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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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AutoStereota Resource Report Resource Website 1+ mentions |
AutoStereota (RRID:SCR_022330) | data or information resource, instrument resource, portal, project portal | Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. | OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2018.10.013 | Free, Freely available | https://github.com/liang-bo/AutoStereota | SCR_022330 | 2026-02-13 10:58:41 | 2 | ||||||||
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Pi-based Remote Acquisition Technology for Motion Capture project Resource Report Resource Website |
Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) | PiRATeMC | data or information resource, instrument resource, portal, project portal | Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub. | OpenBehavior, Instrument, behavior measurement, video analysis, realtime recording and analysis, video recording system, acquiring video data, open source recording system |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture |
DOI:10.1101/2021.07.23.453577 | Free, Freely available | SCR_022325 | Pi-based Remote Acquisition Technology for Motion Capture | 2026-02-13 10:58:47 | 0 | |||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | data or information resource, instrument resource, portal, project portal | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | Raspberry Pi based auditory stimulus generator project | 2026-02-13 10:58:41 | 0 | |||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | data analysis software, software resource, data processing software, software application | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | ABA project | 2026-02-13 10:58:41 | 0 | ||||||
|
FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | data visualization software, data processing software, data analysis software, software application, software resource | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab https://flybrainlab.fruitflybrain.org/ |
SCR_022337 | 2026-02-13 10:58:41 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | data analysis software, software resource, data processing software, software application | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-02-13 10:58:47 | 0 | ||||||||
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Modular LED Displays project Resource Report Resource Website |
Modular LED Displays project (RRID:SCR_022704) | data or information resource, instrument resource, portal, project portal | Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. | Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments |
is listed by: OpenBehavior has parent organization: Howard Hughes Medical Institute |
DOI:10.1101/2022.08.02.502550 | Free, Freely available | https://reiserlab.github.io/Modular-LED-Display/ https://github.com/reiserlab/Modular-LED-Display |
SCR_022704 | Modular LED Displays | 2026-02-13 10:58:46 | 0 | |||||||
|
Pi USB Cam project Resource Report Resource Website |
Pi USB Cam project (RRID:SCR_022834) | data or information resource, instrument resource, portal, project portal | Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. | OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals |
is listed by: OpenBehavior has parent organization: University of Illinois at Chicago; Illinois; USA |
DOI:10.1523/ENEURO.0224-22.2022 | Free, Freely available | SCR_022834 | Pi USB Cam system, Pi USB Cam | 2026-02-13 10:58:57 | 0 | ||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data visualization software, software resource, data processing software, software application | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-02-13 10:58:48 | 1 | ||||||||
|
PavCA project Resource Report Resource Website |
PavCA project (RRID:SCR_022508) | PavCA | data or information resource, portal, topical portal | Project related to tracking behavior. Used to identify subgroups of individuals that differentially attribute incentive value to food cue. Includes apparatus for studying Pavlovian conditioned approach behavior. Customized rat PavCA chambers are constructed based on modular devices purchased from Med-Associates. Code used to operate equipment and collect data was written using Med-Associates’ MEDSTATE programming language. This program is then loaded into Med-PC V operating program, also created by Med-Associates. | Behavior, behavior analysis, Pavlovian conditioning, apparatus, Pavlovian conditioned approach, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: University at Buffalo; New York; USA |
Free, Freely available | SCR_022508 | Pavlovian Conditioned Approach, PavCA | 2026-02-13 10:58:51 | 0 | ||||||||
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Variational Embedding of Animal Motion Resource Report Resource Website 1+ mentions |
Variational Embedding of Animal Motion (RRID:SCR_022477) | VAME | data visualization software, software resource, data processing software, software application | Software Python tool to cluster behavioral signals obtained from pose estimation tools. Unsupervised probabilistic deep learning framework capable of finding behavioral motifs in pose estimation data. Capable of augmenting quantitative behavioral analyses of data derived from standard pose-estimation software packages. Written based on core functions from DeepLabCut, and readily works with pose data from that package. Can also work with data from other pose estimation packages such as SLEAP. | OpenBehavior, vame, variational embedding of animal motion, pytorch, pose estimation |
is listed by: OpenBehavior is related to: DeepLabCut is related to: SLEAP, LEAP and MotionMapper project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/vame/ | SCR_022477 | Variational Animal Motion Embedding, VAME: Variational Embedding of Animal Motion | 2026-02-13 10:58:50 | 2 | |||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | data visualization software, software resource, data processing software, software application | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | 2026-02-13 10:58:43 | 0 | ||||||||||
