Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Keywords:genome (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

776 Results - per page

Show More Columns | Download 776 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
South African National Bioinformatics Institute: Resources
 
Resource Report
Resource Website
South African National Bioinformatics Institute: Resources (RRID:SCR_001867) data processing software, portal, data or information resource, data analysis software, organization portal, software application, software resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. The South African National Bioinformatics Institute delivers biomedical discovery appropriate to both international and African context. Researchers at SANBI perform the highest level of research and provide excellence in education. Research at SANBI has set well recognized milestones in the field of computational biology. The tools and techniques used have not only been developed but also implemented across heterogeneous domains of advanced research. Local and international efforts have driven our discoveries. Until recently, the core of SANBIs research has focused upon gene expression biology. Methods developed and applied at SANBI revolve around a greater understanding of the underlying causes of diseases. SANBI approaches the problem by comparison of genes, genomes and transcriptomes. It uses computational gene expression biology to create novel biological insights and to provide biomarkers for experimental validation. It also performs analysis of human genome variation, transcriptional diversity on both the expression and splicing level and the unravelling of transcriptional regulatory networks. Resources - Hinv, STACKdb, Malaria resources and Trypanosome databases are available for on-line seaching. - SANBI offers WCD, STACKdb, stackPACK and eVOC and the eVOKE viewer as tools that can be downloaded. Sponsors: SANBI receives funding and support from a range of organisations in South Africa and Internationally. Organisations currently supporting SANBI include: South Africa * South African Medical Research Council * South African AIDS Vaccine Initiative * National Bioinformatics Network * National Research Foundation * Claude Leon Foundation * International Business Machines Inc. Europe * European Unions 6th Framework Programme * World Health Organization USA * US National Institutes of Health * Fogarty International Centre * Ludwig Institute for Cancer Research expression, gene, gene expression, bioinformatics, biological, biology, biomaker, biomedical, computational biology, disease, genome, heterogeneous domain, human, splicing, transcriptional diversity, transcriptional regulatory network, transcriptome, variation THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10432 SCR_001867 SANBI 2026-02-14 02:00:13 0
Stanford Genomic Resourses
 
Resource Report
Resource Website
Stanford Genomic Resourses (RRID:SCR_001874) data or information resource, portal, topical portal This resource hyperlinks to systematic analysis projects, resources, laboratories, and departments at Stanford University. gene, genes, aspergillus, candida, genome, genomics, human, mouse THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10436 SCR_001874 Genomic Databases 2026-02-14 02:00:20 0
MEME Suite - Motif-based sequence analysis tools
 
Resource Report
Resource Website
1000+ mentions
MEME Suite - Motif-based sequence analysis tools (RRID:SCR_001783) MEME Suite data processing software, data analysis service, analysis service resource, data or information resource, production service resource, data analysis software, service resource, source code, software application, software resource, database Suite of motif-based sequence analysis tools to discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences; search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN; compare a motif to all motifs in a database of motifs; associate motifs with Gene Ontology terms via their putative target genes, and analyze motif enrichment using SpaMo or CentriMo. Source code, binaries and a web server are freely available for noncommercial use. gene ontology, motif, comparative genomics, dna regulatory motif, dna sequence, dna, gene, transcription factor, genome, protein, analysis, function analysis, comparison, cluster, enrichment analysis, sequence analysis, bio.tools, FASEB list lists: DREME
is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is related to: Gene Ontology
is related to: Glam2
is related to: ANNOgesic
is related to: memesuite-lite
has parent organization: National Biomedical Computation Resource
is parent organization of: GOMO - Gene Ontology for Motifs
NCRR R01 RR021692 PMID:19458158
DOI:10.1093/nar/gkl198
Free, Freely available nif-0000-10298, biotools:meme_suite, OMICS_08103 https://bio.tools/meme_suite http://meme.sdsc.edu/meme4_6_1/intro.html, http://meme.nbcr.net/meme/, https://sources.debian.org/src/meme/ SCR_001783 The MEME Suite 2026-02-14 02:00:18 2091
AStalavista
 
Resource Report
Resource Website
50+ mentions
AStalavista (RRID:SCR_001815) AStalavista data analysis service, analysis service resource, production service resource, service resource, software resource Tool that extracts and displays alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, it detects the variations in their splicing structure and identifies all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code. It provides a visual summary of the AS landscape in the analyzed dataset, the possibility to browse the results on the UCSC website or to download them in GTF or ASTA format. You can use AStalavista for any genome by providing your own annotation set, the identifier of your gene(s) of interest, or analyze the AS landscape of reference annotation datasets like Gencode, RefSeq, Ensembl, FlyBase, etc. alternative splicing event, alternative splicing, visualization, genome, transcript is listed by: OMICtools
is listed by: SoftCite
has parent organization: Center for Genomic Regulation; Barcelona; Spain
PMID:17485470 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01943 http://genome.imim.es/astalavista
http://genome.crg.es/astalavista/
SCR_001815 Alternative Splicing transcriptional landscape visualization tool 2026-02-14 02:00:19 83
QuadGT
 
