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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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RPPA Core Facility Resource Report Resource Website 10+ mentions |
RPPA Core Facility (RRID:SCR_016649) | RPPA | core facility, access service resource, service resource | Core provides technology for functional proteomics studies and centralized, standardized and quality controlled services locally and globally. | technology, functional, proteomics, studies, centralized, standardized, quality, controlled, service | has parent organization: University of Texas MD Anderson Cancer Center | NCI CA16672 | Commercially available, Registration required | SCR_016649 | MD Anderson RPPA Core, RPPA, Reverse Phase Protein Array Core, Reverse Phase Protein Array (RPPA) Core | 2026-02-14 02:08:39 | 34 | |||||||
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University of Texas MD Anderson Cancer Center Proteomics Core Facility Resource Report Resource Website |
University of Texas MD Anderson Cancer Center Proteomics Core Facility (RRID:SCR_017731) | core facility, access service resource, service resource | Facility provides mass spectrometry analysis of proteins. Provides access to mass spectrometry based proteomics technologies and services including Protein Identification, Molecular Weight Determination, Quantitative Protein Analysis, Post-translational Modification Analysis, LC or LC-MS Analysis, Equipment Usage, Additional Data Analysis:Bioinformatics, statistics, pathway analysis and Assistance preparing materials for manuscripts or grants.Consultations for custom assays for other MS Services are also available. | Mass, spectrometry, analysis, protein, proteomics, service | NCI P30 CA016672; NIH Office of the Director S10 OD012304 |
Open | ABRF_186 | SCR_017731 | Proteomics Facility | 2026-02-14 02:08:09 | 0 | ||||||||
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Chicago University Cytometry and Antibody Technology Core Facility Resource Report Resource Website 50+ mentions |
Chicago University Cytometry and Antibody Technology Core Facility (RRID:SCR_017760) | CAT Facility | core facility, access service resource, service resource | Core offers services in cytometry and antibody technology, helps to design projects, data acquisition, analysis and/or interpretation beyond routine practices,critical drafting and/or revision of manuscript for intellectual content purposes. | Cytometry, antibody, technology, project, design, data, acquisition, analysis, service, core | NCI P30 CA014599 | Open | ABRF_293 | SCR_017760 | Cytometry and Antibody Technology Core Facility | 2026-02-14 02:08:41 | 64 | |||||||
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North Carolina University at Chapel Hill School of Medicine High Throughput Peptide Synthesis and Array Core Facility Resource Report Resource Website 1+ mentions |
North Carolina University at Chapel Hill School of Medicine High Throughput Peptide Synthesis and Array Core Facility (RRID:SCR_017837) | core facility, access service resource, service resource | Core offers services for: High quality synthetic peptides, stable isotope labeled peptides, peptides with PTM and fluorescent and affinity tags, synthesis of peptide libraries. Analysis of synthetic peptides. Purification, lyophilization and aliquoting of synthetic peptides. | Synthetic, peptide, stable, isotope, labeled, library, analysis, purification, lyophilization, aliquoting, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086 | Open | ABRF_626 | SCR_017837 | UNC High-Throughput Peptide Synthesis and Array Facility | 2026-02-14 02:08:12 | 6 | |||||||
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North Carolina University at Chapel Hill School of Medicine Macromolecular X-Ray Crystallography Core Facility Resource Report Resource Website |
North Carolina University at Chapel Hill School of Medicine Macromolecular X-Ray Crystallography Core Facility (RRID:SCR_017839) | MX Facility | core facility, access service resource, service resource | Core provides support and infrastructure necessary to initiate and successfully complete structural biology or structural chemistry project. Offers services in Crystallization,X-Ray DiffractionData Collection,Structure Determination and Refinement. | Structural, biology, chemistry, X-ray, crystallography, diffraction, data, collection, refinement, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086 | Open | ABRF_629 | SCR_017839 | Macromolecular X-Ray Crystallography | 2026-02-14 02:08:05 | 0 | ||||||
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University of North Carolina at Chapel Hill Microscopy Services Laboratory Core Facility Resource Report Resource Website 1+ mentions |
