Curator Dashboard

Software tool as deep learning framework for analyzing viral protein sequences at genomic scale using transformer-based models with sparse attention mechanisms. The tool processes complete viral genomes (up to 61,000 amino acids) to predict protein-protein interactions and identify functional relationships between viral proteins through attention-based contact analysis.

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• 3 months ago - submitted by Mahdi Belcaid

A reagent kit based on tyramide signal amplification technology for fluorescent covalent labeling, enabling 3–6-color multiplex staining on the same tissue section through multiple iterative antibody “staining–stripping” cycles.

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• 3 months ago - submitted by Emma MA

Software R package to quantify relation between two measurement methods. Addresses regression problems with errors in both variables and without repeated measurements.

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• 3 months ago - submitted by Jinho Lee

Atellica UAS 800 Analyzer is automated urine sediment analyzer designed to minimize the need for manual microscopy.

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• 3 months ago - submitted by Jinho Lee

New type of analyzer that is capable of analyzing the birefringence of particles and the amount of nucleic acid content and size information of the cell, coupled with the complexity of internal structure, using a blue semiconductor laser (488 nm).

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• 3 months ago - submitted by Jinho Lee

Core has resources available at Fred Hutch and UW in collaboration with multi-disciplinary imaging research groups specializing in respective imaging technologies. Provides services including: support for animal imaging; consultation for appropriate use of imaging; training and education; help with protocol development; infrastructural support; and strategic acquisition of new imaging equipment. Provides animal imaging equipment, including MRI, PET, US and optical to support scientific projects within the UW-FH Cancer Consortium.

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• 3 months ago - submitted by Cassie Sather

Convenience wrapper function around the following three functions that are often run together when mapping query data to a reference: TransferData, IntegrateEmbeddings, ProjectUMAP.

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• 3 months ago - submitted by Edyta Vieth

Software tool as comprehensive framework for integration of single-cell omics data with probabilistic contrastive learning.

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• 3 months ago - submitted by Edyta Vieth

Open-access, browser-based visualization and summary tool for venom transcriptomic and proteomic data. R Shiny–based interactive application designed as visualization and reporting interface for venom transcriptomic and proteomic data. It enables users to explore annotation metrics, toxin gene families, and quality-control summaries generated by analysis pipelines. While it will eventually serve as part of the VenomsBase front end, VenomView currently operates as standalone prototype. Provides interactive dashboards showing assembly quality, annotation scores, toxin gene families, and functional domains generated by the VenomFlow analysis pipeline. Connected to VenomLanding, VenomView currently features Doryteuthis pealeii (Squid), linking metadata with detailed annotation summaries. The expanded version will include Sepia bandensis (Cuttlefish), Octopus bimaculoides, and arachnid species.

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• 3 months ago - submitted by Shaadi Mehr

Facility features 7 state of the art high field NMR instruments ranging from 400 to 600 MHz. The facility provides a diverse selection of probes including room temperature, LN2 cooled probes, 10mm Polymer probes, Diffusion and Solid-State NMR probes. The entire suite of 1D, 2D, Diffusion and Solid-State NMR capabilities are available for a broad range of nuclei.

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• 4 months ago - submitted by Edyta Vieth

Core provides data-related support to cancer researchers by offering services like study design consultation, data management, programming, and access to patient data. Its purpose is to help researchers develop and execute studies, manage data, analyze results, and ultimately accelerate cancer research by making large, complex datasets more accessible and usable. CDS team uses evidence-based standards and effective quality assurance procedures from project design to study end. All CDS study staff are HIPAA-compliant and certified in Human Subjects and Good Clinic Practice training.

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• 4 months ago - submitted by Cassie Sather

Core provides services including Geospatial Data Technology and Analysis, Epidemiological Information about the Catchment Area, Cancer Outcomes Data and Analysis.

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• 4 months ago - by Anonymous

Core provides services including consultation on research design, training on interviewing, grant development, conducting focus groups, data analysis.

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• 4 months ago - by Anonymous

Core provides services for comprehensive genetic and genomic analysis of NHPs, including DNA sequencing, nucleic acid extraction, macaque-specific genotyping assays, and NHP DNA Bank distribution services.

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• 4 months ago - by Anonymous

Core is equipped with suite of cryostats and measurement systems for probing electrical, magnetic, and quantum properties at cryogenic temperatures. Sample preparation capabilities include tools for wafer processing, nanomaterial transfer, and inert atmosphere handling. Deposition systems support thin film growth and surface treatment using a variety of techniques. Wirebonding and related sample preparation tools enable precise device packaging and integration, supporting a broad range of experimental workflows in quantum and nanoscale science.

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• 4 months ago - by Anonymous

Software pipeline for complete analysis of bacterial genomes.

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• 4 months ago - by Anonymous

Software R package to facilitate proteogenomics studies. Houses functions to create customized protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. Used to generate protein variant sequences based on imported mutations from VCF, MAF and additional files to generate protein-variant database for use in proteogenomics studies.

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• 4 months ago - submitted by Harmen van de Werken

Clinical Research Coordinator Core is available to support and collaborate with investigators and their research teams in all phases of clinical research, providing services that include assisting with the organization, implementation and completion of clinical research studies.

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• 4 months ago - submitted by Edyta Vieth

Facility maintains and administers the chip high performance computing cluster. The chip cluster is built from more than 150 machines featuring Intel CPUs and NVIDIA GPUs.

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• 4 months ago - by Anonymous

Software multi-user server for Jupyter notebooks.

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• 4 months ago - by Anonymous