Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Keywords:bio.tools (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

1,647 Results - per page

Show More Columns | Download Top 1000 Results

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Network Analysis, Visualization and Graphing TORonto
 
Resource Report
Resource Website
50+ mentions
Network Analysis, Visualization and Graphing TORonto (RRID:SCR_008373) NAViGaTOR software application, data processing software, d visualization software, software resource, data visualization software A software package for visualizing and analyzing protein-protein interaction networks. NAViGaTOR can query OPHID / I2D - online databases of interaction data - and display networks in 2D or 3D. To improve scalability and performance, NAViGaTOR combines Java with OpenGL to provide a 2D/3D visualization system on multiple hardware platforms. NAViGaTOR also provides analytical capabilities and supports standard import and export formats such as GO and the Proteomics Standards Initiative (PSI). NAViGaTOR can be installed and run on Microsoft Windows, Linux / UNIX, and Mac OS systems. NAViGaTOR is written in Java and uses JOGL (Java bindings for OpenGL) to support scalability, highlighting or suppressing of information, and other advanced graphic approaches. fly, algorithm, capacity, graphical, graphing, human, interaction, interactome, intersection, mouse, network, node, protein, proteomic, rat, worm, yeast, graphing application, 2d visualization, 3d visualization, visualization, biological network, protein-protein interaction, gene, bio.tools is listed by: Debian
is listed by: bio.tools
is related to: Gene Ontology
has parent organization: University of Toronto; Ontario; Canada
Genome Canada ;
Ontario Genomics Institute ;
Canada Research Chair Program ;
Ontario Research Fund Research Excellence ;
Canada Foundation for Innovation 12301;
Canada Foundation for Innovation 203383
PMID:19837718 Freely-downloadable for academic and not-for-profit institutions nif-0000-25610, biotools:navigator https://bio.tools/navigator SCR_008373 NAViGaTOR - Network Analysis Visualization and Graphing TORonto, NAViGaTOR - Network Analysis Visualization & Graphing TORonto 2026-02-17 10:01:21 52
Eukaryote Genes
 
Resource Report
Resource Website
10+ mentions
Eukaryote Genes (RRID:SCR_008617) data or information resource, database Provides summary of gene and genomic information from eukaryotic organism databases. This includes gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information, links to extended gene information. eukaryote, eukaryotic gene ontology, eukaryotic genome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Indiana University; Indiana; USA
Indiana University Center for Genomics and Bioinformatics ;
NSF DBI 0090782;
NSF DBI 9982851
Free, Freely available nif-0000-31969, biotools:eugenes, SCR_013197, nif-0000-02818 https://bio.tools/eugenes SCR_008617 euGenes 2026-02-17 10:01:08 17
SIFT
 
Resource Report
Resource Website
10000+ mentions
SIFT (RRID:SCR_012813) SIFT data access protocol, production service resource, analysis service resource, source code, service resource, software resource, web service, data analysis service Data analysis service to predict whether an amino acid substitution affects protein function based on sequence homology and the physical properties of amino acids. SIFT can be applied to naturally occurring nonsynonymous polymorphisms and laboratory-induced missense mutations. (entry from Genetic Analysis Software) Web service is also available. gene, genetic, genomic, amino acid, substitution, protein function, coding region, single nucleotide variant, coding indel, deletion, insertion, sequence, protein, bio.tools is listed by: OMICtools
is listed by: Genetic Analysis Software
is listed by: Debian
is listed by: bio.tools
is listed by: SoftCite
is related to: SIFT 4G
has parent organization: Genome Institute of Singapore; Singapore; Singapore
has parent organization: J. Craig Venter Institute
Agency for Science Technology and Research ;
NIGMS GM29009
PMID:19561590
PMID:12824425
PMID:11337480
DOI:10.1038/nprot.2009.86
Non-commercial biotools:sift, OMICS_00137, nlx_154618 http://sift.jcvi.org/
https://bio.tools/sift
https://sources.debian.org/src/sift/
http://sift.bii.a-star.edu.sg/SIFT.html SCR_012813 Sorting Intolerant From Tolerant 2026-02-17 10:02:18 10223
MACS
 
