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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Classification of Human Lung Carcinomas by mRNA Expression Profiling Reveals Distinct Adenocarcinoma Sub-classes Resource Report Resource Website 1+ mentions |
Classification of Human Lung Carcinomas by mRNA Expression Profiling Reveals Distinct Adenocarcinoma Sub-classes (RRID:SCR_003010) | data or information resource, data set | Data set of a molecular taxonomy of lung carcinoma, the leading cause of cancer death in the United States and worldwide. Using oligonucleotide microarrays, researchers analyzed mRNA expression levels corresponding to 12,600 transcript sequences in 186 lung tumor samples, including 139 adenocarcinomas resected from the lung. Hierarchical and probabilistic clustering of expression data defined distinct sub-classes of lung adenocarcinoma. Among these were tumors with high relative expression of neuroendocrine genes and of type II pneumocyte genes, respectively. Retrospective analysis revealed a less favorable outcome for the adenocarcinomas with neuroendocrine gene expression. The diagnostic potential of expression profiling is emphasized by its ability to discriminate primary lung adenocarcinomas from metastases of extra-pulmonary origin. These results suggest that integration of expression profile data with clinical parameters could aid in diagnosis of lung cancer patients. | molecular, taxonomy, lung, carcinoma, cancer, death, mrna, expression, sequence, data, adenocarcinoma, neuroendocrine, gene, type ii pneumocyte, analysis, metastasis, integration, mrna expression profiling | has parent organization: Broad Institute | Lung cancer | NCI U01 CA84995 | PMID:11707567 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30292 | SCR_003010 | Cancer Genomics Publication | 2026-02-17 10:00:09 | 2 | |||||
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EyeBrowse Resource Report Resource Website 1+ mentions |
EyeBrowse (RRID:SCR_008000) | data or information resource, data set |
EyeBrowse displays expressed sequence tag (EST) cDNA clones from eye tissues (derived from NEIBank and other sources) aligned with current versions of the human, rhesus, mouse, rat, dog, cow, chicken, or zebrafish genomes, including reference sequences for known genes. This gives a simplified view of gene expression activity from different parts of the eye across the genome. The data can be interrogated in several ways. Specific gene names can be entered into the search window. Alternatively, regions of the genome can be displayed. For example, entering two STS markers separated by a semicolon (e.g. RH18061;RH80175) allows the display of the entire chromosomal region associated with the mapping of a specific disease locus. ESTs for each tissue can then be displayed to help in the selection of candidate genes. In addition, sequences can be entered into a BLAT search and rapidly aligned on the genome, again showing eye derived ESTs for the same region. EyeBrowse includes a custom track display SAGE data for human eye tissues derived from the EyeSAGE project. The track shows the normalized sum of SAGE tag counts from all published eye-related SAGE datasets centered on the position of each identifiable Unigene cluster. This indicates relative activity of each gene locus in eye. Clicking on the vertical count bar for a particular location will bring up a display listing gene details and linking to specific SAGE counts for each eye SAGE library and comparisons with normalized sums for neural and non-neural tissues. To view or alter settings for the EyeSAGE track on EyeBrowse, click on the vertical gray bar at the left of the display. Other custom tracks display known eye disease genes and mapped intervals for candidate loci for retinal disease, cataract, myopia and cornea disease. These link back to further information at NEIBank. For mouse, there is custom track data for ChIP-on-Chip of RNA-Polymerase-II during photoreceptor maturation. |
est, expressed sequence tag, eye, gene, genome, cataract, cdna, chicken, clone, cluster, cornea, cornea disease, cow, data, disease, dog, human, locus, maturation, mouse, myopia, photoreceptor, rat, retina, rhesus, rna polymerase-ii, tag, zebrafish, data analysis software, eye tracking device |
is listed by: 3DVC has parent organization: University of California at Santa Cruz; California; USA |
Retinal disease, Cataract, Myopia, Cornea disease | NEIBank | nif-0000-07733 | SCR_008000 | EyeBrowse | 2026-02-17 10:01:17 | 3 | |||||||
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Dartmouth-Hitchcock Bioinformatics Shared Resource Resource Report Resource Website |
Dartmouth-Hitchcock Bioinformatics Shared Resource (RRID:SCR_009758) | service resource, access service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 29,2022. Core to support the implementation of bioinformatics resources for cancer research at Dartmouth. Provides consultation and collaboration for research projects of NCCC members, regular workshops, seminars, services including applied bioinformatics and data mining, computer programming and software engineering, database development and programming and high performance computing and systems administration. | cancer, research, core, service, bioinformatics, data, mining, computer, programming, software, engineering, database, administration |
