Curator Dashboard

Software toolkit for quantitative detection of DNA methylation from nanopore sequencing data without raw signals.

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• 7 months ago - submitted by Zhixing Feng

the Genome Sequence Archive for Human database

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• 7 months ago - submitted by Qingyuan Wang

Algorithm to align cells along differentiation trajectories. Models trajectories of differentiating cells by treating cell fate as probabilistic process and leverages entropy to measure cell plasticity along the trajectory. Generates high-resolution pseudo-time ordering of cells and, for each cell state, assigns probability of differentiating into each terminal state.

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• 7 months ago - submitted by Qingyuan Wang

Data analysis resource and repository for biological data related to circadian rhythms, sharing public data from over 10,000 experiments (in 2025). The main features of BioDare2 are: fast analysis of rhythmic data (rhythm detection and period, phase, amplitude), timeseries processing, attractive visualizations, simple data description, data sharing with permalinks, easy data uploads and a modern UI.

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• 7 months ago - submitted by Andrew Millar

Software repository contains code for Inference of T2D metabolic subphenotypes (MuscleIR, Beta-cell Function, Incretin Effect, Hepatic IR), Identification of dominant metabolic subphenotype, Feature extraction from glucose tiemseries, Extraction of reduced representation of glucose tiemseries,Visualization of metabolic phenotypes based on various glucose-related metrics,Concordance between CGM and Venous glucose values from at home and at clinical setting, Classification of metabolic subphenotypes.

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• dkNET
• 7 months ago - submitted by Ko-Wei Lin

Software tool as multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data. Integrates multimodal large language models (LLMs) with specialized computational tools to transform weeks-long analysis tasks into minutes of automated processing. Enables autonomous deep research through integrated capabilities, including dynamic code generation for complex analytical workflows, visual reasoning for interpreting spatial patterns, real-time retrieval of relevant peer-reviewd scientific literature, and synthesis of comprehensive, actionable reports.

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• dkNET
• 7 months ago - submitted by Ko-Wei Lin

Artificial Intelligence (AI)-powered website, which provides user-friendly open access analysis of extensive ChemPerturb-seq dataset.

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• dkNET
• 7 months ago - submitted by Ko-Wei Lin

Imaging facility for intravital microscopy. Facility equipment includes widefield, confocal, and multiphoton microscopes. Additional tools, such as laser ablation systems, allow us to probe vascular events such as thrombosis in fine detail. We also have tools for measurement of vascular perfusion, such as full-field laser speckle and laser doppler.

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• SciCrunch
• 7 months ago - submitted by Edyta Vieth

Flexible modeling language that allows you to author schemas in YAML that describe the structure of your data. Additionally, it is framework for working with and validating data in variety of formats (JSON, RDF, TSV), with generators for compiling LinkML schemas to other frameworks.Framework that simplifies the process of authoring, validating, and sharing data.

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• 7 months ago - by Anonymous

Laboratory instrument intended for use in clinical care and sports medicine applications. Provides measurements of glucose in whole blood, plasma or serum, and of L-lactate in whole blood, plasma, or cerebrospinal fluid (CSF). In whole blood or plasma, glucose and L-lactate can be measured simultaneously.

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• dkNET
• 7 months ago - submitted by Dakota Deiwert

Software pipeline designed to streamline dataset generation for cryogenic electron microscopy (cryoEM)-based atomic model building. Supports large-scale AI training and benchmarking by providing standardized tools for data retrieval, preprocessing, labeling, and quality control. Enables flexible configurations for diverse biomolecular structures, improves modeling reproducibility, and facilitates retraining of AI models such as U-Net and CryoREAD. Python workflow used to curate cryoEM datasets for AI-driven structural biology.

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• 7 months ago - submitted by Qibo Xu

Core provides training and expertise on culturing human pluripotent cells and their downstream derivatives.

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• 7 months ago - submitted by hCTO Core

Med Associates software tool to automatically create graph of cystometrigram of exported data from MED-CMG. Analysis of data is made possible with readouts of bladder pressure, infusion pump, and scale traces to identify void and non-void contractions.

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• 7 months ago - by Anonymous

Med Associates Inc. data acquisition software for recording cystometrigrams from small laboratory animals, such as rats or mice.

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• 7 months ago - by Anonymous

Software package for recording and analysis developed by iWorx. LabScribe has intuitive, user-friendly interface for setting up acquisition screens, calibrating signals and analyzing data. Up to 128 channels of data can be displayed simultaneously at sampling rates as high as 100,000 samples/second.

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• 7 months ago - by Anonymous

Software package for acquisition and device control for advanced research applications. Nikon’s flagship software package features fully automated image acquisition, advanced device control and powerful analysis and visualization tools.

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• 7 months ago - by Anonymous

Comprehensive multi-species platform for neuroscience teams to understand brain cells and anatomy. Brain Knowledge Platform includes catalog of relevant data and projects, as well as visualization tools for understanding brain cell types.

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• 7 months ago - submitted by Carol Thompson

Software Napari plugin for quantifying membrane-associated periodicity and periodic co-localization in super-resolution microscopy images. It uses autocorrelation and cross-correlation analysis to provide unbiased metrics of periodicity and spatial shifts between channels.

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• 7 months ago - submitted by Sam Kris Vanspauwen

Facility offers sample preparation, visualization and analysis for high resolution 3D reconstruction of frozen-hydrated proteins and macromolecular complexes. Facility is endowed with Thermofisher Scientific Tundra cryo-electron microscope, Vitrobot Mark IV cryo-plunger, Pelco easyGlow glow discharge unit, Denton DV 502B evaporator, and linux server dedicated to image processing.

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• SciCrunch
• 7 months ago - submitted by Edyta Vieth

Core is utilized in medical biotechnology and in research focused on mammalian cells. Offers analyzing of impact of new drugs and pharmaceuticals on individual cells in vitro. Provides sorting of cell populations with desired characteristics, including fluorescent dye-stained cell sorting (FACS) analysis of cell populations for presence of specific factors, e.g. introduced fluorescent protein, surface markers, DNA content determining the size, granulation and shape of animal and other cells.

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• SciCrunch
• 7 months ago - submitted by Edyta Vieth