University of North Carolina at Chapel Hill Microscopy Services Laboratory Core Facility (RRID:SCR_017913) | MSL | core facility, access service resource, service resource | Core provides training, assistance and services in light microscopy, electron microscopy and image analysis. UNC core facility that is part of Department of Pathology and Laboratory Medicine, and are light microscopy core for Lineberger Comprehensive Cancer Center. | Light, microscopy, electron, image, analysis, instrument, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086; North Carolina Biotech Center Institutional Support Grant |
Open | ABRF_790 | SCR_017913 | Microscopy Services Laboratory | 2026-02-14 02:08:35 | 2 | ||||||
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CytoTRACE Resource Report Resource Website 100+ mentions |
CytoTRACE (RRID:SCR_022828) | software resource, simulation software, software application | Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data. | differentiation state of cells, single cell RNA sequencing data, predicting differentiation states, scRNA-seq data | NCI R00CA187192; NCI R01CA100225; Stinehart Reed foundation ; Stanford Bio-X Interdisciplinary Initiatives Seed Grants Program ; Virginia and D.K. Ludwig Fund for Cancer Research ; U.S. Department of Defense ; National Science Foundation Graduate Research Fellowship ; Stanford Bio-X Bowes Graduate Student Fellowship ; Stanford Medical Science Training Program |
PMID:31974247 | Free, Freely available | SCR_022828 | Cellular (Cyto) Trajectory Reconstruction Analysis using gene Counts and Expression | 2026-02-14 02:04:59 | 132 | ||||||||
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SvABA Resource Report Resource Website 10+ mentions |
SvABA (RRID:SCR_022998) | sequence analysis software, data processing software, data analysis software, software application, software resource | Software tool for detecting structural variants in sequencing data using genome wide local assembly. Genome wide detection of structural variants and indels by local assembly. Used for detecting SVs from short read sequencing data using genome wide local assembly with low memory and computing requirements. | genome wide detection, structural variants, indels, local assembly | NHGRI T32 HG002295; NCI U54CA143798; NCI R01CA188228; DFCI-Novartis Drug Discovery Program ; Voices Against Brain Cancer ; Pediatric Low-Grade Astrocytoma Foundation ; Broad Institute ; Wellcome Fund Career Award for Medical Scientists |
PMID:29535149 | Free, Available for download, Freely available | SCR_022998 | 2026-02-14 02:05:05 | 14 | |||||||||
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CRISPOR Resource Report Resource Website 1000+ mentions |
CRISPOR (RRID:SCR_015935) | software resource, web application | Web application that helps design, evaluate and clone guide sequences for the CRISPR/Cas9 system. This sgRNA design tool assists with guide selection in a variety of genomes and pre-calculated results for all human coding exons as a UCSC Genome Browser track. | rna, sg, sgrna, crispr, genome, off-target, prediction, accuracy, clone, cas9, coding, exon | is related to: UCSC Genome Browser | MRC 53658; NIH Office of the Director U42 OD011174; NHGRI U41 HG002371; NCI U54 HG007990; California Institute of Regenerative Medicine GC1R-06673C; Agence Nationale pour la Recherche ; Fondation pour la Recherche Médicale DEQ20140329544 |
PMID:27380939 | Free, Available for download | https://github.com/maximilianh/crisporWebsite | SCR_015935 | 2026-02-14 02:04:53 | 1320 | |||||||
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HetMatPy Resource Report Resource Website 1+ mentions |
HetMatPy (RRID:SCR_023409) | network analysis software, data processing software, data analysis software, software application, software resource | Software Python package for matrix storage and operations on hetnets. Enables identifying relevant network connections between set of query nodes. | Hetionet, matrix storage, operations on hetnets, hetnets, heterogeneous networks, | Gordon and Betty Moore Foundation ; NHGRI R01 HG010067; NCI R01 CA237170 |
PMID:36711546 | Free, Available for download, Freely available | SCR_023409 | hetmatpy | 2026-02-14 02:05:06 | 1 | ||||||||
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X2K Web Resource Report Resource Website 10+ mentions |
X2K Web (RRID:SCR_023624) | X2K | data access protocol, software resource, web service | Web service to predict involvement of upstream cell signaling pathways, given signature of differentially expressed genes. Used to linking expression signatures to upstream cell signaling networks. | predicts involvement of upstream cell signaling pathways, differentially expressed genes, linking expression signatures, upstream cell signaling networks, | has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA | NHLBI U54 HL127624; NCI U24 CA224260; NIH Office of the Director OT3 OD025467 |
