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http://sourceforge.net/projects/cnv/

Software for a web-enabled platform for analyzing genome variation such as copy number variation (CNV).

Proper citation: CNV Workshop (RRID:SCR_012635) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/motifRG.html

Software tools for discriminative motif discovery using regression methods.

Proper citation: motifRG (RRID:SCR_012602) Copy   

•   Source: SciCrunch Registry

http://www.aan.com/

An international professional association of 24,000 neurologists and neuroscience professionals dedicated to promoting the highest quality patient-centered neurologic care. They provide guidance and inspiration through education, information, policy development and advocacy for our members and their patients. The Academy''s professional website is only one of the domains associated with the AAN: * TheBrainMatters.org, public & patient education website * m.AAN.com, mobile AAN.com for members * Neurology journal * Neurology Now, patient magazine * Neurology Today, magazine for neurology professionals The AAN is committed to bringing its members the highest quality continuing medical education and professional education opportunities. The Academy''s Education programs cover the spectrum of neurological disorders, from the most prevalent to newly emerging issues. The AAN also provides a wide range of program formats, including in-depth print, convenient online, and hands-on workshop options. The AAN Annual Meeting brings together more than 10,000 neuroscience professionals for one of the world''s largest neurology gatherings. It has long been a leading showcase for the latest developments in scientific research, and the place to honor peers at the forefront of the work. The AAN offers a variety of publications, news, blogs, jobs, and practice guidelines.

Proper citation: American Academy of Neurology (RRID:SCR_012739) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/MiRaGE.html

Software package that contains functions for inference of target gene regulation by miRNA, based on only target gene expression profile.

Proper citation: MiRaGE (RRID:SCR_012738) Copy   

•   Source: SciCrunch Registry

https://www.tglabs.com/home.html

TG Labs Company, located in Colorado, has two divisions Technical division and Industrial division. Technical Division operates scientific, medical and chemical discovery laboratory in Englewood, Colorado. This division also develops special devices, equipment and processes for the medical, chemical and environmental industries. We offer proven solutions from concept through full scale production, including regulatory standards.

Proper citation: TG Labs (RRID:SCR_012581) Copy   

•   Source: SciCrunch Registry

http://www.noble.org/

The Samuel Roberts Noble Foundation is an independent, nonprofit institute headquartered in Ardmore, Okla. Founded in 1945, the Noble Foundation conducts direct operations, including assisting farmers and ranchers, and conducting plant science research and agricultural programs, to enhance agricultural productivity regionally, nationally and internationally. Employing more than 360 persons, the Noble Foundation conducts its operations through the activities of three operating divisions: * Agricultural Division: Serving a 47-county area within a 100-mile radius of the Noble Foundation''s headquarters in Ardmore, Okla., the Agricultural Division assists more than 1,700 regional farmers and ranchers in achieving their individual financial, production, stewardship and quality-of life goals. * Plant Biology Division: The Plant Biology Division conducts basic biochemical, genetic and genomic plant research for the purpose of improving crop productivity and value, and enhancing animal and human health. * Forage Improvement Division: The Forage Improvement Division translates basic plant science research into tangible plant varieties. Within the institution, the Forage Improvement Division serves as a link between the discoveries in the laboratory and the field, where such discoveries are intended to enhance agricultural outcomes in Oklahoma and around the world. The coordinated efforts of these operating divisions enable the Noble Foundation agricultural specialists and scientists to move science and innovation from the laboratory to the field, giving life to discovery and improving agriculture in Oklahoma, in the United States and around the world.

Proper citation: Samuel Roberts Noble Foundation (RRID:SCR_012794) Copy   

•   Source: SciCrunch Registry

http://english.cas.cn/

Public university for graduate education, under the direct leadership of the Chinese Academy of Sciences.

Proper citation: Chinese Academy of Sciences; Beijing; China (RRID:SCR_012797) Copy   

•   Source: SciCrunch Registry

http://www.defense.gov/

Executive branch department of the federal government charged with coordinating and supervising all agencies and functions of the government directly related to national security and the United States Armed Forces.

Proper citation: U.S. Department of Defense (RRID:SCR_012712) Copy   

•   Source: SciCrunch Registry

http://gnu.org

Unix-like operating system that is free software. GNU (more precisely, GNU/Linux systems) are entirely free software. The GNU Project was launched in 1984 to develop the GNU system. A Unix-like operating system is a software collection of applications, libraries, and developer tools, plus a program to allocate resources and talk to the hardware, known as a kernel. The Hurd, GNU''s own kernel, is some way from being ready for daily use. Thus, GNU is typically used today with a kernel called Linux. This combination is the GNU/Linux operating system. GNU/Linux is used by millions, though many call it Linux by mistake.

Proper citation: GNU.org (RRID:SCR_012764) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/CexoR.html

Software for strand specific peak-pair calling in ChIP-exo replicates.

Proper citation: CexoR (RRID:SCR_012769) Copy   

•   Source: SciCrunch Registry

http://tare.medisin.ntnu.no/motiflab/

Software for a general workbench for analyzing regulatory sequence regions and discovering transcription factor binding sites and cis-regulatory modules.

