Curator Dashboard

Software statistical framework that allows simultaneous extraction of tumor sample composition and cell type and sample specific whole-transcriptome profiles from individual bulk RNA-seq samples.

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• 8 months ago - by Anonymous

Software integrated library and plugins for mathematical morphology with ImageJ.Collection of generic tools based on Mathematical Morphology to process binary and grey-level 2D and 3D images, integrated into user-friendly plugins.

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• 8 months ago - by Anonymous

Software tool to infer junction-balanced genome graphs with high fidelity. Builds genome graph based on junctions and read depth from whole genome sequencing, inferring optimal copy numbers for both vertices (DNA segments) and edges (bonds between segments).

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• 8 months ago - by Anonymous

Software annotation, interpretation and visualisation tool for structural variants. Used to aid interpretation of structural variant and copy number data derived from short-read, whole-genome sequencing. Classifies raw structural variant calls into distinct events and predicts their effect on local structure of derivative chromosome and functional impact on affected genes.

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• 8 months ago - by Anonymous

Software tool to determine read depth ratios of supplied tumor and reference genomes.

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• 8 months ago - by Anonymous

Software tool to generate tumor BAF file for use in PURPLE from provided VCF of likely heterozygous SNP sites.

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• 8 months ago - by Anonymous

Software suite containing tools for detection of genomic rearrangements. Multithreaded structural variant (SV) caller that performs efficient genome-wide break-end assembly prior to variant calling using novel positional de Bruijn graph-based assembler. GRIDSS2 is structural variant caller to explicitly report single breakends-breakpoints in which only one side can be unambiguously determined.

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• 8 months ago - by Anonymous

Fixation pump for anatomy laboratories. DUOTRONIC III features extra light 1/8 HP motor pump, ensuring considerable outflow without preliminary pressure. The pump is magnetic transmission, centrifugal device equipped with mixing system (based on the principle of the water fountain) allowing homogeneous mixing. Specifications: Stainless steel base with handles; 11 litre tank, graduation in litre; 15 Psi pressure; 220 mono 50 Hz/60 Hz.

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• 8 months ago - by Anonymous

Core has maintained CAP (College of American Pathologists) and CLIA (Clinical Laboratory Improvement Act) accreditations since 2001 and has maintained the required standards for the past 20 years. Core offers automated clinical chemistry, immunology and hematology assays. Tests range from commercially available FDA approved methods to research grade ELISA’s.

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• 8 months ago - submitted by Matthew Rudy

Software R package to infer biological activities from omics data using collection of methods.

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• 8 months ago - by Anonymous

Software R package for storing the regulons. Gene regulatory network containing signed transcription factor (TF) - target gene interactions. DoRothEA regulons, the collection of TF and its transcriptional targets, were curated and collected from different types of evidence for both human and mouse. Confidence level was assigned to each TF-target interaction based on number of supporting evidence.

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• 8 months ago - by Anonymous

Healthcare in South Korea is single-payer system organized through National Health Insurance Service (NHIS). Nearly all citizens receive universal medical care through this system. NHIS participates in health screening programmes to offer relevant and useful data for health researchers, especially in the field of non-communicable diseases and health risk factors, and policy-maker.

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• 8 months ago - by Anonymous

Horizon Europe project aiming to collect concrete evidence of Open Science effects, study pathways of Open Science practices, from input to output, outcome and impact, including consideration of enabling factors and key barriers.

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• 8 months ago - submitted by Anita Bandrowski

Core designed for range of solution-state pharmaceutical and biological chemistry applications. Facility is equipped with 600 MHz magnet equipped with high-throughput autosampler and QCI-F cryoprobe optimised for 1H and 19F sensitivity, and 400 MHz magnet dedicated to routine chemistry applications. Facility is also operating ligand-observed 19F-fragment library screening service for drug discovery.

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• 8 months ago - by Anonymous

Standard RT PCR system allows quantitative PCR in established 96 well format, thus providing open platform for each kind of qPCR plastic ware from 0.2 mL single tubes to 96 well microplates.

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• 8 months ago - by Anonymous

Database of Statistics Netherlands (CBS). Contains lifestyle data of Dutch population living in private households. The numbers can be broken down by various personal characteristics.

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• 8 months ago - by Anonymous

Software R package implements time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, and RRA algorithms facilitating time series motif (i.e., recurrent pattern), discord (i.e., anomaly), and characteristic pattern discovery along with interpretable time series classification.

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• 8 months ago - submitted by Marybeth Baumgartner

Software tool for visualizing high dimensional data using novel conceptual framework for learning and visualizing manifold to preserve both local and global distances.

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• 8 months ago - submitted by Marybeth Baumgartner

Core offers various services related to animal model generation and maintenance.

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• 8 months ago - by Anonymous

Software R package to convert between human and non-human gene orthologs/homologs. Integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 , Eyre et al. 2007 , Seal et al. 2011 ).

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• 8 months ago - by Anonymous