Curator Dashboard

Non-contact liquid handler that uses Acoustic Droplet Ejection (ADE) technology to precisely transfer nanoliter-sized droplets of liquid for high-throughput applications in pharmaceutical research, drug discovery, and various areas of genomics and biology. Echo 555 / 550 Liquid Handler: 2.5 nL increment; Flow rate:0.25 – 1 µL/sec; Ideal for reactions of 0.05 – 1 µL; Supports 384 and 1536-well source plate formats; Used for transfer of small molecules for high throughput screening.

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• 4 months ago - by Anonymous

Web data report tool uses publicly available data to generate reports for every Appalachian state and county across different topics. Provides detailed information on socioeconomic and demographic factors in Appalachian Region, serving to inform policymakers and regional partners for economic development and decision-making.

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• 4 months ago - by Anonymous

Mission of U.S. Department of Agriculture's Economic Research Service is to anticipate trends and emerging issues in agriculture, food, environment, and rural America and to conduct high-quality, objective economic research to inform and enhance public and private decision making. Rural-Urban Continuum Codes distinguish U.S. metropolitan (metro) counties by the population size of their metro area, and nonmetropolitan (nonmetro) counties by their degree of urbanization and adjacency to a metro area. The codes allow researchers, policy makers, and others to view county-level data by finer residential groups—beyond metro and nonmetro—when analyzing trends related to population density and metro influence.

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• 4 months ago - by Anonymous

Code to create cisTarget databases.

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• 4 months ago - submitted by Seppe De Winter

Genomic language model trained on cross species data.

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• 4 months ago - submitted by Seppe De Winter

Software application as long-range genomic foundation model pretrained on context lengths of up to 1 million tokens at single nucleotide resolution.

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• 4 months ago - submitted by Seppe De Winter

Software Nextflow pipeline for calling allele-specific variants (ASVs) from 5′ single-cell RNA sequencing data.

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• 4 months ago - submitted by Andrey Shevtsov

Biostatistics Shared Resource (BSR) provides free, short-term statistical support to Fred Hutch/University of Washington/Seattle Children’s Cancer Consortium investigators, particularly those without dedicated funding. Services include consultations on study design, sample size, power, and analytic methods; assistance with data analysis, interpretation, and manuscripts; and development of statistical sections for grant proposals. While intended as short-term collaborations, BSR projects often lead to funded grants and longer-term partnerships with biostatisticians.

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• 4 months ago - submitted by Cassie Sather

Open-source software Python library that provides high-level interface for PyTorch deep learning framework.

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• 4 months ago - by Anonymous

Digital pathology system designed for high-speed, high-resolution brightfield and fluorescence scanning. Equipped with continuously moving stage, advanced Plan-Apochromat optics including 10x objective, and a back-illuminated sCMOS camera. Capacity:150 slides (6 magazines, 25 slides each) with automatic loading and continuous scanning.Scanning:Dual-mode scanning (brightfield and fluorescence) with area scanning and autofocus.Motorized Camera ChangerIncluded, for seamless transitions between BF and FL imaging modes without manual intervention.Motorized Objective changer Included when two objectives are selected (supports two objectives).Brightfield Scanning Speed:1 minute 30 seconds for 15 mm x 15 mm area at 0.19 µm/pixel resolution. Fluorescence Scanning Speed:8 minutes 30 seconds for a 15 mm x 15 mm area with 3 fluorescent channels at 20 ms exposure time.Throughput Optimized for high-throughput workflows with fully automated slide handling. Objectives Plan-Apochromat 10x/0.3 NA, 20x/0.8 NA, and 40x Corr/0.95 NA objectives.Brightfield Magnification Up to 103x. Fluorescence Magnification Up to 98x (with 1.6x adapter). Image Output MRXS format with export options to JPG, JPEGXR, BMP, PNG, TIFF, Roche TIFF, SVS, and DICOM.Slide Compatibility: Slides measuring 75.0-76.2 mm (L) x 25.0-26.0 mm (W) x 0.9-1.2 mm (T) with No. 1 or 1.5 coverslips (0.13-0.19 mm).

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• 4 months ago - by Anonymous

Updated knowledgebase integrating more curated associations in plants and animals. manually curated resource of genome-wide genotype-to-phenotype associations for a wide range of species. Database of publicly available GWAS summary statistics. Each GWAS can be browsed with the manhattan plot, risk loci, MAGMA (i.e. gene-based) results, SNP heritability and genetic correlations with other GWAS in the database. Full summary statistics can be downloaded from the original source following the provided links.

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• 5 months ago - submitted by Jason Bubier

Software minimum viable HPC pipeline. CGPipe is a replacement for the venerable "make" that aims to automate the process of running complex analysis pipelines on high-throughput clusters. Make is a standard build tool for compiling software.

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• 5 months ago - by Anonymous

Software R package to analyse differences in cell type proportions in single cell RNA-seq data. Used for analysing single cell data.

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• 5 months ago - by Anonymous

Software tool for Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference.

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• 5 months ago - by Anonymous

Software tool to cluster cells using the genetic variants detected within the scRNAseq reads. Robust clustering of single-cell RNA-seq data by genotype without reference genotypes. Used for clustering scRNAseq by genotypes.

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• 5 months ago - by Anonymous

400 slide scanner with Aperio ImageScope DX clinical viewing software, and high-performance viewing workstation including color-calibrated medical grade monitors. System can be used standalone, or in conjunction with Aperio Path DX case management software, for streamlined, clinical workflow. Developed from Leica Biosystems,enables to produce consistent, diagnostic quality images, enabling pathologists to diagnose with confidence.

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• 5 months ago - submitted by yoann rodriguez

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• 5 months ago - submitted by yoann rodriguez

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• 5 months ago - submitted by yoann rodriguez

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• 5 months ago - submitted by yoann rodriguez

Superfrost PLUS slides are designed to secure tissue sections without the need for laboratory-applied coatings

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• 5 months ago - submitted by yoann rodriguez