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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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UK Biobank Resource Report Resource Website 1000+ mentions |
UK Biobank (RRID:SCR_012815) | material storage repository, biobank, service resource, storage service resource | Biobank provides data collected at Assessment Center and via online questionnaires on participants aged 40-69 years recruited throughout United Kingdom and provides summary information to improve prevention, diagnosis and treatment of serious and life threatening illnesses. | Data, collected, United Kingdom, prevention, diagnosis, treatment, illness, questionnaire, blood, urine, saliva, cognitive function, psychological status, hearing test, interview, operation, medication, blood pressure, body measurementdie |
is listed by: One Mind Biospecimen Bank Listing is related to: AstraZeneca PheWAS Portal |
cancer, heart diseases, stroke, diabetes, arthritis, osteoporosis, eye disorders, depression, dementia. | UK Department of Health ; MRC ; Scottish Government ; Welsh Assembly Government ; Wellcome Trust |
grid.421945.f, nlx_95741, ISNI: 0000 0004 0396 0496, Wikidata: Q7864819 | https://ror.org/02frzq211 | SCR_012815 | 2026-02-15 09:20:40 | 2914 | |||||||
|
TheCellMap Resource Report Resource Website 10+ mentions |
TheCellMap (RRID:SCR_018728) | data or information resource, database, service resource | Web accessible database for visualizing and mining global yeast genetic interaction network. Allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize sub networks, using data driven network layouts in intuitive and interactive manner. Used for storing and visualizing genetic interactions in S. cerevisiae. | Genetic interactions, genetic network, yeast genetics, synthetic genetic array, network visualization, annotation, data, genetic interaction visualization | has parent organization: University of Toronto; Ontario; Canada | NHGRI R01 HG005853; NHGRI R01 HG005084; Canadian Institutes of Health Research ; NSF DBI 0953881 |
PMID:28325812 | Free, Freely available | SCR_018728 | TheCellMap.org | 2026-02-15 09:21:41 | 34 | |||||||
|
Atlas of Drosophila Development Resource Report Resource Website |
Atlas of Drosophila Development (RRID:SCR_017506) | atlas, data or information resource | Collection of color illustrations that follow main events of embryogenesis and post embryonic development of Drosophila. | Color, illustration, embrogenesis, post, embryonic, development, Drosophila, data | Free, Freely available | SCR_017506 | 2026-02-15 09:22:07 | 0 | |||||||||||
|
RegulomeDB Resource Report Resource Website 100+ mentions |
RegulomeDB (RRID:SCR_017905) | data or information resource, database, service resource | Database that annotates SNPs with known and predicted regulatory elements in intergenic regions of H. sapiens genome. Known and predicted regulatory DNA elements include regions of DNAase hypersensitivity, binding sites of transcription factors, and promoter regions that have been biochemically characterized to regulation transcription. Source of these data include public datasets from GEO, ENCODE project, and published literature. | Annotate, SNP, regulatory, DNA, element, intergenic, region, human, genome, sequence, DNAase, hypersensitivity, binding, site, transcription, factor, promoter, region, data, FASEB list | NHGRI U54 HG 004558; Beta Cell Consortium |
PMID:22955989 | Free, Freely available | SCR_017905 | 2026-02-15 09:22:09 | 123 | |||||||||
|
CoMeTa Website Resource Report Resource Website 1+ mentions |
CoMeTa Website (RRID:SCR_017357) | CoMeTa | data or information resource, database, service resource | Interactive database of miRNA targets and miRNA-regulated gene networks to integrate expression data from hundreds of cellular and tissue conditions. Website includes CoMeTa corank lists and additional targets for all of human miRNAs, their associated pathways resulting from COOL analysis, and miRNA communities with their corresponding enriched functional categories. Website is searchable by miRNA, target gene, or biological function of interest, and represents unique resource to gain insight into miRNA-controlled gene networks and functions. | Interactive, database, miRNA, target, gene, network, integrate, expression, condition, pathway, functional, data | Italian Telethon Foundation ; AIRC |
PMID:22345618 | Free, Freely available | SCR_017357 | Co-expression Meta-analysis of miRNA Target | 2026-02-15 09:21:19 | 3 | |||||||
|
ABA Mouse Brain: Atlas Resource Report Resource Website 100+ mentions |
ABA Mouse Brain: Atlas (RRID:SCR_017479) | data or information resource, database, service resource | Genome wide database of gene expression in mouse brain. Genome-wide atlas of gene expression in the adult mouse brain. | Genome, data, gene, expression, mouse, brain |
has parent organization: Allen Institute for Brain Science is provided by: Allen Brain Atlas |
PMID:17151600 | Free, Freely available | SCR_017479 | Allen Brain Atlas: Mouse Brain, , Allen Brain Atlas Mouse Brain: Atlas | 2026-02-15 09:21:21 | 328 | ||||||||
|
Geno2MP Resource Report Resource Website 1+ mentions |
