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Software R suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
Software application that simplifies mate allocation decisions for breeders. Allows to simplify mate allocation by filtering out possible crosses with negative EBVs and by using kinship threshold between parents set by the user.
Tanon series chemiluminescence image analysis system equipped with advanced scientific research-grade cooling CCD and professional lens with fully automatic mechanical one-key switch various shooting modes, can be used for chemiluminescence, multi-color fluorescence, visible light, ultraviolet fluorescence detection to provide sample images.
Maraviroc is a CCR5 antagonist for MIP-1α, MIP-1β and RANTES with IC50 of 3.3 nM, 7.2 nM and 5.2 nM in cell-free assays, respectively. Maraviroc is used in the treatment of HIV infection.
Clinical proteomic for patient care. Molecular diagnostics laboratory operated by OncoPlex Diagnostics, which is mProbe Inc company. The lab is CAP-accredited and CLIA-certified, meaning it meets high standards for clinical quality and regulatory compliance.
Google Cloud Platform projects with security controls for high-risk data, managed by Stanford Research Computing. Nero GCP offers managed GCP projects in several configurations available to and billed directly to Stanford researchers working with high-risk data (PHI, PII, etc.).
Shared on-premises computing cluster with security controls for high-risk data, managed by Stanford Research Computing. Carina contains base set of shared compute and storage resources available to Stanford researchers working with high-risk data (PHI, PII, etc.), with additional dedicated capacity available for purchase.
Software package for evaluating gene signatures in single-cell datasets. UCell signature scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation demands less computing time and memory than other available methods, enabling the processing of large datasets in a few minutes even on machines with limited computing power. UCell can be applied to any single-cell data matrix, and includes functions to directly interact with SingleCellExperiment and Seurat objects.
Facility, primarily based in Imaging Suite, offers range of imaging platforms, including widefield and confocal microscopes with fast detectors. Many systems support live imaging, including Selective Plane Illumination Microscopy (SPIM) system ideal for small animal models and spheroids.
Facility supports flow cytometry, cell sorting, and mass cytometry across the University of Birmingham (UoB). Based in the College of Medicine and Health. Also supports instruments at Queen Elizabeth Hospital, Institute of Translational Medicine (ITM), and College of Life and Environmental Sciences. Services range from user training on self-service instruments to expert-supported cell sorting and GCP-compliant mass cytometry in dedicated ITM labs.
Core, within College of Medicine and Health, offers expert support for all aspects of recombinant protein production. Using range of expression systems, produces proteins suitable for diverse downstream applications.
Video analysis software designed for the study of animal behavior.
Software R package to efficiently compute robust markers across single-cell datasets. Robust marker signatures from single-cell data.
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Core provides research-focus histology, Immunohistochemistry, In-situ Hybridization (ACDBio RNAscope and Basescope) and Highplex Spatial-omics data generation (Akoya CODEX Fusion, 10X Genomics Visium HD, NanoString GeoMX and CosMX). Services also include BSL-2 NHP tissue processing and cryosectioning, tissue microarray (TMA) construction and multiplexing RNAScope and Protein marker staining (PANINI).
Compact, high-resolution digital microscope and whole slide scanner designed for professionals in fields like pathology, histology, and research. It features 20x Infinity Plan Apochromatic objective with 0.65 numerical aperture, offering balance between magnification and depth of field—ideal for imaging thicker tissue sections and smears with enhanced clarity.
Core facility provides access to technologies in flow cytometry analysis including spectral analysis, high throughput imaging analysis (Amnis) and fluorescence assisted particle sorting (FACS). Instrument training, experiment and panel design, scientific consultation and sample processing are available. Offers training on facility equipment.
Leica M80 is modular, ergonomic zoom stereomicroscope designed for range of routine applications in life sciences and industrial settings. It features 8:1 zoom range, providing continuous zoom from 7.5x to 60x, and is known for its high resolution, large field of view, and increased depth of focus. M80 is particularly well-suited for tasks like inspection, photography, and measurement of samples such as circuit boards, hairs, fibers, and biological tissues.
Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation.
Flow Cytometer designed for clinical applications. Makes multicolor flow cytometry less complex by using avalanche photodiode (APD) detector technology. Streamlines high-complexity testing with 13-color capability and new detector technology for easier compensation. Avalanche photodiode detectors offer advanced sensitivity and improve diagnostic accuracy.