Resource Report
Resource Website
1000+ mentions
MACS (RRID:SCR_013291) MACS data analysis software, software application, data processing software, software resource Software Python package for identifying transcript factor binding sites. Used to evaluate significance of enriched ChIP regions. Improves spatial resolution of binding sites through combining information of both sequencing tag position and orientation. Can be used for ChIP-Seq data alone, or with control sample with increase of specificity. identify, transcript, factor, binding, site, model, based, analysis, CHIP Seq, short, read, sequencer, protein, DNA, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is listed by: SoftCite
has parent organization: Dana-Farber Cancer Institute
NHGRI HG004069;
NHGRI HG004270;
NIDDK DK074967
PMID:18798982
DOI:10.1186/gb-2008-9-9-r137
Free, Available for download, Freely available OMICS_00446, biotools:macs https://bio.tools/macs
https://sources.debian.org/src/macs/
SCR_013291 MACS - Model-based Analysis for ChIP-Seq, Model-based Analysis for ChIP-Seq, MACS2 2026-02-17 10:02:23 1325
GeneProf
 
Resource Report
Resource Website
10+ mentions
GeneProf (RRID:SCR_012927) GeneProf data access protocol, data or information resource, production service resource, analysis service resource, database, service resource, software resource, web service, data analysis service A database of curated, integrated and reusable high-throughput genomics experiments and a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; Next-Generation Sequencing or NGS). Algorithm developers and computer programmers can develop their own modules and extend the functionality of GeneProf. Existing software can be easily wrapped and integrated in the GeneProf framework and data from GeneProf may be used externally. next-generation sequencing, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Edinburgh; Scotland; United Kingdom
MRC ;
European Union Framework 7 Project EuroSyStem
PMID:22205509
PMID:24174536
Acknowledgement requested biotools:geneprof, OMICS_00442 https://bio.tools/geneprof SCR_012927 2026-02-17 10:02:20 15
PolyPhen: Polymorphism Phenotyping
 
Resource Report
Resource Website
1000+ mentions
PolyPhen: Polymorphism Phenotyping (RRID:SCR_013189) PolyPhen, PolyPhen-2, POLYPHEN software application, data processing software, data analysis software, software resource, simulation software Software tool which predicts possible impact of amino acid substitution on structure and function of human protein using straightforward physical and comparative considerations. PolyPhen-2 is new development of PolyPhen tool for annotating coding nonsynonymous SNPs. annotate, nonsynonymous, SNP, predict, coding, damaging, effect, missense, mutation, sequence, variant, phenotype, genetic, disease, exon, protein, coding, fraction, genome, bio.tools is listed by: Genetic Analysis Software
is listed by: Debian
is listed by: bio.tools
is related to: OMICtools
has parent organization: Harvard University; Cambridge; United States
PMID:20354512
PMID:23315928
SCR_013200, OMICS_00136, nlx_154540, nif-0000-21329, biotools:polyphen, SCR_013238 https://bio.tools/polyphen http://www.bork.embl-heidelberg.de/PolyPhen/ SCR_013189 PolyPhen, POLYPHEN, PolyPhen-2, Polymorphism Phenotyping, Polymorphism Phenotyping v2 2026-02-17 10:02:22 4151
IUPHAR/BPS Guide to Pharmacology
 