Geno2MP (RRID:SCR_016872) | Geno2MP | data or information resource, database, service resource | Collection of phenotypic profiles for affected individuals and, for unaffected individuals, the phenotypic profile of their affected. Collaborative, shared resource for the human genetics community. | data, collection, Mendelian, phenotype, affected, individuals, profile, human, genetics |
is used by: MARRVEL is listed by: OMICtools |
University of Washington Center for Mendelian Genomics ; Seattle ; WA |
Free, Available for download, Freely available | SCR_016872 | Geno2MP, 2 Mendelian Phenotype, The Genotype 2 Mendelian Phenotype database | 2026-02-15 09:21:55 | 2 | |||||||
|
mousebrain.org Resource Report Resource Website 100+ mentions |
mousebrain.org (RRID:SCR_016999) | atlas, data or information resource | Atlas of brain cell types, derived from single cell RNA-Seq data from Linnarsson Lab. Can be browsed by taxon, cell type, tissue, and gene, with information on enriched genes, specific markers, anatomical location and more. Single cell gene expression atlas of mouse nervous system. | Atlas, brain cell, cell type, single cell RNA seq data, taxon, tissue, gene, marker, anatomical location, data | has parent organization: Karolinska Institute; Stockholm; Sweden | Knut and Alice Wallenberg Foundation ; Swedish Foundation for Strategic Research ; Wellcome Trust ; Swedish Research Council ; SSF ; Cancerfonden ; EU ; Hjärnfonden ; SFO Strat Regen ; European Research Council ; Ollie and Elof Ericssons Foundation ; Åke Wiberg Foundation |
PMID:30096314 | Free, Available for download, Freely available | SCR_018356 | SCR_016999 | Linnarsson lab Mouse Brain Atlas | 2026-02-15 09:21:53 | 111 | ||||||
|
ResistomeDB Resource Report Resource Website 1+ mentions |
ResistomeDB (RRID:SCR_018305) | data or information resource, database, service resource | Web tool to explore and visualize Antibiotic Resistance Genes found on Tara Oceans samples. Can be explored by individual ARG or grouped by antibiotic class. | Antibiotic Resistance Gene, Tara Oceans, data, antibiotic resistance, antibiotic, gene | DOI:10.1101/765446 | Free, Freely available | SCR_018305 | 2026-02-15 09:22:13 | 1 | ||||||||||
|
DREME Resource Report Resource Website 10+ mentions |
DREME (RRID:SCR_016860) | service resource, analysis service resource, data analysis service, production service resource | Software tool to discover short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in sequences compared with shuffled sequences or control sequences (sample output from sequences). | discover, short, ungapped, motif, sequence, compare, shuffled, control, sample, output, recurring, fixed, length, pattern, data | is listed by: MEME Suite - Motif-based sequence analysis tools | Free, Available for download, Freely avaialble | SCR_016860 | Discriminative Regular Expression Motif Elicitation, DREME | 2026-02-15 09:21:55 | 20 | |||||||||
|
MGnify Resource Report Resource Website 50+ mentions |
MGnify (RRID:SCR_016429) | portal, service resource, storage service resource, data repository, data or information resource | Portal for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. Provides functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive (ENA).Microbiome analysis resource in 2020. | analysis, exploration, metagenomic, metatranscriptomic, amplicon, assembly, data, sequence, ENA, microbial, population, environment, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Debian is listed by: bio.tools is related to: NIDDK Information Network (dkNET) |
the Biotechnology and Biological Sciences Research Council (BBSRC) BBM0117551; the Biotechnology and Biological Sciences Research Council (BBSRC) BBN0183541; the European Commission within the Research Infrastructures programme of Horizon 2020 676559; InnovateUK 102513; Research Councils UK (RCUK) ; EMBL ; the Biotechnology and Biological Sciences Research Council BBI02612X1; the Biotechnology and Biological Sciences Research Council BBM0117551; EU Seventh Framework Programme for Research MICROB3 |
PMID:31696235 | Free, Freely available, Training online available | r3d100011192, biotools:MGnify | https://bio.tools/MGnify https://doi.org/10.17616/R34W68 |
SCR_016429 | , MGnify, EBI Metagenomics | 2026-02-15 09:21:40 | 51 | |||||
|
PhonBank Resource Report Resource Website 1+ mentions |
PhonBank (RRID:SCR_016312) | service resource, storage service resource, data repository | Database for study of early phonological development using Phon program. Child phonology component of TalkBank system. | Data, early, phonological, development, Phon, program, child |
is recommended by: National Library of Medicine is related to: TalkBank |
NICHD R01 HD051698 | Free, Freely available | SCR_016312 | 2026-02-15 09:21:37 | 2 | |||||||||
|
National Children's Study (NCS) Archive Resource Report Resource Website |