Resource Report
Resource Website
1+ mentions
QuadGT (RRID:SCR_000073) QuadGT software resource Software package for calling single-nucleotide variants in four sequenced genomes comprising a normal-tumor pair and the two parents. Genotypes are inferred using a joint model of parental variant frequencies, de novo germline mutations, and somatic mutations. The model quantifies the descent-by-modification relationships between the unknown genotypes by using a set of parameters in a Bayesian inference setting. Note that you can use it on any subset of the four related genomes, including parent-offspring trios, and normal-tumor pairs without parental samples. single-nucleotide variant, sequenced genome, genotype, genome is listed by: OMICtools
has parent organization: University of Montreal; Quebec; Canada
Normal, Tumor, Cancer Terry Fox Research Institute ;
Canadian Institutes for Health Research ;
Canada National Sciences and Engineering Research Council
PMID:23734724 Free, Available for download, Freely available OMICS_02108 SCR_000073 2026-02-14 01:59:36 1
SOAPfuse
 
Resource Report
Resource Website
1+ mentions
SOAPfuse (RRID:SCR_000078) SOAPfuse software resource THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. An open source tool developed for genome-wide detection of fusion transcripts from human being paired-end RNA-Seq data. This tool is a part of a larger set of tools to efficiently align oligonucleotides onto reference sequences . software, resource, open license, DNA sequencing, genome, transcripts, RNA, oligonucleotide is listed by: OMICtools
is listed by: SourceForge
is listed by: SOAP
PMID:23409703 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01357 SCR_000078 2026-02-14 01:59:36 7
RAST Server
 
Resource Report
Resource Website
500+ mentions
RAST Server (RRID:SCR_014606) RAST production service resource, service resource A SEED-quality automated service that annotates complete or nearly complete bacterial and archaeal genomes across the entire phylogenetic tree. RAST can also be used to analyze draft genomes. microbiome, seed, annotate, genome, bacteria, archaea, service, bio.tools is listed by: Human Microbiome Project
is listed by: Debian
is listed by: bio.tools
National Science Foundation 0850546;
NIAID contract HHSN272200900040C
PMID:18261238 Free for the scientific community, Login required biotools:theseed https://bio.tools/theseed SCR_014606 Rapid Annotation using Subsystem Technology, Rapid Annotation using Subsystem Technology Server 2026-02-14 02:03:01 907
Prokka
 
Resource Report
Resource Website
1000+ mentions
Prokka (RRID:SCR_014732) sequence analysis software, data processing software, data analysis software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool for the rapid annotation of prokaryotic genomes. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. annotation, prokaryote, genome, prokaryotic genome, sequence analysis software, annotation software, bio.tools is listed by: Debian
is listed by: bio.tools
is listed by: OMICtools
DOI:10.1093/bioinformatics/btu153 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_04220, biotools:prokka https://bio.tools/prokka
https://sources.debian.org/src/prokka/
https://sources.debian.org/src/prokka/
SCR_014732 2026-02-14 02:03:02 4876
Encode
 
Resource Report
Resource Website
1000+ mentions
Encode (RRID:SCR_015482) portal, data set, consortium, data or information resource, organization portal Consortium to build comprehensive parts list of functional elements in human genome. This includes elements that act at protein and RNA levels, and regulatory elements that control cells and circumstances in which gene is active. Data from 2012-present. genome, sequencing, protein, rna, dna, consortium is related to: modENCODE
is related to: ENCODE
is related to: 3D Genome
has parent organization: Stanford University; Stanford; California
has parent organization: University of California at Santa Cruz; California; USA
NHGRI HG006992 PMID:15499007 Free, Freely available SCR_015482 ENCODE Project 2026-02-14 02:02:50 1244
SpydrPick
 
