Curator Dashboard

Software Python package for inferring transcription factor binding variability from scATAC-seq data by implmenting algorithm proposed in chromVAR. It is built on anndata and mudata therefore can work seamlessly with scanpy and muon pipeline.

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• 5 months ago - submitted by Seppe De Winter

Software R package for conditional inference procedures in permutation test framework. Conditional inference procedures for general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems described in.

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• 5 months ago - submitted by yoann rodriguez

Software R package for descriptive statistics and exploratory data analysis. Collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data.

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• 5 months ago - submitted by yoann rodriguez

Software Python tool providing statistical tests for large-scale heterogeneous data with enhanced support for missing data.

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• 5 months ago - submitted by Fabian Woller

Knowledge graph system developed for managing and organizing rich metadata objects, initially for the Human Brain Project (HBP) and now extended to be a more generic, domain-agnostic solution. It is associated with CSCS (Swiss National Supercomputing Centre) and aims to provide a comprehensive toolset and API for working with knowledge graphs.

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• 5 months ago - submitted by Oliver Schmid

Open data repository to facilitate research on the relationship between neighborhoods and health, especially within the context of large federally funded surveys and cohort studies. Used to explore topics of interest to neighborhoods and communities. NaNDA measures can be readily linked to survey data, cohort studies, electronic medical records, or other microdata, via geographic identifiers, or combined and explored on their own. NaNDA datasets are created by researchers in the Social Environment and Health program at the University of Michigan Institute for Social Research.

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• 5 months ago - by Anonymous

Software tool as network inference in reduced diemnsion. Used to perceive contribution of regulatory components by transforming datasets into networks, using dimensionality reduction and assessing the overlapping structure with AUC metrics.

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• 5 months ago - by Anonymous

Software to perform convolution of human bulk transcriptomics and evaluate abundance scores for 10 cell populations. Allows quantification of absolute abundance of eight immune and two stromal cell populations in heterogeneous tissues from transcriptomic data.

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• 5 months ago - by Anonymous

A 3' snRNA-seq dataset of the granular retrosplenial cortex (RSG) of mice and rats. Housed at the Neuroscience Multi-omic (NeMO) archive.

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• 5 months ago - submitted by Isla Brooks

Independent, not-for-profit research institute dedicated to plant science located in the Olivette community of Saint Louis County, Missouri, United States.

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• 5 months ago - submitted by Edyta Vieth

Ion S5 next-generation sequencing system enables simple targeted sequencing workflow for your lab with reliable performance and industry-leading speed. Torrent Server direct connection to the Ion S5 Sequencer is supported.

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• 5 months ago - by Anonymous

Software Rust-Based suite of utilities for ultra-fast genomic feature extraction. Used for ultra-fast and scalable genome annotation access. Can be used both as a command-line tool and as a Rust library.

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• 5 months ago - submitted by Baohua Chen

Platform provides public health surveillance data to better understand the causes, outcomes, effective treatments, and later effects of cancer among children, adolescents, and young adults in the U.S. Developed under the NCI Childhood Cancer Data Initiative (CCDI), the NCCR contributes to the CCDI data ecosystem by serving as a linked infrastructure of central cancer registry data that will integrate various other childhood cancer data—from hospitals, research centers, heath care administrations, and other sources—to enhance access to and utilization of childhood cancer and survivorship data. The NCCR uses the Virtual Pooled Registry Cancer Linkage System to link multiple cancer registries and generate an accurate count of childhood cancer cases by combining information that appears in more than one registry.

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• 5 months ago - by Anonymous

Offers advanced single and combined services including genomics, imaging, metabolomics and lipidomics, in vivo disease modelling, cell-based alternative methods, drug screening, and bioinformatics, providing researchers with essential tools for scientific exploration. Staff members offer advice on experimental design, data processing, and troubleshooting, as well as training to facilitate the use of our technologies.

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• 5 months ago - submitted by Shaman Narayanasamy

Core offers advanced single and combined services including genomics, imaging, metabolomics and lipidomics, in vivo disease modelling, cell-based alternative methods, drug screening, and bioinformatics, providing researchers with essential tools for scientific exploration. Expert staff members offer advice on experimental design, data processing, and troubleshooting, as well as training to facilitate the use of our technologies.

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• 5 months ago - submitted by Manuel Buttini

Software HLA typing tool to determine HLA-I germline alleles by aligning sequencing reads to HLA-A, HLA-B and HLA-C regions present in the IMGT/HLA database, optimized for cancer genomics analysis with support for tumor-normal paired samples and designed to handle complex scenarios including HLA-Y pseudogene detection and loss of heterozygosity assessment. Open-source integrative framework that characterizes the HLA-I locus, including its tumor status from WGS data.

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• 5 months ago - by Anonymous

Japanese company that began as a textile manufacturer in 1882 and has expanded to become a global provider of high-function products, including films, functional polymers, industrial materials, and biotechnology products such as enzymes and diagnostic reagents. The company's business is organized around its core technologies in polymerization, modification, processing, and biotechnology, allowing it to contribute to fields like healthcare, environment, and electronics.

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• 5 months ago - by Anonymous

Bioscience division of the Japanese conglomerate Nichirei Corporation, specializing in biomedical products for the health and life science industries. The company develops, manufactures, and distributes products for immunohistochemistry (IHC), such as diagnostic and research reagents as well as products for cell biology, rapid diagnostics, functional materials, and natural materials processing. Their products support applications in pathological diagnosis, food safety, and cosmetic ingredients.

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• 5 months ago - by Anonymous

Software application that provides search and clustering functionality, typically used with amplicon sequence data. Used to assign sequences to clusters.

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• 5 months ago - by Anonymous

Training and support to research with human embryonic and induced pluripotent stem cells (iPSC). Offers opportunity to dissect early human development, generate models of disease, and develop cellular or drug therapeutics.

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• 5 months ago - by Anonymous