National Children's Study (NCS) Archive (RRID:SCR_016311) | NCS Archive | service resource, storage service resource, data repository | Data and sample repository for National Children's Study. Provides access to data and samples collected from over 5,600 U.S. birth families to study environmental influences on child health and development. Data and biological and environmental samples are freely available, with approved request, for scientific research. | data, repository, children, child, family, study, research, health, pediatric, growth, development | is recommended by: National Library of Medicine | NICHD | Restricted | https://ncsarchive.s-3.net/ | SCR_016311 | National Children's Study, National Children's Study Archive | 2026-02-15 09:21:04 | 0 | ||||||
|
cOMet Resource Report Resource Website 1+ mentions |
cOMet (RRID:SCR_016276) | data management software, software application, software resource | Software for error correction of optical mapping data. | optical, mapping, error, correction, data, visual, image | Free, Available for download | SCR_016276 | 2026-02-15 09:21:04 | 3 | |||||||||||
|
ViewTool Cheng Lab Resource Report Resource Website |
ViewTool Cheng Lab (RRID:SCR_016430) | web application, software resource | Web application viewer for large microscopy data. | microscope, microscopy, data, portal, penn, state | Freely available | http://3d.fish/ | SCR_016430 | ViewTool ChengLab, muCT Viewer, ChengLab ViewTool | 2026-02-15 09:21:39 | 0 | |||||||||
|
Diabetes Epigenome Atlas Resource Report Resource Website 1+ mentions |
Diabetes Epigenome Atlas (RRID:SCR_016441) | portal, database, atlas, data or information resource, topical portal, disease-related portal | Collects and provides data on the human genome and epigenome to facilitate genetic studies of type 2 diabetes and its complications. A component of the AMP T2D consortium, which includes the National Institute for Diabetes and Digestive and Kidney Diseases (NIDDK) and an international collaboration of researchers. | collect, provide, data, human, genome, epigenome, genetic, study, type 2 diabetes |
has parent organization: Stanford University; Stanford; California has parent organization: University of California at San Diego; California; USA |
type 2 diabetes | NIDDK U01 DK100554 | Free, Proprietary data are available only to approved AMP consortium users with user accounts | SCR_016537 | SCR_016441 | 2026-02-15 09:21:06 | 2 | |||||||
|
Respironics Actiware Resource Report Resource Website 1+ mentions |
Respironics Actiware (RRID:SCR_016440) | data management software, software application, data processing software, software resource, software toolkit, data analysis software | Software package to analyze, manage, and export recorded activity data from all Actiwatch models. Used to view long-term sleep/wake patterns, activity, illuminance, and event markers in an easy-to-read actogram format. | Philips, Respironics, analyze, manage, export, recorded, activity, data, view, long, term, sleep, wake, pattern, actogram | Commercially available, Free trial available | SCR_016440 | 2026-02-15 09:21:52 | 7 | |||||||||||
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NeuroXM Brain Science Suite Resource Report Resource Website |
NeuroXM Brain Science Suite (RRID:SCR_016372) | software application, data visualization software, data processing software, software resource, software toolkit, data analysis software | Software toolkit for semantic integration of multi-modal brain data. It is used to collect, structure, connect, analyze and re-use brain data. | semantic, data, graph, neuroscience, neuroanatomy, ontology, circuitry, pathway, multimodal, brain | Commercially available | SCR_016372 | Brain Science Suite, NeuroXM, NeuroXM Suite | 2026-02-15 09:21:38 | 0 | ||||||||||
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Research Data Management Platform Resource Report Resource Website 1+ mentions |
Research Data Management Platform (RRID:SCR_016268) | RDMP | data management software, software application, software resource, service resource, storage service resource, data repository, data or information resource, software toolkit | Software toolkit which automates the loading, storage, linkage and provision of data sets. It also cleans, transforms and documents provenance meta-data and domain knowledge to make data sets “research ready”. | metadata, reproducibility, anonymization, security, audit, clinical, dataset, translational, research, data, management, catalogue, health, informatics, linkage | has parent organization: University of Dundee; Scotland; United Kingdom | Medical Research Council (MRC) MR/M501633/1; Wellcome Trust WT086113; EU Horizon 2020 633983 |
Free, Available for download | https://hic.dundee.ac.uk/Installers/RDMP/Stable/ | SCR_016268 | 2026-02-15 09:21:36 | 2 | |||||||
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KiloSort Resource Report Resource Website 100+ mentions |
KiloSort (RRID:SCR_016422) | software application, data processing software, algorithm resource, software resource | Software tool that implements an integrated template matching framework for detecting and clustering spikes from multi-channel electrophysiological recordings. | implement, integrated, template, matching, framework, detect, cluster, spike, multi, channel, electrophysiology, recording, data | is related to: MATLAB | Free, Available for download, Freely available | SCR_016422 | 2026-02-15 09:21:51 | 115 |
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