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DANNCE Resource Report Resource Website 1+ mentions |
DANNCE (RRID:SCR_023061) | data visualization software, data processing software, software application, 3d visualization software, software resource | Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking. | OpenBehavior, track animals, pose information, 3D positions, video data, multiple cameras, 3D markerless pose estimation and tracking, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=DANNCE | SCR_023061 | 3-Dimensional Aligned Neural Network for Computational Ethology | 2026-02-13 10:58:56 | 1 | ||||||||
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3D Printed Superfusion Chamber Resource Report Resource Website |
3D Printed Superfusion Chamber (RRID:SCR_022901) | data or information resource, instrument resource, portal, project portal | Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service. | Open Behavior, electrophysiological and neuroimaging recordings, 3D-printed tools, superfusion chamber, brain presser, animal stand | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-22.2022 | https://gitlab.com/lab-equipment-assemblies1/superfusion-chamber/-/tree/master | SCR_022901 | 3D Printed Superfusion Chamber project | 2026-02-13 10:58:49 | 0 | ||||||||
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Stytra Resource Report Resource Website |
Stytra (RRID:SCR_021500) | software resource, software toolkit | Open source software Python package to control stimulation and track behaviour.Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. | Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior |
is listed by: OpenBehavior is related to: Stytra project |
DOI:10.1371/journal.pcbi.1006699 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/stytra/ | SCR_021500 | 2026-02-13 10:58:32 | 0 | ||||||||
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Worm Behavior Platform Resource Report Resource Website |
Worm Behavior Platform (RRID:SCR_021501) | software resource, software toolkit | Software tool as repository of documentation, software, and discussions to share worm tracking data and analysis routines.Open access repository for storing, accessing, and filtering data; interchange format for notating single or multi worm behavior; and file formats written in Python for feature extraction, review, and analysis. | Worm behavior data analysis, worm behavior data sharing, worm behavior data, Caenorhabditis elegans behavioral data, Worm tracker Commons Object Notation, OpenBehavior |
is listed by: OpenBehavior is related to: Worm Behavior Platform project |
DOI:10.1038/s41592-018-0112-1 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/worm-behavior-platform/ | SCR_021501 | Tracker Commons | 2026-02-13 10:58:33 | 0 | |||||||
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Behavioral Observation Research Interactive Software Resource Report Resource Website 1+ mentions |
Behavioral Observation Research Interactive Software (RRID:SCR_021509) | BORIS | software resource, standalone software, software application | Open source event logging software for video/audio coding and live observations.Multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations. | Specific coding environment, computer based review, previously recorded videos review, live observations review, OpenBehavior |
is listed by: OpenBehavior is related to: Behavioral Observation Research Interactive Software project |
DOI:10.1111/2041-210x.12584 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/boris/ | SCR_021509 | 2026-02-13 10:58:33 | 9 | |||||||
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ArControl Resource Report Resource Website 1+ mentions |
ArControl (RRID:SCR_021605) | software resource, standalone software, software application | Software tool as Arduino UNO/Mega based, visual programming and real-time behavioral platform for neuroscience. It can run Go/No-Go, 2AFPC and Optogenetic stimulation tasks. Stand alone and intuitive Gaphical User Interface application.Part of ArControl system. | visual programming, real-time behavioral platform, control devices, deliver stimulation, monitor behavioral response, OpenBehavior |
is listed by: OpenBehavior is related to: ArControl project |
DOI:10.3389/fnbeh.2017.00244 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/arcontrol/ | SCR_021605 | 2026-02-13 10:58:35 | 1 | ||||||||
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BonVision Resource Report Resource Website 1+ mentions |
BonVision (RRID:SCR_021534) | software resource, software toolkit | Open source software package for creating and controlling visual environments.Software package for Bonsai which allows for control of 2D and 3D environments. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision project |
DOI:10.1101/2020.03.09.983775 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonvision/ | SCR_021534 | 2026-02-13 10:58:32 | 1 | ||||||||
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FaceSync Resource Report Resource Website |
FaceSync (RRID:SCR_021396) | software resource, software toolkit | Open source software Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions.Framework for recording facial expressions with head mounted cameras. | Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools |
is listed by: OpenBehavior is related to: FaceSync project |
PMID:32185017 | Free, Available for download, Freely Available | biotools:FaceSync | https://edspace.american.edu/openbehavior/project/facesync/ https://bio.tools/FaceSync |
SCR_021396 | 2026-02-13 10:58:32 | 0 |
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