tools to discover, configure, develop, debug and qualify embedded designs for most of microcontrollers and digital signal controllers. MPLAB X IDE works seamlessly with the MPLAB development ecosystem of software and tools.

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• 1 month ago - by Anonymous

Software MATLAB-based application for spike sorting multi-electrode array (MEA) recordings. Used for efficient, reproducible spike sorting in high-throughput neuronal culture experiments. SAMS performs batched automated spike sorting processes and also allows the users to review and correct any clusters or spike assignments.

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• 1 month ago - submitted by Raymond Doudlah

College of American Pathologists-accredited biorepository that collects, processes, securely stores, and distributes human biospecimens (tissues and blood products) for medical research. Tissue Bank that is a CAP-accredited biorepository supporting four human consent programs. Provides fresh and frozen tissue and biological materials with known preanalytical variables to researchers as well as provides specialized processing and imaging services.

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• 1 month ago - submitted by Karlie Sippel

MRI scanner as medical imaging system used for detailed scans of the brain, spine, joints, heart, and other organs, focusing on high image quality, fast scans (using technologies like HyperSense), enhanced patient comfort (with Silent Suite for noise reduction and free-breathing options), and operational efficiency, making it suitable for diverse clinical needs like neuroimaging, orthopedics, and cardiovascular studies. It's designed to handle a broad range of applications and improve workflow, even for patients with MRI-conditional metal implants.

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• 1 month ago - submitted by Ariel Graff

Platform provides suite of powerful tools to explore, visualize, and make sense of complex data that can help accelerate discoveries in melanoma research. By integrating data from multiple studies, including transcriptiomics, single-cell RNA-Seq, and proteomics (with more to come), MelOD allows for comprehensive examination of the molecular landscape of melanoma.

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• 1 month ago - by Anonymous

Duplicate record. A simple and easy-to-use electrophysiological data analysis toolkit developed by Quanlan Technology for beginner neuroscience iresearchers and clinical electrophysiologists.

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• 1 month ago - submitted by huayun wu

Software electrophysiological data analysis toolkit developed by Quanlan Technology for beginner neuroscience researchers and clinical electrophysiologists.

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• 1 month ago - submitted by huayun wu

Open data resource for mapping brain development and its associations with mental health. Integrates data from 5 large studies of brain development in youth from three continents (N = 6,346). Bifactor models were used to create harmonized psychiatric phenotypes, capturing major dimensions of psychopathology. Neuroimaging data were carefully curated and processed using consistent pipelines in a reproducible manner.

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• 1 month ago - submitted by Maryann Martone