is listed by: Eagle I has parent organization: Dartmouth College; New Hampshire; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156219 | http://cancer.dartmouth.edu/res/bioinformatics.html | http://dartmouth.eagle-i.net/i/0000012b-3a21-22b4-bd3e-55f580000000 | SCR_009758 | Center, Dartmouth, Norris Cotton, Hitchcock, Dartmouth-Hitchcock, Shared Resource, BISR, Bioinformatics, Cancer | 2026-02-17 10:01:35 | 0 | ||||||
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Harvard Bioinformatics Core at Joslin Diabetes Center Resource Report Resource Website |
Harvard Bioinformatics Core at Joslin Diabetes Center (RRID:SCR_009827) | service resource, access service resource, core facility | Core for data driven projects related to basic, clinical and translational research, with a particular emphasis on diabetes. Aims to ensure that researchers take advantage of the most modern and robust methods available in the field of Bioinformatics and Biostatistics. | computational, core, data, analysis, diabetes |
is listed by: Eagle I is related to: Joslin Diabetes Center has parent organization: Harvard University; Cambridge; United States |
Diabetes | nlx_156298 | http://www.joslin.org/bioinformatics.html | SCR_009827 | The Bioinformatics and Biostatistics Core at Joslin Diabetes Center, Bioinformatics and Biostatistics Core at Joslin Diabetes Center | 2026-02-17 10:01:37 | 0 | |||||||
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Howard University Center for Computational Biology and Bioinformatics Core Facility Resource Report Resource Website |
Howard University Center for Computational Biology and Bioinformatics Core Facility (RRID:SCR_009864) | Howard CCBB, CCBB | core facility, access service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27,2023. Core for bioinformatics consultation and software access. Laboratory of Molecular Computations and Bioinformatics (LMCB) is a resource facility dedicated to the support of computational biomedical research at Howard University. Provides molecular modeling, molecular dynamics, bioinformatics, and computational quantum chemistry capabilities and support to a variety of research projects at Howard University. | data, analysis, bioinformatics, software, access, consultation, molecular, computation, biomedical, quantum, chemistry |
is listed by: Eagle I has parent organization: Howard University; Washington D.C. |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156335 | https://rcmi.howard.edu/ccbb-3/ | http://www.howard.edu/medicine/rcmi/LMCB/default.htm | SCR_009864 | , LMCB, Laboratory of Molecular Computations and Bioinformatics, Howard, CCBB | 2026-02-17 10:01:19 | 0 | |||||
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CellTax vignette Resource Report Resource Website 1+ mentions |
CellTax vignette (RRID:SCR_017000) | data or information resource, data set | Cellular Taxonomy of Mouse Visual Cortex by analyzing gene expression patterns at single cell level. Construction of cellular taxonomy of one cortical region, primary visual cortex, in adult mice done on basis of single cell RNA sequencing. | data, classification, cell, type, mammalian, brain, cellular, taxonomy, mouse, visual, cortex, gene, expression, pattern, cortical, region |
is related to: Allen Brain Atlas API is related to: Allen Mouse Brain Reference Atlas is related to: Allen Cell Types Database has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Allen Institute for Brain Science ; NEI R01 EY023173; NIMH U01 MH105982 |
PMID:26727548 | Free, Public | SCR_017000 | Cellular Taxonomy of the Mouse Visual Cortex, Cellular Taxonomy of the Mouse Visual Cortex Allen Institue for Brain Science | 2026-02-17 10:03:30 | 3 | |||||||
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Maryland University Proteomics Core Facility Resource Report Resource Website |
Maryland University Proteomics Core Facility (RRID:SCR_017739) | service resource, access service resource, core facility | Facility is equipped withThermoFisher Orbitrap Fusion Lumos Tribrid mass spectrometer that is interfaced to Dionex Ultimate3000 RSLCnano HPLC system. Facility also maintains 2 separate data stations dedicated for proteomics data processing, database searching, and generation of reports. | Proteomics, mass, spectrometer, HPLC, data, processing, database, report, service, core | NIH Office of the Director S10 OD019938 | Open | ABRF_222 | SCR_017739 | Proteomics-Bioscience Cores | 2026-02-17 10:03:38 | 0 | ||||||||
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Nebraska University Medical Center Flow Cytometry Research Core Facility Resource Report Resource Website 1+ mentions |
Nebraska University Medical Center Flow Cytometry Research Core Facility (RRID:SCR_017736) | service resource, access service resource, core facility | Provides central location for flow cytometry instrumentation and education. Services include Flow Cytometry,Cell sorting, data analysis, training. Software packages to analyze data include ModFit LT, BD FACSDiva v6, Cell Quest Pro, and FlowJo vX, from facility workstations. | Flow, cytometry, cell, sorting, data, analysis, training, service, core | Nebraska Research Initiative ; Fred and Pamela Buffett Cancer Center's National Cancer Institute Cancer Support Grant ; Office of the Vice Chancellor for Research ; University of Nebraska Foundation ; Nebraska Banker Fund ; NIH NCRR Shared Instrument Program |
Open | ABRF_203 | SCR_017736 | 2026-02-17 10:03:18 | 1 | |||||||||
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Arkansas University College of Medicine Flow Cytometry Core Facility Resource Report Resource Website |
