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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BASTA Resource Report Resource Website 1+ mentions |
BASTA (RRID:SCR_017303) | data processing software, software resource, software toolkit, software application | Software package as Bayesian method to infer migration from genetic data. Implemented in BEAST2 that combines accuracy of methods based on structured coalescent with computational efficiency required to handle more than few populations. | Bayesian method, infer, migration, genetic, data, structured, coalescent, approximation, population | is related to: BEAST2 | DOI:10.1371/journal.pgen.1005421 | Free, Available for download, Freely available | SCR_017303 | BAyesian STructured coalescent Approximation, BASTA, BEAST2 | 2026-02-13 10:58:01 | 1 | ||||||||
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DepressionTools.org Clinical Significance Calculator Resource Report Resource Website |
DepressionTools.org Clinical Significance Calculator (RRID:SCR_003873) | DepressionTools.org | data analysis service, production service resource, service resource, analysis service resource | Online instrument that estimates whether a biomarker predicting outcome of depression treatment is likely to be clinically significant. | biomarker, clinical significance, treatment, clinical, outcome, software as a service, binary, genetic, continuous, effect size |
uses: Hamilton Rating Scale for Depression has parent organization: NEWMEDS |
Depressive Disorder | PMID:22256872 | nlx_158198 | SCR_003873 | Clinical Significance Calculator | 2026-02-13 10:55:19 | 0 | ||||||
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GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool Resource Report Resource Website 100+ mentions |
GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool (RRID:SCR_006848) | GOrilla | data analysis service, production service resource, service resource, analysis service resource | A tool for identifying and visualizing enriched GO terms in ranked lists of genes. It can be run in one of two modes: * Searching for enriched GO terms that appear densely at the top of a ranked list of genes or * Searching for enriched GO terms in a target list of genes compared to a background list of genes. | gene, genetic, ontology, ontology or annotation visualization, statistical analysis, term enrichment, visualization, analysis, protein |
is listed by: Gene Ontology Tools is listed by: OMICtools is related to: Gene Ontology |
European Union FP6 ; Yeshaya Horowitz Association |
PMID:19192299 | Acknowledgement requested, Free, Public | nlx_80425, OMICS_02282 | SCR_006848 | Gene Ontology enRIchment anaLysis and visuaLizAtion tool, GOrilla: Gene Ontology Enrichment Analysis Visualization Tool | 2026-02-13 10:55:56 | 492 | |||||
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FaceBase Biorepository Resource Report Resource Website 1+ mentions |
FaceBase Biorepository (RRID:SCR_006001) | FaceBase Biorepository | biomaterial supply resource, tissue bank, material resource | THIS RESOURCE IS NO LONGER IN SERVICE,documented on January,18, 2022. FaceBase Biorepository is now collecting biological samples from people with cleft lip/palate and their family members. Information for Prospective Cases: Clefts of the lip and/or palate can be caused by a wide range of genetic, environmental and other factors. The FaceBase Biorepository will serve as a common source of both biological samples and information that can be made available to investigators trying to determine the underlying cause of these common birth defects. Genetic studies, in particular, will benefit from both family history information and having samples from affected individuals as well as their family members. DNA is the information containing molecules found in all the cells of our body and can be easily obtained from material such as blood or saliva samples. As part of the FaceBase Biorepository, we are requesting families to submit biological samples from specific family members as well as information from other family members that might be affected with either the same condition or a similar condition. The medical and family history information that is collected includes other relevant information such as exposure to possible environmental causes during pregnancy. The biorepository is managed by Nichole Nidey, a research study coordinator, and Jeff Murray, a pediatric clinical geneticist and researcher. They are available to speak with family members regarding questions they may have, including providing information about the biorepository and making arrangements for the collection of samples for those who wish to participate. All participation is voluntary. Your name or other personally identifiable information (name, address, etc) will be removed before information is placed in the biorepository. Summary data to show how the database itself has been used overall as well as updates on whether specific findings might have been made using this database will be available on the FaceBase website at www.facebase.org. A newsletter containing this information will also be given to families and referring clinicians so that they may discuss the specifics with the families if there appears to be information that might be relevant in a particular case. Families will also need to sign a consent form that has been approved by the Institutional Review Board at the University of Iowa. Also, any submitted samples or data can also be removed from the database at any time should the family no longer wish to participate. Investigators interested in requesting DNA samples or for more information, please contact cleftresearch (at) uiowa.edu, Nichole Nidey, nichole-nidey (at) uiowa.edu or (319) 353-4365, or Jeff Murray, jeff-murray (at) uiowa.edu. | birth defect, genetic, environment, gene |
