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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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EZcalcium Resource Report Resource Website 1+ mentions |
EZcalcium (RRID:SCR_022354) | software resource, software application, data analysis software, data processing software | Software package for MATLAB that makes motion correction, segmentation, signal extraction and dimension reduction, analysis, and visualization of calcium imaging data easy to implement. Open source toolbox for analysis of calcium imaging data. | OpenBehavior, neural signal analysis, neural recording, optical imaging, analyze calcium imaging data |
is listed by: OpenBehavior has parent organization: David Geffen School of Medicine at UCLA; California; USA |
DOI:10.3389/fncir.2020.00025 | Free, Available for download, Freely available | https://github.com/porteralab/EZcalcium | SCR_022354 | 2026-02-12 09:48:01 | 1 | ||||||||
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GuPPy Resource Report Resource Website 10+ mentions |
GuPPy (RRID:SCR_022353) | software resource, software application, data analysis software, data processing software | Software Python toolbox that makes fiber photometry data analysis intuitive and light on programming.Used to measure neural activity of freely behaving animals. | OpenBehavior, photometry analysis, neural activity measure, freely behaving animals |
is listed by: OpenBehavior has parent organization: Northwestern University Feinberg School of Medicine; Illinois; USA |
DOI:10.1038/s41598-021-03626-9 | https://github.com/LernerLab/GuPPy | SCR_022353 | Guided Photometry Analysis in Python | 2026-02-12 09:47:33 | 15 | ||||||||
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Pain Assessment at Withdrawal Speeds Resource Report Resource Website |
Pain Assessment at Withdrawal Speeds (RRID:SCR_022350) | PAWS | software resource, software application, data analysis software, data processing software | Statistical software platform for automated scoring of pain in mice.Software R package takes paw trajectory data in response to stimulus and provides automated scoring of pain. | OpenBehavior, behavior measurement, freely moving mice, behavioral data analysis, scoring of reflexive paw withdrawal | is listed by: OpenBehavior | DOI:10.7554/eLife.57258 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/paws/ | SCR_022350 | 2026-02-12 09:48:00 | 0 | |||||||
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Mouse Action Recognition System Resource Report Resource Website 1+ mentions |
Mouse Action Recognition System (RRID:SCR_022347) | MARS | software resource, software application, data analysis software, data processing software | Software Python pipeline for automated detection, pose estimation, and behavior classification in socially interacting mice.Used for pose estimation and behavior quantification in pairs of freely behaving mice. | OpenBehavior, behavior measurement, video analysis, real time recording and analysis, pose estimation and behavior quantification, freely behaving mice |
is listed by: OpenBehavior is related to: MARS Developer has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://github.com/neuroethology/MARS | SCR_022347 | 2026-02-12 09:47:35 | 7 | |||||||
|
PavCA project Resource Report Resource Website |
PavCA project (RRID:SCR_022508) | PavCA | topical portal, portal, data or information resource | Project related to tracking behavior. Used to identify subgroups of individuals that differentially attribute incentive value to food cue. Includes apparatus for studying Pavlovian conditioned approach behavior. Customized rat PavCA chambers are constructed based on modular devices purchased from Med-Associates. Code used to operate equipment and collect data was written using Med-Associates’ MEDSTATE programming language. This program is then loaded into Med-PC V operating program, also created by Med-Associates. | Behavior, behavior analysis, Pavlovian conditioning, apparatus, Pavlovian conditioned approach, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: University at Buffalo; New York; USA |
Free, Freely available | SCR_022508 | Pavlovian Conditioned Approach, PavCA | 2026-02-12 09:47:38 | 0 | ||||||||
|
SIPEC Resource Report Resource Website |
SIPEC (RRID:SCR_022364) | SIPEC | software resource, software application, data analysis software, data processing software | Software pipeline for video analysis. Deep learning Swiss knife for behavioral data analysis.Performs segmentation, identification, pose-estimation and classification of complex behaviour. Used for analysis of behavior of multiple animals in complex environments. | OpenBehavior, video analysis, behavioral data analysis |
is listed by: OpenBehavior has parent organization: ETH Zurich; Zurich; Switzerland |
DOI:10.1038/s42256-022-00477-5 | Free, Available for download, Freely available | https://github.com/SIPEC-Animal-Data-Analysis/SIPEC | SCR_022364 | SIPEC project | 2026-02-12 09:47:35 | 0 | ||||||
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Timed pressure control hardware and software for delivery of air mediated distensions in animal models Resource Report Resource Website 1+ mentions |
Timed pressure control hardware and software for delivery of air mediated distensions in animal models (RRID:SCR_022363) | data or information resource, portal, project portal, instrument resource | System uses Arduino microcontroller to control relay module that operates solenoid valve which all sit in 3D printed housing. Solenoid works in conjunction with flowmeter regulator to allow for controlled flow of pressurized air into target. Timing of distensions is controlled via either custom Python based UI, or by triggered TTL pulse.Timed pressure control hardware and software used for delivery of air mediated distensions in animal models. | OpenBehavior, Instrument, behavior apparatus, delivery of air mediated distensions, animal models | is listed by: OpenBehavior | DOI:10.1016/J.OHX.2022.E00271 | Free, Freely available | https://osf.io/rs5p4 | SCR_022363 | Timed pressure control hardware and software for delivery of air mediated distensions in animal models project | 2026-02-12 09:48:01 | 1 | |||||||
