Curator Dashboard

Software Python package for analyzing transcription factor binding patterns from deep learning model attribution scores. It identifies and clusters sequence motifs from contribution scores, maps them to DNA-binding domains, and provides comprehensive visualization tools for regulatory genomics analysis. Used for transcription factor motifs and instances discovery.

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• RRID
• 5 months ago - submitted by Seppe De Winter

Software Python project for whole slide image acquisition using a fluorescence microscope.

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• RRID
• 5 months ago - by Anonymous

Software DMC-Behavior Platform for standardized auditory decision-making tasks in head-fixed mice.

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• RRID
• 5 months ago - by Anonymous

Software napari plugin for flexible mapping of various features (cell bodies, axonal densities, injections sites, optical fibers, Neuropixels probes) to standardized reference spaces included in BrainGlobe. Used for anatomical mapping.

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• RRID
• 5 months ago - by Anonymous

Software application for media browsing, analysis and annotation. MATLAB GUI for browsing, analyzing and annotating time-synchronized media files.

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• RRID
• 5 months ago - by Anonymous

Web application to track the pose (position, orientation, size, wing- and leg positions) of multiple flies and maintain their identities throughout video. Outputs features (such as velocity, facing angle to other fly, and wing angles) useful for behavior analysis.

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• RRID
• 5 months ago - by Anonymous

Web application to create variety of automatic behavior classifiers. These classifiers input the animals' trajectories computed by tracking system, and they output time series indicating whether each animal is performing a given behavior in each video frame. Interactive machine learning for automatic annotation of animal behavior. Used to automatically compute interpretable, quantitative statistics describing video of behaving animals.

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• RRID
• 5 months ago - by Anonymous

Software application as lightweight reimplementation of some of the algorithms in the MEME suite in Python.

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• RRID
• 5 months ago - submitted by Seppe De Winter

Software Microbial Genome Processing toolkit. Flexible linked data framework for phenotype-genotype prediction of microbial traits using machine learning.

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• RRID
• 5 months ago - submitted by Mike Loomans

Software Python 3 library with good support for both reading and writing VCF. Reads and writes VCF files in Python.

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• RRID
• 5 months ago - by Anonymous

Web tool for merging csv files intended to be submitted to the open data commons databases including: ODC-TBI, ODC-SCI.

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• RRID
• 5 months ago - submitted by Anita Bandrowski

In vivo optical imaging system used in preclinical research to non-invasively monitor and quantify biological processes in living animals over time. Designed with innovative camera with patented coating that delivers high sensitivity 2D and 3D bioluminescence and fluorescence imaging capabilities.

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• 5 months ago - submitted by chris walsh

Text mining antibody specificity from literature. Helps researchers identify potential problems with antibody specificity. By mining the scientific literature and linking findings to Research Resource Identifiers (RRIDs), it provides alerts on antibodies that may yield unreliable results, supporting reproducibility in biomedical research.

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• dkNET
• 5 months ago - submitted by Ko-Wei Lin

Software application to apply limited-duration prevalence statistics from SEER*Stat to different population. The population would typically differ in year or geographic area. Enables users to project cancer prevalence data from SEER registries onto larger U.S. or other populations.

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• RRID
• 5 months ago - by Anonymous

Nucleic Acid Therapeutics Core accelerates the development of gene-targeted therapies by providing custom oligonucleotide synthesis, expert consultation, and platform for cross-disciplinary collaboration.

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• 5 months ago - submitted by Edyta Vieth

Core provides flexible systems with built-in support for biometric data collection, dyadic interactions, and reproducible protocols. Provides access to pipelines that support reproducibility, custom data annotation, and seamless handoff to analysis tools in R, Python, and more. Provides access to IRB-ready templates and documentation, along with tested participant safety protocols and secure data management systems.

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• RRID
• 5 months ago - submitted by Edyta Vieth

Software blazing fast toolkit to work with .hic and .cool files.

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• RRID
• 5 months ago - by Anonymous

Software R package to inference from interval data. Given collection of observed events and geometric association measure between events and explanatory intervals, CORE finds given number of explanatory cores that maximizes the explanation. Combinatorial optimization procedure with depth chosen from considerations of statistical significance.

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• RRID
• 5 months ago - submitted by Astrid Deschenes

Software application for Period Amplitude Analysis (PAA) for slow wave detection using eeglab.

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• NIF
• 5 months ago - by Anonymous

Software plugin for 'EEGLAB' MATLAB toolbox, which allows to whole-night sleep EEG using Artifact Subspace Reconstruction (ASR). Used to implement Artifact Subspace Reconstruction cleaning with whole-night sleep EEG. Automatic cleaning of whole-night sleep electroencephalogram using Artifact Subspace Reconstruction.

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• NIF
• 5 months ago - by Anonymous