PMID:29800326 | Free, Freely available | https://github.com/MaayanLab/x2k_web | SCR_023624 | eXpression2Kinases (X2K) Web | 2026-02-14 02:04:58 | 10 | |||||
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UCSC Cancer Genomics Browser Resource Report Resource Website 500+ mentions |
UCSC Cancer Genomics Browser (RRID:SCR_011796) | Cancer Genomics Browser | data or information resource, service resource, database | A suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. It is possible to display your own clinical data within one of their datasets. | genome, genomics, clinical, next-generation sequencing, chromosome, gene, FASEB list |
is listed by: OMICtools has parent organization: University of California at Santa Cruz; California; USA |
Cancer | NCI ; NHGRI ; American Association for Cancer Research ; UCSF Comprehensive Cancer Center ; California Institute for Quantitative Biosciences |
PMID:23109555 PMID:21059681 PMID:19333237 |
Acknowledgement requested | OMICS_00925 | SCR_011796 | 2026-02-14 02:06:20 | 530 | |||||
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Cancer Methylome System Resource Report Resource Website 1+ mentions |
Cancer Methylome System (RRID:SCR_012013) | CMS | data or information resource, database | Datbase and web-based system for visualization and analysis of genome-wide methylation data of human cancers. | gene, methylation, visualization |
is listed by: OMICtools has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA |
Cancer, Normal | NCI | PMID:22035855 | Acknowledgement requested | OMICS_01836 | SCR_012013 | 2026-02-14 02:06:21 | 8 | |||||
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CRAVAT Resource Report Resource Website 10+ mentions |
CRAVAT (RRID:SCR_012776) | CRAVAT | data analysis service, production service resource, service resource, analysis service resource | A web-based application designed with an easy-to-use interface to facilitate the high-throughput assessment and prioritization of genes and missense alterations important for cancer tumorigenesis. |
is listed by: OMICtools has parent organization: Johns Hopkins University; Maryland; USA |
Cancer | NCI CA 152432; NSF DBI 0845275; NCI 1U01CA180956-01 |
OMICS_00147 | SCR_012776 | cancer-related analysis of variants toolkit | 2026-02-14 02:06:47 | 26 | |||||||
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Grid-Enabled Measures Database Resource Report Resource Website 1+ mentions |
Grid-Enabled Measures Database (RRID:SCR_016043) | GEM | data or information resource, database | Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data. | behavior, social, data, research, data sharing, exchange | NCI Y01 C16006001 | PMID:21521586 | Freely available | SCR_016043 | GEM Database | 2026-02-14 02:06:53 | 1 | |||||||
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Research-tested Intervention Programs (RTIPs) Resource Report Resource Website 10+ mentions |
Research-tested Intervention Programs (RTIPs) (RRID:SCR_016042) | RTIPs | data or information resource, database | Database of cancer control interventions and program materials. It is designed to provide program planners and public health practitioners easy and immediate access to research-tested materials. | cancer, control, intervention, prevention, diagnosis, planning, research, program, public, health, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian |
cancer | NCI | Freely available, Public | biotools:rtips | https://bio.tools/rtips | SCR_016042 | Research-tested Intervention Programs | 2026-02-14 02:06:30 | 25 | ||||
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ClinGen Resource Report Resource Website 500+ mentions |
ClinGen (RRID:SCR_014968) | CGR | data or information resource, database | Genomics knowledgebase for clinical relevance of genes and variants for use in research. ClinGen's primary function is to store and share information for the benefit of the scientific community. Laboratory scientists, clinicians, and patients can share and access data. | database, knowledgebase, genomics, healthcare, clinical, FASEB list | Eunice Kennedy Schriver NICHD ; NHGRI U41 HG006834-01A1; NHGRI U01 HG007437-01; NHGRI U01 HG007436-01; NCI HHSN261200800001E; NCI contract HHSN261200800001E |
PMID:26014595 | Free, Available to the scientific community | SCR_014968 | Clinical Genome Resource (ClinGen), Clinical Genome Resource | 2026-02-14 02:06:22 | 898 | |||||||
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Pancreatlas Resource Report Resource Website 10+ mentions |
Pancreatlas (RRID:SCR_018567) | data or information resource, atlas | Collection of human pancreas data and images. Platform to share data from human pancreas samples. Houses reference datasets from human pancreas samples, achieved through generosity of organ donors and their families. | Human pancreas data, pancreas image, reference dataset, human pancreas sample, organ donor pancreas data |