Resource Report
Resource Website
1+ mentions
SpydrPick (RRID:SCR_018176) data analysis software, software resource, data processing software, software application Software command line tool for performing direct coupling analysis of aligned categorical datasets. Used for analysis at scale of pan genomes of many bacteria. Incorporates correction for population structure, which adjusts for phylogenetic signal in data without requiring explicit phylogenetic tree. Direct coupling analysis, aligned categorical datasets, analysis, genome, bacteria, phylogenetic signal, correction, phylogenetic tree, data, bio.tools is listed by: Debian
is listed by: bio.tools
COIN Center of Excellence ;
Academy of Finland ;
Wellcome Trust ;
European Research Council
PMID:31361894 Free, Available for download, Freely available biotools:SpydrPick https://anaconda.org/bioconda/spydrpick
https://bio.tools/SpydrPick
SCR_018176 2026-02-14 02:03:28 2
SuperDCA
 
Resource Report
Resource Website
1+ mentions
SuperDCA (RRID:SCR_018175) data analysis software, software resource, data processing software, software application Software tool for global direct coupling analysis of input genome alignments. Implements variant of pseudolikelihood maximization direct coupling analysis, with emphasis on optimizations that enable its use on genome scale. May be used to discover co evolving pairs of loci.Used for genome wide epistasis analysis. Protein, sequence, alignment, analysis, genome, loci, epistasis Academy of Finland ;
Wellcome Trust ;
Royal Society ;
European Research Council
PMID:29813016 Free, Available for download, Freely available SCR_018175 Super Direct Coupling Analysis 2026-02-14 02:03:31 1
Codon Usage Analyzer
 
Resource Report
Resource Website
Codon Usage Analyzer (RRID:SCR_018500) Bio::CUA, Bio-CUA data analysis software, software resource, data processing software, software application Software tool as flexible and comprehensive codon usage analyzer. Used to analyze codon usage bias (CUB) and relevant problems. Codon usage analyzer, codon, codon usage bias, genome, gene, codon, sequence has parent organization: University of Rochester; New York; USA David and Lucile Packard Foundation ;
University of Rochester
DOI:10.1101/022814 Free, Freely available https://metacpan.org/release/Bio-CUA SCR_018500 2026-02-14 02:03:36 0
rVista
 
Resource Report
Resource Website
10+ mentions
rVista (RRID:SCR_018707) web service, analysis service resource, production service resource, service resource, data access protocol, software resource Web tool for analyzing regulatory potential of noncoding sequences. rVISTA web server is interconnected with TRANSFAC database, allowing users to either search for matrices present in TRANSFAC library collection or search for user defined consensus sequences. rVISTA 2.0 web server is used for high throughput discovery of cis-regulatory elements. Can process alignments generated by zPicture and blastz alignment programs or use pre-computed pairwise alignments of several vertebrate genomes available from ECR Browser and GALA database. Evolutionary analysis of transcription factor binding sites. Noncoding sequence, regulatory potential analysis, matrices search, TRANSFAC library collection, cis regulatory element, process alignment, zPicture, blastz, pairwise alignment, genome, analysis, transcription factor binding site, bio.tools is listed by: Debian
is listed by: bio.tools
works with: TRANSFAC
PMID:15215384 Free, Freely available biotools:rvista https://bio.tools/rvista SCR_018707 rVista 2.0 2026-02-14 02:03:40 30
FunCoup
 
Resource Report
Resource Website
1+ mentions
FunCoup (RRID:SCR_018711) web service, data or information resource, service resource, data access protocol, software resource, database Database of genome wide functional coupling networks. Provides tools to explore predicted networks and to retrieve detailed information about data underlying each prediction. Web service for functional coupling search. Genome, genome functional coupling network, coupling network, functional coupling, functional couplings search, gene identifier, genome data has parent organization: Karolinska Institute; Stockholm; Sweden Swedish Research Council ;
Stockholm University
PMID:24185702 Free, Freely available SCR_018711 2026-02-14 02:03:42 3
Preseq
 
Resource Report
Resource Website
10+ mentions
Preseq (RRID:SCR_018664) data processing software, data analysis software, software toolkit, software application, software resource Software package for predicting library complexity and genome coverage in high throughput sequencing. Aimed at predicting yield of distinct reads from genomic library from initial sequencing experiment. Predicting molecular complexity of sequencing libraries. Genome, high throughput sequencing, predicting library complexity, distinct yield prediction, genomic library, initial sequencing experiment, molecular complexity prediction, sequencing libraryb, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Stanford University; Stanford; California
PMID:23435259 Free, Freely available biotools:preseq https://github.com/smithlabcode/preseq
https://bio.tools/preseq
SCR_018664 2026-02-14 02:03:23 19
EnteroBase
 