Arkansas University College of Medicine Flow Cytometry Core Facility (RRID:SCR_017741) | service resource, access service resource, core facility | Core provides flow cytometry instrumentation and analysis. Instruments include Fortessa, FacsAria and Image Stream. | Flow, cytometry, biopolymer, proteomics, data, analysis, service, core | NIGMS P20 GM103625 | ABRF_215 | SCR_017741 | Biopolymers and Proteomics Core Facility | 2026-02-17 10:03:38 | 0 | |||||||||
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South Dakota University SD BRIN Proteomics Core Facility Resource Report Resource Website |
South Dakota University SD BRIN Proteomics Core Facility (RRID:SCR_017743) | service resource, access service resource, core facility | Core provides proteomics services to researchers from South Dakota and the surrounding region to rapidly analyze and identify protein expression patterns in their experimental systems.Develops experimental design, protocols, data analysis and interpretation.Provides consulting and advice in grant proposal, as well as data preparation to be submitted to proteomics journal according to requirements.Offers training in use of common equipment such as scanner, spot cutter, imaging software, technique and protocol issues, and sample preparation. | Proteomics, protein, expression, analysis, data, experimental, design, training, service, core | NIGMS ; Sanford School of Medicine and South Dakota Biomedical Research Infrastructure Network |
Open | ABRF_224 | SCR_017743 | Proteomics Core | 2026-02-17 10:03:38 | 0 | ||||||||
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Cambridge Institute for Medical Research Bioinformatics Core Facility Resource Report Resource Website |
Cambridge Institute for Medical Research Bioinformatics Core Facility (RRID:SCR_017186) | CIMR | service resource, access service resource, core facility | Core provides biological data handling and analysis in differential expression analysis, next generation sequencing, networks, protein architecture, and motif searching for in house researchers. | bioinformatics, data, management, analysis, next, generation, sequencing, network, protein, motif | Restricted | SCR_017186 | Core Facility, CIMR, Bioinformatics, University of Cambridge, Core | 2026-02-17 10:03:32 | 0 | |||||||||
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Sainsbury Laboratory Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Sainsbury Laboratory Bioinformatics Core Facility (RRID:SCR_017185) | TSL Bioinformatics | service resource, access service resource, core facility | Core develops tools for high throughput sequence data to study non reference, non model organisms. | bioinformatics, high, throughput, sequence, data, non reference, non model, organism | Open | SCR_017185 | TSL, Core Facility, The Sainsbury Laboratory, Bioinformatics | 2026-02-17 10:03:10 | 2 | |||||||||
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Vermont University Genetics Network Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Vermont University Genetics Network Bioinformatics Core Facility (RRID:SCR_017686) | service resource, access service resource, core facility | Core provides expertise in biostatistics, microarray data analysis, proteome informatics, next generation sequencing data analysis, functional analysis, database development and information technology, including data storage infrastructure and high performance computing. Working closely with VGN Proteomics Facility, offers investigators experimental design consultations, comprehensive data analysis, data management and publishing, and manuscript and grant support. Core personnel also engage in teaching and training activities for data analysis and compute resources necessary for VGN network investigators. Our goal is to provide network researchers with bioinformatics expertise. | Vermont, genetic, network, bioinformatic, core, data, analysis, microarray, proteome, next, generation, sequencing, functional, database, core | Open | SCR_017707, ABRF_8 | SCR_017686 | Vermont Genetics Network Bioinformatics Core | 2026-02-17 10:02:55 | 1 | |||||||||
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University of Liege Interdisciplinary Cluster for Applied Genoproteomics Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
University of Liege Interdisciplinary Cluster for Applied Genoproteomics Bioinformatics Core Facility (RRID:SCR_017163) | GIGA | service resource, access service resource, core facility | Core provided by interdisciplinary center of biomedical research of Liege University. Develops and applies computational methods to extract information from large sets of biological and biomedical data. | bioinformatics, center, biomedical, data, computational, service | has parent organization: University of Liege; Wallonia; Belgium | SCR_017163 | , Bioinformatics Facility, Bioinformatics Core Facility, University of Liege, GIGA, Interdisciplinary Cluster for Applied Genoproteomics | 2026-02-17 10:03:32 | 3 | |||||||||
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Massachusetts University Medical School Radio Labeling Small Animal Translational Imaging Core Facility Resource Report Resource Website |