lists: Exeter Archival Diabetes Biobank (EADB) is related to: Vanderbilt University; Tennessee; USA is related to: Human Islet Research Network (HIRN) works with: Exeter Archival Diabetes Biobank (EADB) |
Type 1 diabetes, Diabetes, Type 2 diabetes, Cystic Fibrosis-Related Diabetes | Leona M. and Harry B. Helmsley Charitable Trust ; NIDDK DK104211; NIDDK DK108120; NIDDK DK112232; NIDDK DK106755; NIDDK DK20593; NCI CA68485; NIDDK DK58404; NIDDK DK59637; NEI EY08126 |
Free, Freely available | SCR_018567 | 2026-02-14 02:06:25 | 10 | ||||||||
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Robot Reviewer Resource Report Resource Website 1+ mentions |
Robot Reviewer (RRID:SCR_018961) | software resource, text extraction software, software application | Software tool as machine learning system that automatically assesses bias in clinical trials. From PDF formatted trial report determines risks of bias for domains defined by Cochrane Risk of Bias (RoB) tool, and extracts supporting text for these judgments. | Automated review, data mining, manuscript screening, artificial intelligence, automatic evidence synthesis, evidence synthesis, trial conduct information, data trial, bias, bias assessement | NLM R01 LM012086; NCI UH2 CA203711; UK Medical Research Council |
PMID:26104742 | Free, Freely available | SCR_018961 | 2026-02-14 02:06:25 | 5 | |||||||||
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Adenoma Polyp Tissue Bank Resource Report Resource Website |
Adenoma Polyp Tissue Bank (RRID:SCR_005366) | APTB | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. The Adenoma Polyp Tissue Bank (APTB) receives whole blood from patients enrolled in the Prevention of Sporadic Colorectal Adenomas with Celecoxib clinical trial. We have reached our accrual on blood submissions, so we will no longer be receiving blood specimens The objectives of this trial are as follows: A. To determine the efficacy and safety of celecoxib versus placebo in preventing the occurrence of newly detected colorectal adenomas in subjects at increased risk for colorectal carcinoma. In addition to incidence, other established risk factors will be evaluated for their association with occurrence of new colorectal adenomas, including cancer family history and adenoma size, histopathologic grade, multiplicity and location. Primary assessment of treatment efficacy will be the reduction in the number of subjects with adenomas at colonoscopy after Year 1 and Year 3 of study drug use. Secondary assessments of treatment efficacy will be 1) the number of adenomas 2) the histopathologic grade of adenomas and 3) the size of adenomas, also measured after one year and three years of study drug use. These factors will be incorporated into a risk model for predicting adenoma occurrence and response to celecoxib. B. To determine the efficacy of celecoxib versus placebo in modulating one or more of a panel of biomarkers for colorectal cancer at the cellular and molecular level sampled in a subset of subjects at selective sites at baseline and after Year 1 and Year 3 of study drug use. These biomarkers will include measurements of aberrant crypt foci (ACF), proliferation (index and crypt distribution), apoptosis (index and crypt distribution), COX expression and activity. If modulation of one or more mucosal biomarkers occur, we will explore whether it correlates with the development of incident colorectal neoplasia (adenomas/carcinomas), thereby attempting to validate the surrogacy of that biomarker. C. To develop a specimen bank. Serum and white blood cells are isolated from whole blood and adenoma tissue blocks and slides are banked. Banked specimens will become available for use in correlative science studies at a later point. This project began in 1999 and will be extended through 2006. The lead principal investigator is Monica M. Bertagnolli, MD, Brigham and Women''s Hospital, Boston, MA, and the APTB Director is Scott Jewell, Ph.D., Department of Pathology, The Ohio State University. The APTB is supported by the NIH, NCI Division of Cancer Prevention, in connection with the Strang Cancer Prevention Center, Cornell University, New York., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | blood, serum, white blood cell, adenoma tissue, tissue, whole blood, block, slide, colorectal adenoma, celecoxib, adenoma, cancer, colorectal cancer, clinical trial, polyp, risk factor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Human Tissue Resource Network has parent organization: Human Tissue Resource Network |
Increased risk for colorectal carcinoma | NCI | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144435 | SCR_005366 | APTB Specimen Bank | 2026-02-14 02:06:49 | 0 |
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