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https://code.google.com/p/glycanbuilder/

An intuitive and flexible software tool for building and displaying glycan structures.

Proper citation: GlycanBuilder (RRID:SCR_012123) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/glycresoft/

A software package for automated recognition of glycans from LC/MS data.

Proper citation: GlycReSoft (RRID:SCR_012122) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/isdtool/files/ISDTool-2.0/

Software that implements a computational model for predicting immunosuppressive domains (ISDs). The software could be used to identify typical ISDs in retroviruses including HERV, HTLV, HIV, STLV, SIV and MLV.

Proper citation: ISDTool (RRID:SCR_012125) Copy   

•   Source: SciCrunch Registry

http://mohfw.nic.in/

Proper citation: Ministry of Health and Family Welfare - Government of India (RRID:SCR_012124) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/microbe-inotech-laboratories-inc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 22,2024. Microbe Inotech Laboratories, Inc. (The MiL, Inc.) is your direct source for answers to all of your microbiological inquiries. We are a full-service laboratory that can provide microbial and biochemical analyses for your specific industry. Whether you are concerned about food safety or you need microbiological testing for your field, Microbe Inotech Laboratories has the expertise and advanced technologies to provide solid answers. We have more than 18 years of experience in helping our customers find practical solutions to their microbiological needs. We offer our broad range of services to manufacturers, retailers, processors, and many other industries. Our laboratory divisions are environmental, food safety, industrial, pharmaceutical and governmental.

Proper citation: Microbe Inotech Laboratories Inc. (RRID:SCR_012215) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/parabase-genomics

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 2, 2024. Parabase Genomics is a molecular diagnostic company offering whole exome sequencing services to physicians and researchers with a specialty in the identification of rare variants associated with Mendelian Disorders. Our sample processing and variant analysis pipelines are highly optimized for calling rare variants that are normally missed by less optimized workflows. At Parabase Genomics, we have combined a team of innovators and experts in genomics, pediatrics and targeted sequencing that are not available at other service organizations. Our team is also unique in that we can deliver both research and well as CLIA/CAP certified exomes with insurance reimbursement.

Proper citation: Parabase Genomics (RRID:SCR_012336) Copy   

•   Source: SciCrunch Registry

http://www.uwa.edu.au/

Public research university in the Australian state of Western Australia. The university's main campus is in Perth, the state capital, with a secondary campus in Albany and various other facilities elsewhere.

Proper citation: University of Western Australia; Perth; Australia (RRID:SCR_012342) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ngopt/

Software that produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming.

Proper citation: A5-miseq (RRID:SCR_012148) Copy   

•   Source: SciCrunch Registry

https://ocimumbio.com/

Comprehensive Integrated Life Science Informatics solutions provider with service offerings that span Sample and Data Management (LIMS, Biologics Data Management), Genomics Data Analysis Services such as Gene Expression, Genotyping, and Next Gen Sequencing, Bioinformatics and Genomics Databases (BioExpress, ToxExpress) and Bio-IT consulting services.

Proper citation: Ocimum Biosolutions (RRID:SCR_012307) Copy   

•   Source: SciCrunch Registry

http://www.iitcinc.com/Plantar.html

The IITC Plantar Analgesia Meter for thermal paw can be used on 12 mice, 6 rats and other animals (cats, rabbits) unrestrained when testing for narcotic drugs. Experiments are easy to perform, simply slide the test head under test subject, align the heat source via our exclusive guide light (idle state) by the attached, adjustable, angled mirror on test head to test subject and perform tests.

Proper citation: IITC Life Sciences Plantar Test Apparatus (RRID:SCR_012152) Copy   

•   Source: SciCrunch Registry

https://drive.google.com/file/d/1a0Hs2SPvnvrkIi3QalcgaLNkG-VmqFmv/view?usp=drivesdk

Temperature datalogger compatible with 7 types of thermocouples. This dual input thermometer accepts Types J, K, E, T, R, S, and N thermocouples. RS-232 port to transfer data to PC for analysis (PC software and cable included)

Proper citation: EA15: EasyView Dual Input Temperature Datalogger (RRID:SCR_012151) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/microbiology-quality-associates-inc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 22, 2024. Microbiology & Quality Associates, Inc., located in the San Francisco Bay Area, is a service organization providing a variety of services to life sciences companies. Our services include: contract biotech development services, testing services, consulting, validation services, calibration services, training, and scientific resources. MQA is FDA registered. Our Quality System comply with GXP regulations and ISO 17025/9001. We provide services to a wide variety of companies in biotechnology, pharmaceutical, medical devices, nutritional products, dialysis centers, semiconductors, and other industries. MQA staff has many years of hands-on experience at pharmaceutical, biotechnology and medical device companies.

Proper citation: Microbiology and Quality Associates (RRID:SCR_012270) Copy   

•   Source: SciCrunch Registry

http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm

http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm

Proper citation: Superfund basic research program (RRID:SCR_012313) Copy   

•   Source: SciCrunch Registry

https://www.primbioresearch.com/

PrimBio Research Institute uses the Ion Torrent gene sequencing platform to provide genomic sequencing services. We are also researching and developing targeted gene panels for diseases diagnosis, prevention and treatment. Provides customized analysis.

Proper citation: PrimBio Research Institute LLC (RRID:SCR_012318) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ec2kegg/

A perl-based package to perform comparative analysis of metabolic pathways between two organisms.

Proper citation: EC2KEGG (RRID:SCR_012127) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/cnvcapseq/

Software for accurate and sensitive CNV discovery and genotyping in long-range targeted resequencing.

Proper citation: cnvCapSeq (RRID:SCR_012126) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ealps/

Software that uses the genotype data in conjunction with the pooled sequence data in order to accurately estimate the proportions of the samples in the pool, even in cases where not all individuals in the pool were genotyped (eALPS-LD).

Proper citation: eALPS (RRID:SCR_012130) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/microtech-lab

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 22, 2023. Microtech Lab is a laboratory open to all researchers involved in the development of genomics projects of basic, translational, and clinical research. Our lab provides the support and tools for microarray experiments for the following applications: 1) Analysis of gene expression profiles 2) Analysis of the expression profiles of microRNA (miRNA)

Proper citation: Microtech Lab (RRID:SCR_012371) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/plek/

An alignment-free software tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic sequences or annotations. It is especially suitable for PacBio or 454 sequencing data and large-scale transcriptome data.

Proper citation: PLEK (RRID:SCR_012132) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ldx/

A computational software tool for estimating linkage disequilibrium (LD) from pooled resequencing data.

Proper citation: LDx (RRID:SCR_012131) Copy   

•   Source: SciCrunch Registry