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https://edspace.american.edu/openbehavior/project/cap-touch-sensor/

Project related to accurately counting and monitoring the behavior of organisms.Provides open source capacitive touch sensing system.Capacitive sensors are positioned to readily detect direct physical touches from rodent under investigation. Device,designed around capacitive touch sensor MPR121,accurately counts and monitors behavior of organisms.

Proper citation: Capactive Touch Sensor project (RRID:SCR_021486) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/2abt/

Project related to training mice on task that requires continued updating of action/outcome relationships. Behavioral project includes task protocol and corresponding build instructions.Open source behavioral box used to train mice on task that requires continued updating of action/outcome relationships. Permits investigation of motivated behavior that requires flexible relationships between sensory stimuli and motor action. Project provided by Harvard Medical School scientists.

Proper citation: Two Armed Bandit Task project (RRID:SCR_021483) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/finchscope/

Project related to fluorescent imaging. Provides single photon fluorescent imaging microscope systems. System includes modular in vivo all optical neurophysiology rigs with transparent hardware, and acquisition and analysis software.Provide designs for 3D printed, lightweight, wireless capable microscope and motorized commutator, designed for multi month monitoring neural activity of zebra finches while they sing their courtship songs. Adapted for rodents and birds such as canaries.

Proper citation: FinchScope project (RRID:SCR_021484) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ucla-miniscope/

Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice.

Proper citation: UCLA Miniscope project (RRID:SCR_021480) Copy   

•   Source: SciCrunch Registry

https://github.com/cMadan/stl-toolbox

Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data.

Proper citation: Quantifying Animal Movement from Pre-recorded Videos (RRID:SCR_021515) Copy   

•   Source: SciCrunch Registry

https://github.com/ikodvanj/ratPASTA/

Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.

Proper citation: Platform for Acoustic STArtle (RRID:SCR_021516) Copy   

•   Source: SciCrunch Registry

https://github.com/MouseLand/facemap

Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior.

Proper citation: FaceMap (RRID:SCR_021513) Copy   

•   Source: SciCrunch Registry

https://github.com/kscottz/SkinnerBox

Software tool for data logging and analysis.

Proper citation: Skinner Box (RRID:SCR_021514) Copy   

•   Source: SciCrunch Registry

https://github.com/bonsai-rx/bonsai

Software tool as event based framework for processing and controlling data streams. Open source software tool as visual language for reactive programming.Used for composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards.

Proper citation: Bonsai (RRID:SCR_021512) Copy   

•   Source: SciCrunch Registry

https://github.com/cortex-lab/Rigbox

Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data.

Proper citation: Rigbox (RRID:SCR_021517) Copy   

•   Source: SciCrunch Registry

https://github.com/mne-tools/mne-cpp

Software tool for real time processing of electrophysiological data.

Proper citation: MNE Scan (RRID:SCR_021530) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ardbark/

Project related to fear conditioning studies.Includes hardware and software tools. Provides Arduino based device for producing naturalistic stimuli which can be integrated with existing commercial operant chambers with few modifications.. Stores custom made .wav files on SD card, interfaces with Med System and plays the .wav files through ceiling mounted speakers.

Proper citation: Ardbark project (RRID:SCR_021494) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/novel-gustometer/

Project related to taste sensory system research in humans on behavioral, electrophysiological and hemodynamic activity levels.Provided system includes hardware and software tools.

Proper citation: Novel Gustometer for Human Taste Research project (RRID:SCR_021495) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/hasra/

Project includes system for individualized training of group housed mice in single pellet reaching task.System allows user to host up to 5 mice in their home environment and automatically administer single pellet reaching test to those animals.Platform for training and assessing skilled reaching in mice with minimal need for experimenter handling.

Proper citation: Home Cage Automated Skilled Reaching Apparatus project (RRID:SCR_021492) Copy   

•   Source: SciCrunch Registry

https://github.com/yorambenshaul/optimouse

Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.

Proper citation: Optimouse (RRID:SCR_021527) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/diynamic/

Project is related to measurement of complex phenotypes in homecage. Homecage automated open source behavioral testing sytem to enable high throughput 24h testing of many standard operant paradigms. Using Arduino platform and easily sourced inexpensive components system can display light cues and dispense liquid rewards and has nosepoke receptacles with infrared detectors for operant responses, within homecage.Method provided by Dartmouth College scientists.

Proper citation: DIY-NAMIC project (RRID:SCR_021489) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/captouch/

Project related to study learning and memory in preclinical research.Included tracking system for object recognition tasks provides standardization across experiments and labs.Automates scoring process using capacitive sensors, while providing validated 3D-printed objects in order to standardize object recognition to study learning and memory in preclinical research.Used for accurate measurement of interaction time during object recognition tasks.

Proper citation: CapTouch project (RRID:SCR_021488) Copy   

•   Source: SciCrunch Registry

https://www.eneuro.org/content/10/5/ENEURO.0127-22.2023

Open source, adaptable tracking system for multiple rodents. Scalable and customizable system for tracking and behavior assessment consists of Raspberry Pi based video and RFID acquisition. Maximum of six rodents of any coat color can be tracked simultaneously in any user defined arena with few restrictions. For pose estimation and travel trajectory analysis, PyMouseTracks supports interfacing with open source packages such as DeepLabCut and Traja.

Proper citation: PyMouseTracks (RRID:SCR_024453) Copy   

•   Source: SciCrunch Registry

https://github.com/EwellNeuroLab?tab=repositories

Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings.

Proper citation: LFP Monitoring (RRID:SCR_024428) Copy   

•   Source: SciCrunch Registry

https://github.com/bkntr/brainways

Open source software that automatically registers coronal slices and quantifies fluorescent markers. Python based, AI registration algorithm for slice matching to the Waxholm rat atlas. Slice quantification can be trained on any atlas, which allows use for other subjects such as mice, zebrafish, and humans. AI-based software for registration and analysis of fluorescent markers on coronal brain slices.

Proper citation: Brainways (RRID:SCR_024402) Copy   

•   Source: SciCrunch Registry