Resource Report
Resource Website
1000+ mentions
IUPHAR/BPS Guide to Pharmacology (RRID:SCR_013077) IUPHAR Database, IUPHAR-DB, IUPHAR GPCR, IUPHAR RECEPTOR narrative resource, data or information resource, database, standard specification, portal Portal and searchable database of pharmacological information. Information is presented at two levels, the initial view or landing pages for each target family provide expert-curated overviews of the key properties and the available selective ligands and tool compounds. For selected targets, more detailed introductory chapters for each family are available along with curated information on the pharmacological, physiological, structural, genetic and pathophysiogical properties of each target. pharmacology, drug discovery, portal, guide, physiology, molecular structure, bio.tools, FASEB list is listed by: Debian
is listed by: bio.tools
has parent organization: NC-IUPHAR
Wellcome Trust PMID:21087994 nif-0000-03056, biotools:iuphar-db, r3d100013308 https://bio.tools/iuphar-db
https://doi.org/10.17616/R31NJMRG
http://www.iuphar-db.org SCR_013077 International Union of Pharmacology Database, International Union of Basic and Clinical Pharmacology Database 2026-02-17 10:02:21 2259
Pathway Tools
 
Resource Report
Resource Website
10+ mentions
Pathway Tools (RRID:SCR_013786) data management software, software application, software resource, software toolkit A software application which supplies software tools to develop and maintain pathway/genome databases (PGDBs). These include the development of organism-specific databases, metabolic reconstruction and metabolic-flux modeling, scientific visualization and web publishing of organism-specific databases, analysis of gene-expression and metabolomics datasets, comparative genome and pathway analyses, and analysis of biological networks. software application, bioinformatics, software, software system, pathway genome database, PGDB, bio.tools is used by: BioCyc
is used by: EcoCyc
is used by: MetaCyc
is listed by: BioCyc
is listed by: bio.tools
is listed by: Debian
is related to: BioCyc
is related to: MetaCyc
is related to: EcoCyc
is related to: HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism
is related to: BioCyc
NIGMS GM077678;
NIGMS GM080746;
NIGMS GM75742
DOI:10.1093/bib/bbp043 biotools:pathway_tools http://bioinformatics.ai.sri.com/ptools/ptools-overview.html
https://bio.tools/pathway_tools
SCR_013786 Pathway Tools Bioinformatics Software, Pathway Tools Software 2026-02-17 10:02:37 23
Metabolomics Workbench
 
Resource Report
Resource Website
500+ mentions
Metabolomics Workbench (RRID:SCR_013794) MetWB data or information resource, service resource, data repository, storage service resource Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops. repository, metabolomics, database, funding, training, protocol, bio.tools, FASEB list is used by: NIH Heal Project
is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
lists: NIH Metabolomics program
lists: MetaCore
lists: JMP
lists: STATISTICA
lists: Spotfire
lists: Coordination of Standards in Metabolomics
lists: MetaboLights
lists: MetabolomeXchange
lists: Metabolomics Society
lists: Birmingham Metabolite Library
lists: Glycan Mass Spectral Database (GMDB)
lists: Mass Spectral Library
lists: mzCloud
lists: MetabolomeExpress
lists: Spectral Database System (SDBS)
lists: CTSgetR
lists: Hierarchical Clustering
lists: imDEV
lists: Linear Discriminant Analysis
lists: Principal Components Analysis
lists: mwtabR
lists: 3Omics
lists: ACD/ NMR Processor
lists: NIST Mass Spectrometry Data Center
lists: Chemical Translation Service
lists: Chenomx NMR Suite
lists: DeviumWeb
lists: MBRole
lists: MetaMapR
lists: MetaP
lists: Metscape
lists: SIMCA
lists: TeachingDemos
is listed by: NIH Data Sharing Repositories
is listed by: bio.tools
is listed by: Debian
is listed by: re3data.org
is listed by: DataCite
has parent organization: University of California; California; USA
is parent organization of: Metabolomics Workbench Metabolite Database
NIH Free, Freely available biotools:Metabolomics_Workbench https://bio.tools/Metabolomics_Workbench
https://api.datacite.org/dois?prefix=10.21228
SCR_013794 , Metabolomics Workbench, MetWB, UCSD Metabolomics Workbench, Metabolomics Workbench (MetWB) 2026-02-17 10:02:03 534
OsiriX Medical Imaging Software
 