Resource Report
Resource Website
100+ mentions
EnteroBase (RRID:SCR_019019) web service, data or information resource, data access protocol, software resource, database Integrated software environment that supports identification of global population structures within several bacterial genera that include pathogens. Web service for analyzing and visualizing genomic variation within bacteria. Genome database to enable to identify, analyse, quantify and visualise genomic variation within bacterial genera including Salmonella, Escherichia/Shigella, Clostridioides,Vibrio,Yersinia,Helicobacter,Moraxella. Bacteria, pathogen, genome, Illumina short read, genotype, core genome multilocus, sequence typing, cgMLST, cgMLST sequence, bacterial strain mapping, visualizing genomic variation, bio.tools, FASEB list is listed by: Debian
is listed by: bio.tools
has parent organization: University of Warwick; Coventry; United Kingdom
Biotechnology and Biological Sciences Research Council ;
Wellcome Trust
Restricted biotools:Enterobase https://bio.tools/EnteroBase SCR_019019 2026-02-14 02:03:47 233
GWAS: Catalog of Published Genome-Wide Association Studies
 
Resource Report
Resource Website
500+ mentions
GWAS: Catalog of Published Genome-Wide Association Studies (RRID:SCR_012745) GWASC data or information resource, database, catalog Catalog of published genome-wide association studies. Genome-wide set of genetic variants in different individuals to see if any variant is associated with trait and disease. Database of genome-wide association study (GWAS) publications including only those attempting to assay single nucleotide polymorphisms (SNPs). Publications are organized from most to least recent date of publication. Studies are identified through weekly PubMed literature searches, daily NIH-distributed compilations of news and media reports, and occasional comparisons with an existing database of GWAS literature (HuGE Navigator). Works with HANCESTRO ancestry representation. gene-wide association study, adult, genome, genome-wide association study, single nucleotide polymorphism, publication, literature, phenotype, trait, disease, loci, genetic variant, disorder, snp trait association is used by: NIF Data Federation
is used by: Schizo-Pi
is related to: PheWAS Catalog
is related to: Psychiatric Genomics Consortium
is related to: KOBAS
has parent organization: National Human Genome Research Institute
NHGRI U41 HG007823;
BBSRC ;
NHGRI U24 HG012542
PMID:19474294 Free, Freely available nif-0000-06666 http://www.genome.gov/gwastudies SCR_012745 A Catalog of Published Genome-Wide Association Studies, Catalog of Published GWAS, Catalog of published GWAS studies, NHGRI GWAS Catalog, Catalog of Published Genome-Wide Association Studies, GWAS and PGS Catalogs 2026-02-14 02:02:45 859
KEGG
 
Resource Report
Resource Website
10000+ mentions
KEGG (RRID:SCR_012773) KEGG web service, data analysis service, portal, analysis service resource, data or information resource, production service resource, service resource, data access protocol, software resource, topical portal, database Integrated database resource consisting of 16 main databases, broadly categorized into systems information, genomic information, and chemical information. In particular, gene catalogs in completely sequenced genomes are linked to higher-level systemic functions of cell, organism, and ecosystem. Analysis tools are also available. KEGG may be used as reference knowledge base for biological interpretation of large-scale datasets generated by sequencing and other high-throughput experimental technologies. model, pathway, functional hierarchy, module, cancer, disease, drug, drug classification, orthology, ortholog, genome, gene, protein, compound, classification, biochemical reaction, pathway, ligand, biosynthesis, pathway prediction, sequence, chemical structure, human, enzyme, database, molecular interaction, metabolism, metabolomics, cellular process, structure, drug development, reaction, cell is used by: NIF Data Federation
is used by: Arabidopsis Reactome
is used by: LIPID MAPS Proteome Database
is used by: globaltest
is used by: MitoMiner
is used by: Database for Annotation Visualization and Integrated Discovery
is used by: Biochemical Pathways Reaction Kinetics Database
is used by: Ultimate Rough Aggregation of Metabolic Map
is used by: GEMINI
is used by: In vivo - In silico Metabolite Database
is listed by: 3DVC
is listed by: OMICtools
is affiliated with: Kyoto Encyclopedia of Genes and Genomes Expression Database
is related to: PathCase Pathways Database System
is related to: ExplorEnz
is related to: NCBI BioSystems Database
is related to: Allen Institute Neurowiki
is related to: eQuilibrator
is related to: GeneTrail
is related to: KegTools
is related to: PRODORIC
is related to: hiPathDB - human integrated Pathway DB with facile visualization
is related to: METLIN
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: DAVID
is related to: ConsensusPathDB
is related to: ENZYME
is related to: FlyMine
is related to: Babelomics
is related to: SynSysNet
is related to: Cotton EST Database
is related to: Integrated Molecular Interaction Database
is related to: SEGS
is related to: INMEX
is related to: BioExtract
is related to: ClueGO
is related to: MalaCards
is related to: TrED
is related to: FunTree
is related to: MOPED - Model Organism Protein Expression Database
is related to: ProOpDB
is related to: KOBAS
is related to: GeneTerm Linker
is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
is related to: GeneCodis
is related to: FunNet - Transcriptional Networks Analysis
is related to: LegumeIP
is related to: Algal Functional Annotation Tool
is related to: aGEM
is related to: DINIES
is related to: KEGG PATHWAY Database
is related to: ShinyGO
is related to: KEGGREST
has parent organization: Kyoto University; Kyoto; Japan
has parent organization: University of Tokyo; Tokyo; Japan
is parent organization of: KegTools
works with: DIANA-mirPath
works with: MiMeDB
Japanese Ministry of Education Culture Sports Science and Technology MEXT ;
Japan Science and Technology Agency
PMID:22700311
PMID:22130871
PMID:22080510
PMID:19880382
PMID:19172790
PMID:18428742
PMID:18287706
PMID:18077471
PMID:16381885
PMID:16014746
PMID:14681412
PMID:12539951
PMID:11752249
PMID:10928937
PMID:10592173
PMID:9847135
Restricted nlx_31015, OMICS_01583, OMICS_03010, OMICS_01582, OMICS_03974, OMICS_05434, OMICS_05360 http://www.genome.jp/kegg/ SCR_012773 KEGG - Kyoto Encyclopedia of Genes and Genomes, Kyoto Encyclopedia of Genes and Genomes 2026-02-14 02:02:46 75877
IMGT - the international ImMunoGeneTics information system
 
