Curator Dashboard

Core offers the ability to perform both targeted (including stable isotope tracing studies) and untargeted metabolomics and lipidomics experiments using liquid- and gas-chromatography mass spectrometry (LCMS/MS and GCMS) on a fee-for-service basis. Offers expertise to assist with every stage of the metabolomics/ lipidomics experimental pipeline, including experimental design, method development, data acquisition and processing, data analysis and interpretation. Offers training on data analysis software including both open-source and vendor proprietary analysis software. Offers access to specialized equipment required for metabolomics/ lipidomics sample extraction and preparation, including a Cryomill and Bead Beater for homogenization of tumors, tissue, stool and whole organisms, and a liquid-handling robot for large scale plasma extractions.

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• 8 months ago - submitted by Caroline Chidley

Software multimodal AI-models to estimate Tyrosine Kinase Inhibitors and Immune Checkpoint Inhibitors therapy response across renal cell carcinoma.

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• 8 months ago - by Anonymous

Software application as deep learning model leveraging large-scale proteomics, molecular graphs, and fingerprints to enhance prediction of synergistic effects in anti-cancer drug combinations.

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• 9 months ago - submitted by Bundit Boonyarit

Scanning Electron Microscope advanced DualBeam for ultra-high resolution imaging, analysis and fabrication at the nanoscale. Helios NanoLab 600i builds on the success of FEI’s winning DualBeam series offering advances in ion beam, electron beam, patterning and range of features to make milling, imaging, analysis and sample preparation down to nanoscale.

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• 9 months ago - submitted by Edyta Vieth

Portal stores health data from participants from across the United States. Provides interactive Data Browser where anyone can learn about the type and quantity of data that All of Us collects. Users can explore aggregate data including genomic variants, survey responses, physical measurements, electronic health record information, and wearables data.

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• dkNET
• 9 months ago - submitted by Ko-Wei Lin

Multidisciplinary data generation project which aims to create and share multimodal dataset optimized for artificial intelligence research in type 2 diabetes. At each release of the AI-READI dataset, two sets will be made available: public access and controlled access set. The public set will be stripped of Protected Health Information (PHI) as well as information related to the sex and race/ethnicity of the participants.

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• dkNET
• 9 months ago - submitted by Ko-Wei Lin

Software tool for local ancestry and admixture inference. Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference.

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• 9 months ago - by Anonymous

Software for scientific research and development. ELN captures and manages experimental data, while Data Discovery Platform enables users to explore, analyze, and visualize that data to gain insights.

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• 9 months ago - by Anonymous

SPARC data structure is consistent file structure and naming convention, based on the Brain Imaging Data Structure (BIDS) to ensure that the diverse types of data in SPARC is organized in similar manner.

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• 9 months ago - submitted by Anita Bandrowski

Genome-editing facility with the mission to provide low-cost, expeditious and collaborative genome-engineering services to St. Jude investigators. Core provides expertise and infrastructure to educate, assist, expedite and perform established and emerging technologies.

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• 9 months ago - submitted by Edyta Vieth

Web tool for interactive qPCR data analysis. Enables researchers to process, interpret, and visualize their qPCR data. Web-based Shiny application that requires no local installation.

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• 9 months ago - by Anonymous

Software Python package for imputation, consistent segmentation, statistical analysis, and visualization of copy number profiles from heterogeneous datasets.

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• 9 months ago - submitted by Adam Streck

Open source software tool developed in C# programming language on the .NET/Mono platform that allows the tool to run on Windows, Macintosh OS X, Linux Ubuntu operating systems. Allows to download or capture data from several medical device interfaces such as Datex AS3 S/5 Anesthesia, Philips Intellivue, GE Dash, Mindray, Spacelabs, Draeger Infinity, Draeger HL7 patient monitors, GE Engstrom, Draeger (Medibus), Maquet (Servo-i & Flow-i), Puritan Bennett ventilators, Covidien BIS Vista cerebral monitor, Fresenius Agilia, Alaris Carefusion, BBraun Spacecom syringe and volumetric pumps, Roche Cobas ASTM ABG analyzers. Requires Visual Studio 2022, .NET 8 or Visual Studio for Mac to compile. Android version requires Xamarin Studio, Android SDK to compile. Support for capture from other monitors is planned in future.

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• 9 months ago - by Anonymous

Health tech company specializing in AI-based neuroimaging software used by physicians in clinical diagnosis and treatment. The company's platform uses AI to create advanced images from non-contrast CT, CT angiography, CT perfusion, and MRI diffusion and perfusion scans. They provide the RapidAI software platform, which uses AI to analyze medical images for conditions like stroke and aneurysm and it requires paid subscription.

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• 9 months ago - by Anonymous

Software function as Matlab implementation of the TFA as specified in the White Paper (2015). An example of use on the supplied data (tfa_sample_data.txt) is given in tfa_demo.m and results are reported at the end of this report.

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• 9 months ago - by Anonymous

Open-source, cross-platform FTP application, consisting of FileZilla Client and FileZilla Server. Clients are available for Windows, Linux, and macOS. Both server and client support FTP and FTPS (FTP over SSL/TLS), while the client can in addition connect to SFTP servers. Used to transfer files between local computer and remote server. It facilitates uploading and downloading files, making it popular for managing website files and web hosting.

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• 9 months ago - submitted by Jinhao Bi

MobaXterm is your ultimate toolbox for remote computing. In a single Windows application, it provides loads of functions that are tailored for programmers, webmasters, IT administrators and pretty much all users who need to handle their remote jobs in a more simple fashion.

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• 9 months ago - submitted by Jinhao Bi

Software tool to discrete two molecules onto orthogonal grids and performs global scan of translational and rotational space.

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• 9 months ago - submitted by Jinhao Bi

Software tool for fast and sensitive comparisons of large structure sets. Used for comparisons of large protein structure sets, supporting monomer and multimer searches, as well as clustering. It runs on CPU, supports GPU acceleration for faster searches, and optionally allows ultra-fast and sensitive comparisons directly from protein sequence inputs using a language model, bypassing the need for structures.

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• 9 months ago - submitted by Jinhao Bi

Software package contains deep learning models and related scripts for RoseTTAFold.Used for accurate prediction of protein structures and interactions using 3-track network.

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• 9 months ago - submitted by Jinhao Bi