Resource Report
Resource Website
1000+ mentions
OsiriX Medical Imaging Software (RRID:SCR_013618) data visualization software, data processing software, software application, software resource :OsiriX is an image processing software dedicated to DICOM images (.dcm / .DCM extension) produced by medical equipment (MRI, CT, PET, PET-CT, ...) and confocal microscopy (LSM and BioRAD-PIC format). It can also read many other file formats: TIFF (8,16, 32 bits), JPEG, PDF, AVI, MPEG and Quicktime. It is fully compliant with the DICOM standard for image comunication and image file formats. OsiriX is able to receive images transferred by DICOM communication protocol from any PACS or medical imaging modality (STORE SCP - Service Class Provider, STORE SCU - Service Class User, and Query/Retrieve) . OsiriX has been specifically designed for navigation and visualization of multimodality and multidimensional images: 2D Viewer, 3D Viewer, 4D Viewer (3D series with temporal dimension, for example: Cardiac-CT) and 5D Viewer (3D series with temporal and functional dimensions, for example: Cardiac-PET-CT). The 3D Viewer offers all modern rendering modes: Multiplanar reconstruction (MPR), Surface Rendering, Volume Rendering and Maximum Intensity Projection (MIP). All these modes support 4D data and are able to produce image fusion between two different series (for example: PET-CT). Osirix is at the same time a DICOM PACS workstation for medical imaging and an image processing software for medical research (radiology and nuclear imaging), functional imaging, 3D imaging, confocal microscopy and molecular imaging. : bio.tools is listed by: bio.tools
is listed by: Debian
biotools:osirix, nif-0000-00340 https://bio.tools/osirix SCR_013618 OsiriX 2026-02-17 10:02:24 1374
Membrane Protein Explorer
 
Resource Report
Resource Website
10+ mentions
Membrane Protein Explorer (RRID:SCR_014077) MPEx data analysis software, software application, data processing software, software resource Software which predicts topology and other features of membrane proteins through hydropathy plots based on thermodynamic and biological principles. This version of MPEx uses two types of hydropathy scales: Experiment-based whole-residue partitioning scales and experiment-based biological partitioning scales. The whole-residue partitioning scales predict the transmembrane (TM) segments of membrane proteins of known structure. The biological scale utilizes current knowledge of the code the Sec61 translocon to identify TM segments. MPEx is a Java program (not a Java applet) deployed using Java Web Start, which is part of the Java Runtime Environment. membrane protein, hydropathy plot, topology, software, java, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: University of California at Irvine; California; USA
PMID:19785006 Available to the research community, Requires version 7 or higher of Java Runtime Environment biotools:mpex https://bio.tools/mpex SCR_014077 Membrane Protein Explorer (MPEx) 2026-02-17 10:02:32 34
Buccaneer
 
Resource Report
Resource Website
100+ mentions
Buccaneer (RRID:SCR_014221) software application, data processing software, data analysis software, software resource, sequence analysis software Software which performs statistical chain tracing by identifying connected alpha-carbon positions using a likelihood-based density target. The target distributions are generated by a simulation calculation using a known reference structure for which calculated phases are available. The success of the method is dependent on the features of the reference structure matching those of the unsolved work structure. For almost all cases, a single reference structure can be used, with modifications automatically applied to the reference structure to match its features to the work structure. statistical chain tracing, alpha carbon position, sequence analysis software, bio.tools is listed by: Debian
is listed by: bio.tools
PMID:16929101 biotools:buccaneer https://bio.tools/buccaneer SCR_014221 buccaneer - Statistical protein chain tracing 2026-02-17 10:02:35 332
FluoRender
 
