Curator Dashboard

Software application for vendor-neutral, open-source acquisition and reconstruction protocols for fully harmonized multi-site functional MRI studies.

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• 1 month ago - by Anonymous

Software framework that adapts and extends existing methods and knowledge to study cell-cell communication in single-cell, spatially-resolved, and multi-modal omics data. All-in-one framework for cell-cell communication inference.

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• 1 month ago - by Anonymous

Software package to facilitate inference of tree-shaped trajectories from single-cell data. These include linear, bifurcating, multifurcating, and other tree-shaped trajectories. Totem uses Slingshot to find linear curves through the lineages of the tree.

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• 1 month ago - by Anonymous

Private research university in Lahore, Punjab, Pakistan. Founded in 1985, it is ranked as one of the most prestigious modern universities in Pakistan. In 1984, Syed Babar Ali recognized the shortage of qualified managers in the country.

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• 1 month ago - submitted by Edyta Vieth

LUMS High-Performance Computing (HPC) facility is specialized computational research core providing high-density processing power and large-scale data storage. It serves as a central hub for faculty and students to execute data-intensive simulations, machine learning workflows, and complex modeling across various scientific disciplines.

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• SciCrunch
• 1 month ago - by Anonymous

Software lightweight Python framework and command-line tool for organizing, processing, and managing neuroimaging-clinical datasets, designed to make studies more reproducible and adhere to FAIR data principles (Findable, Accessible, Interoperable, Reusable). Provides standardized workflow to handle raw data (like DICOMs), apply containerized processing pipelines (e.g., fMRIPrep), extract analysis-ready features (IDPs), and track processing status, extending the Brain Imaging Data Structure (BIDS) standard for both imaging and clinical data. Includes three components: protocol for data wrangling to standardize generation of analysis-ready datasets; specification for dataset organization that extends the Brain Imaging Data Structure (BIDS) standard; command-line interface and Python package that provide user-friendly tools for applying the framework.

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• 2 months ago - submitted by Maryann Martone

Circular plot used to visualize flows, relationships, or connections between different groups or entities, showing the strength (weight) of these links with arc sizes and colors, ideal for network analysis, migration data, or interaction matrices.

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• 2 months ago - by Anonymous

Durable, modular, upright compound microscope known for clinical, educational, and research use, offering brightfield and phase contrast, UIS optics, and ergonomic features for comfortable, long-term observation, making it popular for routine pathology (like Mohs surgery) and teaching labs. As an earlier BX model, it's reliable, configurable with different heads (binocular, trinocular) and accessories, and often updated with modern LED lighting, providing excellent cost-performance for detailed specimen viewing.

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• 2 months ago - by Anonymous

Compact, manual rotary microtome designed for preparation of thin sections of human and animal tissue samples of varying hardness, as far as they are suitable for manual cutting. Microtome for parafin sectioning. Can be used for all applications as diagnostic aid related to in vitro examination within the histopathological process.

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• 2 months ago - by Anonymous

Represents central facility and does not operate for profit, engaging in academic research collaborations and service provision on collaborative basis. Provides infrastructure for all kinds of sequencing, gene mapping and whole genome association studies in complex diseases as well as the validation of copy number variations.

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• 2 months ago - by Anonymous

Core provides expertise on study design and statistical analysis. Devoted to developing and understanding ways to derive scientific inferences from quantitative data and to developing methods for achieving this aim. The staff are highly trained in this field and experienced in all of the specialized areas of statistical techniques including clinical trials methodology, survival analysis, epidemiologic methods, analysis of genomics data, statistical genetics, methods for diagnostic medicine, health services research, survivorship, evidence-based medicine and psychometric methods.

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• 2 months ago - submitted by Patrick Badua

Web platform for sharing machine learning models and data science applications. Users can interact with the deposited models and applications through a public URL or fetch the models and apps to run them locally on their own computer.

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• 2 months ago - by Anonymous

Software pipeline for filtering sequence errors found in formalin-fixed and paraffin-embedded (FFPE) samples.

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• 2 months ago - by Anonymous

Software tool to convert the .eeg/.qle data recorded by Quanlan devices into .edf format.

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• 2 months ago - submitted by feng feng

Fully automated, high-content imaging and analysis platform designed for high-throughput biological screening and detailed cellular phenotyping. It’s widely used in research settings for applications that require both high resolution and high throughput microscopy across a range of complex biological models.

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• 2 months ago - by Anonymous

Facility offers traditional data acquisition, analysis, and cell sorting as well as imaging cytometry. Provided equipment includes: BD FACSAria Fusion: A cell sorter that can also be used as an analyzer, it is equipped with 488nm, 640nm, and 405nm excitation sources and is equipped to analyze up to fifteen parameters simultaneously. The Fusion is capable of processing up to 70,000 events per second and sorting up to four different cell populations at once. It is also equipped with an Automatic Cell Deposition Unit (ACDU) that allows sorting of cells into plates or onto slides; Amnis ImageStream MarkII: this imaging cytometer combines the speed and objectivity of flow cytometry with the detailed imagery of microscopy to allow you to objectively and quantitatively describe biological processes based on cell size, shape, and fluorescence location, texture, and signal intensity.This open platform enables new methods of research and improves traditional flow and imaging based applications. It is equipped with 405nm, 488nm, and 642nm excitation sources and is able to analyze up to twelve parameters simultaneously. It has 20X, 40X, and 60X objective lenses and Enhanced Depth of Field technology. It can process several thousand cells per second.

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• SciCrunch
• 2 months ago - submitted by Edyta Vieth

Service resource affiliated with Louisiana State University with core mission to develop and commercialize genetic resources for aquatic species. Provides research, technology development, and services for commercial aquaculture and biomedical use, including large-scale cryopreservation.

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• 2 months ago - submitted by Anita Bandrowski

Digital drug dispenser. Enables to eliminate serial dilution from dose-response workflow, miniaturize qPCR reaction volumes, and easily dispense any volume in any well for a broad array of low-volume dispensing applications. Accurately dispense volumes from picoliters to microliters for faster, more reliable dispensing of small molecules and biomolecules.

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• 2 months ago - by Anonymous

Software pipeline to quantify aggression and courtship behaviors in Drosophila. Codes and classifiers for the DANCE manuscript.

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• 2 months ago - by Anonymous

Core provides mass spectrometric sequencing and quantitation of peptides and proteins to support basic, translational, and clinical research programs at MSK. Utilizes modern high-resolution mass spectrometry and nanoscale liquid chromatography in conjuction with biochemical processing of samples with the end goal of determining the identity, relative abundance, and presence of post translational modifications from purified components, cell lysates, tissues, and select fluid such as cerebral spinal fluid. Advice is provided by the Core staff to facilitate the design, execution, and analysis of experiments.

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• 2 months ago - submitted by Patrick Badua