is listed by: One Mind Biospecimen Bank Listing has parent organization: FaceBase |
Cleft lip, Cleft palate, Family member, Campomelic Dysplasia, Chromosome Abnormality, Congenital Heart Disease, Facial clefting-Tessier Type 4, Gordon Syndrome, Hemifacial Microsomia, Idiopathic Short Stature, Marshall/Stickler, Microtia, Multiple Congenital Anomaly, Neurofibromatosis, Pierre Robin, Popliteal Pterygium Syndrome, Robinow, Downs syndrome, Townes-Brock Syndrome, Van der Woude Syndrome, Popliteal Pterygium Syndrome, Wildervanck Syndrome | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151379 | SCR_006001 | 2026-02-13 10:55:44 | 1 | |||||||
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Genotype-IBD Sharing Test Resource Report Resource Website 100+ mentions |
Genotype-IBD Sharing Test (RRID:SCR_006257) | GIST | software resource, software application, resource | Software package to test if a marker can account in part for the linkage signal in its region. There are two versions of the software: Windows and Linux/Unix. | identical by descent, genotype, gene, genetic, genomic, unix, ms-windows, linux, linkage disequilibrium, linkage, association |
is listed by: Genetic Analysis Software has parent organization: Vanderbilt University; Tennessee; USA |
Vanderbilt Diabetes Center ; NHGRI HG00376; NIDDK DK62370; NHGRI N01-HG-15465 |
PMID:14872409 | nlx_154133 | http://phg.mc.vanderbilt.edu/content/gist | SCR_006257 | 2026-02-13 10:55:48 | 120 | ||||||
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LDGROUP Resource Report Resource Website |
LDGROUP (RRID:SCR_006282) | software resource, software application | Software application for inkage disequilibrium grouping of single nucleotide polymorphisms (SNPs) reflecting haplotype phylogeny for efficient selection of tag SNPs. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154422, SCR_009368, nlx_154590 | http://www.fumihiko.takeuchi.name/publications.html | SCR_006282 | R/LDGROUP | 2026-02-13 10:55:47 | 0 | ||||||||
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Office of Research on Womens Health: Reseach Resource Report Resource Website |
Office of Research on Womens Health: Reseach (RRID:SCR_001822) | data or information resource, organization portal, portal | The mission of the Office of Research on Women's Health (ORWH) is to stimulate and encourage meritorious research on women's health, including the role of sex and gender in health and disease. The priorities signify approaches and areas for which there is a need to stimulate and encourage research on women's health, or sex/gender factors, and the advancement of women in biomedical research careers. These research priorities are not an exclusive list of research areas important to women's health; therefore other innovative or significant research areas should also be considered. The following four overarching themes are important for addressing research on women's health: Lifespan, Sex/Gender Determinants, Health Disparities/Differences and Diversity, ad Interdisciplinary Research. Special Areas of Emphasis - Prevention/Treatment: from basic biological factors, including identifying and validating biomarkers, to risk and its applications to disease prevention, early detection, and treatment. - Sex and Genetics/Pharmacogenomics: genetic, molecular, and cellular basis for action of pharmacologic agents known to have different effects in females than in males. Research on effects of sex as a modifier of gene function and response is under-investigated. Sponsors: This research is funded by the NAtional Institutes of Health. | function, gender, gene, genetic, biological, biomarker, biomedical, cellular, determinant, disease, disparity, diversity, heath, molecular, pharmacogenomics, prevention, sex, treatment, woman | Free | nif-0000-10387 | http://orwh.od.nih.gov/research.html | SCR_001822 | ORWH Research | 2026-02-13 10:54:56 | 0 | ||||||||
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HAPAR Resource Report Resource Website |
HAPAR (RRID:SCR_009218) | HAPAR | software resource, software application | Software application to infer haplotype from genotype data. It uses the parsimony principle, i.e. try to find the minimum number of haplotypes that can reconstruct the input genotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window, unix, solaris | is listed by: Genetic Analysis Software | nlx_154373 | SCR_009218 | HAplotype inference by PARsimony | 2026-02-13 10:56:21 | 0 | ||||||||
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HAP 2 Resource Report Resource Website |
HAP 2 (RRID:SCR_009217) | HAP 2 | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, unix, solaris, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154372 | SCR_009217 | HAPlotype analysis of polymorphic markers | 2026-02-13 10:56:21 | 0 | |||||||
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GTOOL Resource Report Resource Website 10+ mentions |
GTOOL (RRID:SCR_009215) | GTOOL | software resource, software application | Software application for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154368 | SCR_009215 | 2026-02-13 10:56:21 | 42 | |||||||||
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GMCHECK Resource Report Resource Website |
GMCHECK (RRID:SCR_009213) | GMCHECK | software resource, software application | Software application that finds the posterior probabilities for data errors for genotypes and phenotypes in pedigree data (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154362 | http://episun7.med.utah.edu/~alun/gmcheck/ | SCR_009213 | 2026-02-13 10:56:21 | 0 | ||||||||