Massachusetts University Medical School Radio Labeling Small Animal Translational Imaging Core Facility (RRID:SCR_017728) | service resource, access service resource, core facility | Core provides consultation services to assist researchers in designing imaging studies, limited labeling services and data acquisition and analysis.Core offers following services:Single Photon Computerized Tomography (SPECT),Positron Emission Computerized Tomography (PET), X-Ray Computerized Tomography (CT),NIR Optical Imaging of small animals. | Designing, imaging, study, labeling, service, data, acquisition, analysis, single, photon, tomography, positron, emission, X-ray, optical, small, animal | Open | ABRF_147 | SCR_017728 | UMMS Radio Labeling Small Animal Imaging Core Facility | 2026-02-17 10:03:17 | 0 | |||||||||
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McGill University Advanced BioImaging Facility (ABIF) Resource Report Resource Website 50+ mentions |
McGill University Advanced BioImaging Facility (ABIF) (RRID:SCR_017697) | ABIF | service resource, access service resource, core facility | Core offers light microscopy platforms providing guidance to researchers with their projects from sample preparation to data analysis, expertise in cellular imaging including live cell imaging, FRAP, Fluorescence Lifetime Imaging Microscopy (FLIM), FRET, FCS, image correlation spectroscopy, TIRF, spectral imaging, lattice lightsheet, stimulated emission depletion (STED), high content screening, cellular image analysis, and custom image analysis, consultations, image processing, image analysis and preparation of data for publication. | Light, microscopy, cellular, imaging, live cell, FRAP, FLIM, FRET, FCS, spectroscopy, TIRF, lattice lightsheet, STED, analysis, data, core, service |
is listed by: ABRF CoreMarketplace has parent organization: McGill University; Montreal; Canada |
ABRF_118, SCR_017719 | SCR_017697 | Advanced BioImaging Facility, McGill University Advanced BioImaging Core Facility | 2026-02-17 10:03:38 | 54 | ||||||||
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University of Tübingen Quantitative Biology Center Resource Report Resource Website 1+ mentions |
University of Tübingen Quantitative Biology Center (RRID:SCR_017147) | QBiC | service resource, access service resource, core facility | Central unit for bioinformatics and omics technologies of University of Tübingen, Medical Faculty and Max Plank for Developmental Biology. Through partnering with on campus core facilities, offers services on full range of omics technologies. Data generation is complemented by integrated bioinformatics analyses, and all high throughput data is managed centrally. | data, generation, experiment, planning, | has parent organization: University of Tubingen; Tubingen; Germany | Open | SCR_017147 | QBiC, University of Tübingen, Quantitative Biology Center, University of Tübingen Quantitative Biology Center | 2026-02-17 10:03:32 | 6 | ||||||||
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Massachusetts University Medical School Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Massachusetts University Medical School Bioinformatics Core Facility (RRID:SCR_017701) | BioCore | service resource, access service resource, core facility | Core to evaluate, select, and implement computational solutions for analysis of biological data. | Bioinformatics, core, analysis, genomic, data | Restricted | ABRF_129, SCR_017716 | SCR_017701 | Bioinformatics Core | 2026-02-17 10:03:38 | 4 | ||||||||
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University of Cambridge Bioinformatics and Computational Biology Services Core Facility Resource Report Resource Website |
University of Cambridge Bioinformatics and Computational Biology Services Core Facility (RRID:SCR_017154) | service resource, access service resource, core facility | Provides assistance in characterization and analysis of genomic variants, next generation sequencing data processing and analysis, computational systems biology, HPC and big data software development for genome scale data analysis, machine learning and data mining, cloud based solutions to process and manage large amounts of data, databases and genome scale data visualization. | bioinformatics, NGS, data, mining, machine, learning, computation, service, analysis | has parent organization: University of Cambridge; Cambridge; United Kingdom | Restricted | SCR_017154 | Computational Biology, Computational Biology Services, Core Facility, Services, Bioinformatics, University of Cambridge | 2026-02-17 10:03:31 | 0 | |||||||||
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University of Texas Southwestern Medical Center Moody Foundation Flow Cytometry Core Facility Resource Report Resource Website |
University of Texas Southwestern Medical Center Moody Foundation Flow Cytometry Core Facility (RRID:SCR_017807) | service resource, access service resource, core facility | Core provides flow cytometry services to scientists, offers analytical cytometry and high-speed sorting either in investigator operated format or facility staff assisted format, offers training for research personnel interested in learning how to design flow cytometry experiments, operate instrumentation and analyze data. Services include experimental design, protocol development, sample staining, instrument operation, data analysis, graphical production, sample processing as a Service (SpaaS). Facility is equipped with three cell sorters and four cell analyzers. | Flow, cytometry, analytical, cytometry, sorting, training, design, analyze, data, cell, experiment, service, core | Moody Foundation | Open | ABRF_508 | SCR_017807 | Moody Foundation Flow Cytometry Facility | 2026-02-17 10:02:57 | 0 |
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