Curator Dashboard

Fully protected Gamma irradiation device for blood irradiation in transfusion medicine and research.

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• RRID
• 9 months ago - by Anonymous

ICGC-Argo genomic pipeline. Home of the ICGC ARGO (Accelerate Research in Genomic Oncology) Data Platform Scientific Workflows.

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• 9 months ago - by Anonymous

Software tool for proteome-wide prediction of peptide tandem mass spectra by deep learning.

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• 9 months ago - by Anonymous

Software RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. Can be used to analyse RNA sequencing data obtained from organisms with reference genome and annotation. It takes a samplesheet and FASTQ files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix QC report.

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• 9 months ago - by Anonymous

High-performance nanoflow liquid chromatography system with intuitive and flexible user interface, covering broad range of applications from single cell to high throughput routine proteomics.

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• 9 months ago - by Anonymous

Web platform that integrates multiple programming language environments and enables data processing, data analysis, and machine learning through visual interface.

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• 9 months ago - by Anonymous

Web-based analysis platform offering end to end analytics for spatial omics datasets.

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• 9 months ago - submitted by Raj Jesudason

Core provides standardized services for derivation and characterization of human iPSC lines from peripheral blood and tissue samples. Offerings include PBMC isolation, reprogramming, Sendai virus reprogramming vector removal and analysis, karyotyping, mycoplasma testing, in vitro differentiation of neural and hemopoietic progenitor cells, and immunocytochemical staining of cell type markers and imaging. Core additionally offers hands-on training and consultation to support the use of iPSC technologies in disease modeling.

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• 9 months ago - submitted by Brooke DeRosa

Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant.

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• 9 months ago - submitted by Jensen Palmer

BRI is home to rigorously maintained biorepositories containing blood and tissue samples donated by people with immune-mediated diseases and healthy controls.Provides the collection of samples from research participants, sample processing, storage, and sharing.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Software R package and shiny app for processing, plotting, and interactive exploratory data analysis of full-length scRNA-seq as SingleCellExperiments.

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• 9 months ago - by Anonymous

Software package for robust identification of somatic mutations in acute myeloid leukemia using RNA-sequencing. Detects clinically important somatic mutations from RNA-seq data on relatively small gene panel (typically less than 100 genes).

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• 9 months ago - by Anonymous

Software package to automate analysis of evolutionary trajectories over time of series of sequences from same viral infection. Snakemake workflow for SARS-CoV-2 viral intra-patient evolution reporting and analysis.

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• 9 months ago - by Anonymous

Automated cell counter was developed using advanced machine-learning image analysis algorithm to deliver accurate cell counts and viability measurements using slide containing cell sample in fewer than 30 seconds. Has automated lighting, focus, capturing, counting, and saving.

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• 9 months ago - submitted by Dongjun Han

Design and analysis software enables user to set up runs, send plates to the specific instrument, open completed run files, and analyze and review data in integrated and streamlined fashion. Software can be run with security, audit, and e-signature (SAE) enabled. The software also provides suite of analysis modules for secondary analysis and comes with multi-language support.

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• 9 months ago - submitted by Dongjun Han

Software suite of algorithms used for arranging and visualizing graph structures. They provide variety of layout styles, such as hierarchical, organic, tree, circular, and orthogonal, each optimizing for different criteria and visualization needs.

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• 9 months ago - submitted by Dongjun Han

Software ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data.

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• 9 months ago - by Anonymous

Software Python3 tool for advanced, user-friendly detection and nuanced analysis of biological relatedness from ancient DNA samples in archaeogenomics. Can classify up to third-degree relatedness and differentiate between two types of first-degree relatedness, full siblings and parent-offspring.

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• 9 months ago - by Anonymous

Software tool to infer family relationships for degraded samples. Used to infer degree of relationship (up to second degree, i.e. nephew/niece-uncle/aunt, grandparent-grandchild or half-siblings) for pair of low-coverage individuals.

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• 9 months ago - by Anonymous

Software tool to simulate pedigree structures. Used for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either model of crossover interference or traditional Poisson model for inter-crossover distances.

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• 9 months ago - by Anonymous