Resource Report
Resource Website
500+ mentions
IMGT - the international ImMunoGeneTics information system (RRID:SCR_012780) IMGT data analysis service, portal, analysis service resource, data or information resource, production service resource, service resource, topical portal, database A high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility complex (MHC) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MHC superfamily (MhcSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates, serving as the global reference in immunogenetics and immunoinformatics. IMGT provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools. immunogenetics, immunoinformatics, immunoglobulin, antibody, t cell receptor, major histocompatibility complex, immunoglobulin superfamily, major histocompatibility complex superfamily, protein, immune system, sequence, genome, structure, monoclonal antibody, gold standard, bio.tools is listed by: bio.tools
is listed by: Debian
is related to: IMGT Repertoire
has parent organization: Montpellier 2 University; Montpellier; France
is parent organization of: IMGT/LIGM-DB
is parent organization of: IMGT/GENE-DB
is parent organization of: IMGT-ONTOLOGY
is parent organization of: IMGT/V-QUEST
is parent organization of: IMGT/HLA
CNRS ;
MESR ;
Reseau National des Genopoles ;
Region Languedoc-Roussillon ;
European Union BIOMED1 BIOCT930038;
European Union Biotechnology BIOTECH2 BIO4CT960037;
European Union 5th PCRDT Quality of Life and Management of Living Resources QLG2-2000-01287;
Agence Nationale de la recherche ANR BIOSYS06_135457;
EU ImmunoGrid IST-028069
PMID:18978023 nif-0000-03011, biotools:imgt https://bio.tools/imgt http://imgt.cines.fr SCR_012780 ImMunoGeneTics Information System, IMGT/LIGM, ImMunoGeneTics 2026-02-14 02:02:46 746
Flash Gviewer
 
Resource Report
Resource Website
1+ mentions
Flash Gviewer (RRID:SCR_012870) Flash GViewer software resource Flash GViewer is a customizable Flash movie that can be easily inserted into a web page to display each chromosome in a genome along with the locations of individual features on the chromosomes. It is intended to provide an overview of the genomic locations of a specific set of features - eg. genes and QTLs associated with a specific phenotype, etc. rather than as a way to view all features on the genome. The features can hyperlink out to a detail page to enable to GViewer to be used as a navigation tool. In addition the bands on the chromosomes can link to defineable URL and new region selection sliders can be used to select a specific chromosome region and then link out to a genome browser for higher resolution information. Genome maps for Rat, Mouse, Human and C. elegans are provided but other genome maps can be easily created. Annotation data can be provided as static text files or produced as XML via server scripts. This tool is not GO-specific, but was built for the purpose of viewing GO annotation data. Platform: Online tool visualization, chromosome, video, gene, qtl, genome, navitgation, phenotype, ontology or annotation visualization is listed by: Gene Ontology Tools
is related to: Gene Ontology
has parent organization: Medical College of Wisconsin; Wisconsin; USA
Free for academic use nlx_149333 http://gmod.org/flashgviewer SCR_012870 2026-02-14 02:02:24 2

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. Neuroscience Information Framework Resources

    Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.