Curator Dashboard

Core provides full service genomics and Next Generation sequencing. Specializes in microbial sequencing.

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• SciCrunch
• 10 months ago - submitted by Edyta Vieth

Benchtop, high-resolution, spectral imaging instrument that integrates quantitative immunofluorescence and brightfield imaging.

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• RRID
• 10 months ago - by Anonymous

Software tool to project scRNA-seq data into reference single-cell atlases, enabling their direct comparison in stable, annotated system of coordinates. Predicts effects of cell perturbations and identifies gene programs that are altered in different conditions and tissues. Used for interpretation of cell states using reference single-cell maps.

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• RRID
• 10 months ago - by Anonymous

Software R and Python package for comparison and visualization of biological identifiers lists using area-proportional Venn diagrams. Also offers option to map Entrez and/or Affymetrix IDs to Ensembl IDs. In SVG mode, text and numbers can be dragged and dropped. Used to create area-proportional Venn diagram of 2 or 3 circles.

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• RRID
• 10 months ago - by Anonymous

Manually curated database of ferroptosis regulators and ferroptosis-disease associations. There are two secondary categories of ferroptosis regulators: (1) genes and (2) substances. Gene regulators include driver, suppressor, marker, and unclassified regulator. Substances cover range of chemical entities, including pure substances (e.g., iron, erastin) and mixtures (e.g., herbal extracts). Substance regulators include inducers and inhibitors. FerrDb V2 is updated database.

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• RRID
• 10 months ago - by Anonymous

24 channels microscope for incubator with automated remote monitoring of cell cultures. 24 independent cameras are used to acquire brightfield or darkfield scans and perform image analysis of up to 24 wells of cell culture in parallel automatically. Culture quality and data can be checked from PC. It enables real-time, non-invasive, label-free monitoring of cell growth directly inside standard incubators. The system captures time-lapse images and performs automated quantitative analysis, generating dynamic growth curves and detailed cellular behavior profiles.

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• RRID
• 10 months ago - by Anonymous

Cleveland Clinic is renowned for its advancements in cardiac care, including pioneering coronary artery bypass surgery, and its focus on research and education. It's also known for its strong performance in numerous other specialties, including neurosurgery, gastroenterology, and oncology

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• RRID
• 10 months ago - submitted by Edyta Vieth

Core provides biomechanical testing of biological structures and biomaterials. Allows investigators to conduct research of mechanical properties of existing biological structures and constructs, as well as to quantify potential for new technologies and clinical advancements. Robotic simulators are built around the simVITRO software platform and are designed for in vitro simulation of major joints including knee, spine, foot, ankle, hip, shoulder, elbow, wrist and more. Provides testing capabilities for range of biomechanical modalities and will offer expert advice and support for development of new test protocols, innovative techniques for instrumentation and data collection. Modalities include tissues, joints, and multi-articular units, such as foot or spine segments.

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• RRID
• 10 months ago - by Anonymous

Software tool to deliver estimated structure parameters of endocrine feedback control systems in vivo from serum or plasma hormone levels. Used for the evaluation of insulin-glucose homeostasis. Allows for calculating the secretory capacity of pancreatic beta cells (SPINA-GBeta), insulin receptor gain (SPINA-GR) and a static disposition index (SPINA-DI) from fasting concentrations of insulin and glucose. Additionally, HOMA, QUICKI and other calculated parameters are delivered as well. Binaries are available for macOS and Windows. For other operating systems, including Linux, Solaris and BSD, SPINA Carb is available as source code. Building from source requires Lazarus/Free Pascal. A special version of the calculation engine is available for modern S implementations, e.g. R.

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• RRID
• 10 months ago - submitted by Johannes W. Dietrich

cloud-based flow cytometry analysis platform bridging machine learning and analytical pipelines with classical analysis

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• RRID
• 10 months ago - submitted by Meg Goswami

Software Python tool for detecting and counting nematode eggs from microscopy images.

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• RRID
• 10 months ago - by Anonymous

Core provides annotated biospecimens for basic, clinical, and translational research. Helps researchers access, collect, manage, and protect biospecimens using automated processes and quality control. Offers safe and monitored management of biospecimens including temperature-controlled storage, preparation of derivatives from these specimens, aliquoting, distribution, and production of specimen collection kits.

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• RRID
• 10 months ago - submitted by Edyta Vieth

Core offers sample analysis and experiment design, market assessment and FDA regulation, facilitate interactions for intellectual property protection and support submission of translational grant applications within University of Michigan and government agencies.

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• RRID
• 10 months ago - submitted by Edyta Vieth

Core utilizes Akoya PhenoCycler-Fusion to enable high-plex spatial phenotyping of whole tissue slides at single-cell resolution.

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• RRID
• 10 months ago - submitted by Edyta Vieth

Provides expertise through experimental design consultations,cell isolation,single cell analytics (RNA, DNA, protein),biomarker validation,novel statistical and bioinformatics analyses. Services include Single cell targeted gene expression, Single cell RNA Seq, Single cell DNA Seq, Tissue sectioning, Tissue spatial analysis, Spatial transcriptomics and proteomics.

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• RRID
• 10 months ago - submitted by Edyta Vieth

Microscopy Facility supports cancer research, cell and developmental biology, and cross-disciplinary studies spanning molecular mechanisms to translational applications. Houses imaging platforms including widefield, confocal, multi-photon, super-resolution, spinning disk, and light sheet systems. Enables advanced modalities such as TIRF, FRET, STED, SHG/THG, and FLIM for detailed exploration of cell behaviour and microenvironments. Facility staff offer training, expert consultation, image analysis support, and troubleshooting.

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• RRID
• 10 months ago - by Anonymous

Provides access to the latest technologies, with consultation and services available throughout the design and execution of sequencing projects.

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• RRID
• 10 months ago - by Anonymous

Provides genomic services to study genome structure, dynamics and function using Illumina next generation sequencing. Offers expert advice on experimental design and bioinformatics analysis, training and assistance on data storage solutions.

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• RRID
• 10 months ago - submitted by Carla Fernandes

Software tool as second version of Kraken taxonomic sequence classification system.

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• RRID
• 10 months ago - by Anonymous

Software tool as text and source code editor for use with Microsoft Windows.

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• RRID
• 10 months ago - by Anonymous