Resource Report
Resource Website
100+ mentions
FluoRender (RRID:SCR_014303) software application, data processing software, data analysis software, software resource, data visualization software Interactive rendering tool for confocal microscopy data visualization. Combines rendering of multi-channel volume data and polygon mesh data, where properties of each dataset can be adjusted independently and quickly. Designed for neurobiologists, allowing them to better visualize confocal data from fluorescently-stained brains, but it is also useful for other biological samples. Features include feature tracking, 3D measurement tools, multiple render modes for multi-channel confocal data, and volume paint selection and segmentation. rendering tool, confocal microscopy data visualization, neurobiology, fluorescent stain, brain, bio.tools is used by: VVD Viewer
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Utah; Utah; USA
Free, Available for download, Freely available biotools:fluorender https://bio.tools/fluorender SCR_014303 FluoRender Visualization 2026-02-17 10:02:09 127
NiftyFit
 
Resource Report
Resource Website
1+ mentions
NiftyFit (RRID:SCR_014301) software library, software resource, software toolkit Software package for multi-parametric model-fitting of 4D Magnetic Resonance Imaging data. Software library to facilitate voxel wise fitting on a number of datatypes including T1 and T2 relaxometry, Arterial Spin Labeled MRI, Diffusion Weighted Imaging and Dynamic Contrast Enhanced MRI. T software library, voxel wise fit, relaxometry, mri, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: University College London; London; United Kingdom
MRC ;
NIHR ;
EPSRC ;
NIHR BRC
PMID:26972806 Free, Available for download, Freely available biotools:niftyfit, BioTools:niftyfit https://github.com/KCL-BMEIS/niftyreg
https://bio.tools/niftyfit
https://bio.tools/niftyfit
https://bio.tools/niftyfit
SCR_014301 2026-02-17 10:02:36 9
SortMeRNA
 
Resource Report
Resource Website
500+ mentions
SortMeRNA (RRID:SCR_014402) software application, data processing software, data analysis software, software resource, sequence analysis software Sequence analysis software for filtering, mapping and OTU-picking NGS reads. SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. sequence analysis software, filter, map, otu picking, ngs, sort, rna, rrna, bio.tools uses: QIIME
is listed by: Debian
is listed by: bio.tools
PMID:23071270
DOI:10.1093/bioinformatics/bts611
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_02619, biotools:sortmerna https://bio.tools/sortmerna
https://sources.debian.org/src/sortmerna/
SCR_014402 2026-02-17 10:02:11 621
Mascot
 
Resource Report
Resource Website
5000+ mentions
Mascot (RRID:SCR_014322) software application, standalone software, data processing software, software resource, signal processing software A software package and server used to identify and characterize proteins from primary sequence databases using mass spectrometry data. Mascot integrates peptide mass fingerprinting, sequence querying, and MS/MS ion searching in order to search for proteins in databases like SwissProt, NCBInr, EMBL EST divisions, contaminants, and cRAP. If a license is purchased, users may: search data sets that exceed the 1200 spectrum limit of the free version; set up automated, high throughput work; add and edit proteins and quantification methods; and search a preferred collection of sequence databases. The software package works with instruments from AB Sciex, Agilent, Bruker, Jeol, Shimadzu, Thermo Scientific, and Waters. server, software package, mass spectrometry, protein, identify, characterize, bio.tools is used by: MSQuant
is listed by: bio.tools
is listed by: Debian
is listed by: SoftCite
is related to: MascotScan
Free, Can be licensed for in-house use, Available for download biotools:MASCOT http://www.matrixscience.com/search_intro.html
https://bio.tools/MASCOT
SCR_014322 Mascot Server 2026-02-17 10:02:37 6896
OpenWorm
 