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GLIDERS Resource Report Resource Website 1+ mentions |
GLIDERS (RRID:SCR_009210) | GLIDERS | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154359 | SCR_009210 | Genome-wide LInkage DisEquilibrium Repository and Search engine | 2026-02-13 10:56:21 | 1 | |||||||
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MLD Resource Report Resource Website |
MLD (RRID:SCR_009298) | MLD | software resource, software application | Software application performing a shuffling version of the exact conditional tests for different combinations of allelic and genotypic disequilibrium on haploid and diploid data, or their combination. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, ms-windows, (95) | is listed by: Genetic Analysis Software | nlx_154489 | SCR_009298 | 2026-02-13 10:56:22 | 0 | |||||||||
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MLBGH Resource Report Resource Website 1+ mentions |
MLBGH (RRID:SCR_009297) | MLBGH | software resource, software application | Software application that is an extension of the GENEHUNTER program to perform sib-pair and sib-ship linkage analysis using the Maximum Likelihood Binomial (MLB) method. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154488 | SCR_009297 | Maximum-Likelihood-Binomial analysis of affected sib-pair and sibship data extended from the GENEHUNTER program | 2026-02-13 10:56:22 | 1 | ||||||||
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MITPENE Resource Report Resource Website |
MITPENE (RRID:SCR_009294) | MITPENE | software resource, software application | Software program for analysis of mitochondrial diseases (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154485 | SCR_009294 | 2026-02-13 10:56:22 | 0 | |||||||||
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MKGST Resource Report Resource Website 1+ mentions |
MKGST (RRID:SCR_009295) | MKGST | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154486 | SCR_009295 | including ASP (power calculator for gene mapping using a sibpair design), with given infants or parent-infant duos), child and putative father), MUTPROF/MUTCOMP (comparison of mutation profiles), Michael Krawczak''s Genetics Software Tools, typed at single locus DNA markers, PATERN (calculation of paternity probabilities from the multilocus DNA profiles of trios, comparing specific types of simple hypotheses regarding the familial relationships involved), ASPSHARE (rapid calculation of the expected ibd sharing at the trait locus, FINDSIRE (identify mothers or sires by means of the comparison of a large number of potential parents, EASYPAT (calculation of likelihood ratios for single locus data, comprising mother, based upon the model) | 2026-02-13 10:56:22 | 2 | ||||||||
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MINIMAC Resource Report Resource Website 100+ mentions |
MINIMAC (RRID:SCR_009292) | MINIMAC | software resource, software application | Software application that is a low memory, computationally efficient implementation of the MaCH algorithm for genotype imputation. It is designed to work on phased genotypes and can handle very large reference panels with hundreds or thousands of haplotypes. The name has two parts. The first, mini, refers to the modest amount of computational resources it requires. The second, mac, is short hand for MaCH, our widely used algorithm for genotype imputation. (entry from Genetic Analysis Software) | gene, genetic, genomic |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools is related to: Michigan Imputation Server |
DOI:10.1038/ng.3656 | nlx_154483, OMICS_08953 | https://sources.debian.org/src/minimac4/ | SCR_009292 | MACH | 2026-02-13 10:56:22 | 187 | ||||||
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MFLINK Resource Report Resource Website |
MFLINK (RRID:SCR_009290) | MFLINK | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154477 | SCR_009290 | (nearly) model-free linkage analysis | 2026-02-13 10:56:22 | 0 | |||||||
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GEVALT Resource Report Resource Website 1+ mentions |
GEVALT (RRID:SCR_009207) | GEVALT | software resource, software application | Software application designed to simplify and expedite the process of genotype analysis and disease association tests by providing a common interface to several common tasks relating to such analyses. It is aimed for analysis of unrelated individuals as well as two-generation families. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154354 | SCR_009207 | GEnotype Visualization and ALgorithmic Tool | 2026-02-13 10:56:21 | 6 | ||||||||
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GGT Resource Report Resource Website 1+ mentions |
GGT (RRID:SCR_009208) | GGT | software resource, software application | Software application that combines genetic map data and locus data to display Graphical Genotypes. Data can be viewed by individual or by linkage group, and sorted on markers. Statistics are calculated and simultaneous filtering/selection on multiple linkage groups is possible. Output of hi-res genotype drawings directly to printer or to emf/jpeg/bitmap image. A module for constructing GGT-datafiles from common mapmaker/joinmap style formatted data is available. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, (pascal), ms-windows, (95/98/2000/xp) | is listed by: Genetic Analysis Software | nlx_154356 | http://www.dpw.wau.nl/pv/PUB/ggt/ | SCR_009208 | Graphical GenoTyping package MAPCOMP | 2026-02-13 10:56:21 | 1 |
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