Proper citation: MotifLab (RRID:SCR_012649) Copy   

•   Source: SciCrunch Registry

http://www.imcb.a-star.edu.sg/php/main.php

The Institute of Molecular and Cell Biology (IMCB) was established in 1987 at the National University of Singapore (NUS) before becoming an autonomous research institute (RI) of A*STAR. Its mission is to develop and foster a vibrant research culture for cutting-edge basic biomedical sciences and for training high-quality Ph.D. students for the flourishing biotechnology and pharmaceutical industries in Singapore. Funded primarily by the Biomedical Research Council (BMRC) of A*STAR, IMCB now boasts about 30 core research labs and 8 core facility units consisting of over 300 research scientists in total. IMCB''s research activities focus on six major fields: Cell Biology, Developmental Biology, Structural Biology, Infectious Diseases, Cancer Biology and Translational Research with core strengths in cell cycling, cell signalling, cell death, cell motility and protein trafficking. IMCB continues to strive for excellence in biomedical R&D to see the vision of Singapore being a world class hub for the Biomedical Sciences in Asia and beyond. IMCB''s achievements include being part of the international consortium that successfully sequenced the entire pufferfish (Fugu rubripes) in 2002. IMCB was awarded the Nikkei Prize 2000 for Technological Innovation in recognition of its growth into a leading international research centre and its collaboration with industry and research institutes worldwide. IMCB continues to publish in renowned international journals, with more than 1300 publications to its credit since 1987.

Proper citation: Institute of Molecular and Cell Biology; Singapore; Singapore (RRID:SCR_012775) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/tRanslatome.html

Detection of differentially expressed genes (DEGs) from the comparison of two biological conditions among different levels of gene expression, using several statistical methods: Rank Product, t-test, SAM, Limma, ANOTA, DESeq, edgeR.

Proper citation: tRanslatome (RRID:SCR_012810) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/p/krona/home/krona/

Software that allows hierarchical data to be explored with zoomable pie charts.

Proper citation: Krona (RRID:SCR_012785) Copy   

•   Source: SciCrunch Registry

http://www.ssa.gov/

Independent agency of the U.S. federal government that administers Social Security, a social insurance program consisting of retirement, disability, and survivor benefits.

Proper citation: U.S. Social Security Administration (RRID:SCR_012905) Copy   

•   Source: SciCrunch Registry

http://www.mmc.edu/

Founded in 1876, Meharry is a non-profit university in Tennessee. Meharry includes a medical school, dental school, and a graduate school.

Proper citation: Meharry Medical College (RRID:SCR_012863) Copy   

•   Source: SciCrunch Registry

https://github.com/bedops/bedops

A suite of tools to address common questions raised in genomic studies - mostly with regard to overlap and proximity relationships between data sets.

Proper citation: BEDOPS (RRID:SCR_012865) Copy   

•   Source: SciCrunch Registry

http://www2.hu-berlin.de/eyetracking-eeg

A plugin for the open-source MATLAB toolbox EEGLAB developed with the goal to facilitate integrated analyses of electrophysiological and oculomotor data. The plugin parses, imports, and synchronizes simultaneously recorded eye tracking data and adds it as extra channels to the EEG. Saccades and fixations can be imported from the eye tracking raw data or detected with an adaptive velocity-based algorithm. Eye movements are then added as new time-locking events to EEGLAB's event structure, allowing easy saccade- and fixation-related EEG analysis (e.g., fixation-related potentials, FRPs). Alternatively, EEG data can be aligned to stimulus onsets and analyzed according to oculomotor behavior (e.g. pupil size, microsaccades) in a given trial. Saccade-related ICA components can be objectively identified based on their covariance with the electrically independent eye tracker. All functions can be accessed via EEGLAB's GUI or called from the command line.

Proper citation: EYE-EEG (combined eye-tracking & EEG) (RRID:SCR_012903) Copy   

•   Source: SciCrunch Registry

http://genome.dkfz-heidelberg.de/cgi-bin/GENSCAN/genscan.cgi

Resource out of service. Documented on February 24,2021.

Proper citation: GENSCAN (RRID:SCR_012902) Copy   

•   Source: SciCrunch Registry

http://gmod.org/wiki/Flash_GViewer

Flash GViewer is a customizable Flash movie that can be easily inserted into a web page to display each chromosome in a genome along with the locations of individual features on the chromosomes. It is intended to provide an overview of the genomic locations of a specific set of features - eg. genes and QTLs associated with a specific phenotype, etc. rather than as a way to view all features on the genome. The features can hyperlink out to a detail page to enable to GViewer to be used as a navigation tool. In addition the bands on the chromosomes can link to defineable URL and new region selection sliders can be used to select a specific chromosome region and then link out to a genome browser for higher resolution information. Genome maps for Rat, Mouse, Human and C. elegans are provided but other genome maps can be easily created. Annotation data can be provided as static text files or produced as XML via server scripts. This tool is not GO-specific, but was built for the purpose of viewing GO annotation data. Platform: Online tool

Proper citation: Flash Gviewer (RRID:SCR_012870) Copy   

•   Source: SciCrunch Registry