Resource Report
Resource Website
10+ mentions
OpenWorm (RRID:SCR_014650) software application, web application, software resource, simulation software 3D web browser that allows users to simulate and dissect virtual C. elegans. Users can explore the anatomy of a virtual, 3D worm by zooming in and out, rotating the model, and viewing the worm's different layers. NeuroML format and connector are used to enhance the simulation, and supporting programs and code are available for coders. simulation, model, web application, web browser, c elegans, nematode, worm, roundworm, open source, 3d, dissect, anatomy, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: WormBase
is hosted by: GitHub
PMID:25404913
DOI:10.3389/fncom.2014.00137
Open source, Code is available on GitHub, Available on the App Store SCR_014984, biotools:OpenWorm https://bio.tools/OpenWorm SCR_014650 OpenWorm Browser, Open Worm 2026-02-17 10:02:15 21
ProtTest
 
Resource Report
Resource Website
1000+ mentions
ProtTest (RRID:SCR_014628) software application, web application, data processing software, data analysis software, software resource Web-based software used for the selection of best-fit models of protein evolution., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. bioinformatics, model, best fit model, protein evolution, amino acid replacement, server, bio.tools uses: PhyML
is listed by: Debian
is listed by: bio.tools
is listed by: OMICtools
is listed by: SoftCite
is hosted by: GitHub
PMID:15647292
DOI:10.1093/bioinformatics/btr088
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_11547, biotools:prottest https://github.com/ddarriba/prottest3
https://bio.tools/prottest
https://sources.debian.org/src/prottest/
SCR_014628 2026-02-17 10:02:43 1981
CummeRbund
 
Resource Report
Resource Website
100+ mentions
CummeRbund (RRID:SCR_014568) software application, data processing software, data analysis software, software resource, sequence analysis software Software R package used for simplifying and analyzing Cufflink RNA-Seq output. This program takes various output files from a cuffdiff run and creates a SQLite database of the results that will describe the appropriate relationships between the genes, transcripts, transcription start sites and CDS regions. r software, cufflink, rna-seq, sqlite, gene, transcript, transcription start site, cds region, r, rnaseq, rna seq, bio.tools, FASEB list uses: R Project for Statistical Computing
is listed by: Debian
is listed by: bio.tools
is listed by: OMICtools
has parent organization: Massachusetts Institute of Technology; Massachusetts; USA;
has parent organization: Harvard University; Cambridge; United States
Free, Freely available biotools:cummerbund, OMICS_07349 https://bio.tools/cummerbund
https://sources.debian.org/src/r-bioc-cummerbund/
SCR_014568 2026-02-17 10:02:42 361
ggplot2
 
Resource Report
Resource Website
10000+ mentions
ggplot2 (RRID:SCR_014601) data visualization software, data processing software, software application, software resource Open source software package for statistical programming language R to create plots based on grammar of graphics. Used for data visualization to break up graphs into semantic components such as scales and layers. plotting system, r, graphics, data analysis, multi-layered graphics, bio.tools uses: ggpubr
uses: ggeffects
uses: ggsignif
is used by: riboWaltz
is used by: ClustVis
is used by: ggrepel
is used by: PlotsOfData
is used by: EnhancedVolcano
is used by: tidyverse
is used by: ComplexUpset
is used by: ggfortify
is used by: forestmodel
is used by: ggvenn
is used by: metaviz
is used by: ggVennDiagram
is listed by: Debian
is listed by: bio.tools
is related to: R Project for Statistical Computing
is related to: ggraph
is related to: ggbiplot
is related to: GGally
has parent organization: CRAN
works with: Plotly
works with: cowplot
works with: ggalluvial
works with: ggforce
works with: ggbreak
works with: ggrastr
works with: tidybayes
works with: ggsurvfit
works with: ggtext
works with: ggsci
Free, Freely available biotools:ggplot2 http://docs.ggplot2.org/current/
https://github.com/tidyverse/ggplot2
https://bio.tools/ggplot2
http://ggplot2.org/ SCR_014601 grammar of graphics plot2 2026-02-17 10:02:14 36105

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. Neuroscience Information Framework Resources

    Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.