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OpenPose Resource Report Resource Website 1+ mentions |
OpenPose (RRID:SCR_022362) | software resource, software application, data analysis software, data processing software | Software tool as multi subject keypoint detection library for real time pose estimation.Used to track behavior of monkeys in natural environments, without disrupting their typical pattern of behavior. Deep learning software system for body, face, hands, and foot estimation in monkeys. | OpenBehavior, tracking limb orientation, behavior measurement, freely moving, realtime recording and analysis, video analysis | is listed by: OpenBehavior | DOI:10.1101/2021.01.28.428726 | Free, Available for download, Freely available | https://github.com/CMU-Perceptual-Computing-Lab/openpose | SCR_022362 | 2026-02-12 09:47:33 | 9 | ||||||||
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TRex Resource Report Resource Website |
TRex (RRID:SCR_022361) | software resource, software application, data analysis software, data processing software | Open source animal tracking software tool. Used to visually track movement of multiple animals at once. | OpenBehavior, animal tracking, visually track movement | is listed by: OpenBehavior | DOI:10.7554/eLife.64000 | https://github.com/mooch443/trex | SCR_022361 | 2026-02-12 09:47:22 | 0 | |||||||||
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DLStream Resource Report Resource Website 1+ mentions |
DLStream (RRID:SCR_022359) | software resource, software application, data analysis software, data processing software | Software tool enables closed loop behavioral experiments using deep learning based markerless, real time posture detection.Closed loop behavioral experiment toolkit using pose estimation of body parts. | OpenBehavior, video analysis, behavioral experiment, pose estimation, body parts | is listed by: OpenBehavior | Projekt DEAL | DOI:10.1038/s42003-021-01654-9 | Free, Available for download, Freely available | https://github.com/SchwarzNeuroconLab/DeepLabStream | SCR_022359 | DeepLabStream | 2026-02-12 09:48:01 | 1 | ||||||
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Variational Embedding of Animal Motion Resource Report Resource Website 1+ mentions |
Variational Embedding of Animal Motion (RRID:SCR_022477) | VAME | software application, data processing software, software resource, data visualization software | Software Python tool to cluster behavioral signals obtained from pose estimation tools. Unsupervised probabilistic deep learning framework capable of finding behavioral motifs in pose estimation data. Capable of augmenting quantitative behavioral analyses of data derived from standard pose-estimation software packages. Written based on core functions from DeepLabCut, and readily works with pose data from that package. Can also work with data from other pose estimation packages such as SLEAP. | OpenBehavior, vame, variational embedding of animal motion, pytorch, pose estimation |
is listed by: OpenBehavior is related to: DeepLabCut is related to: SLEAP, LEAP and MotionMapper project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/vame/ | SCR_022477 | Variational Animal Motion Embedding, VAME: Variational Embedding of Animal Motion | 2026-02-12 09:47:24 | 2 | |||||||
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Pyneal Resource Report Resource Website |
Pyneal (RRID:SCR_022333) | software resource, software application, data analysis software, data processing software | Open source software package to support rt-fMRI via data in formats generated by Siemens, Philips, and GE. Used to support real time functional magnetic resonance imaging. | OpenBehavior, real time functional magnetic resonance imaging | is listed by: OpenBehavior | DOI:10.3389/fnins.2020.00900 | Free, Available for download, Freely available | https://github.com/jeffmacinnes/pyneal | SCR_022333 | 2026-02-12 09:47:32 | 0 | ||||||||
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AutoStereota Resource Report Resource Website 1+ mentions |
AutoStereota (RRID:SCR_022330) | data or information resource, portal, project portal, instrument resource | Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. | OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2018.10.013 | Free, Freely available | https://github.com/liang-bo/AutoStereota | SCR_022330 | 2026-02-12 09:47:34 | 2 | ||||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | data or information resource, portal, project portal, instrument resource | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | Raspberry Pi based auditory stimulus generator project | 2026-02-12 09:47:35 | 0 | |||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | software application, data processing software, software resource, data visualization software | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | 2026-02-12 09:47:23 | 0 | ||||||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | software resource, software application, data analysis software, data processing software | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | ABA project | 2026-02-12 09:47:35 | 0 | ||||||
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FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | software resource, software application, data analysis software, data processing software, data visualization software | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab https://flybrainlab.fruitflybrain.org/ |
SCR_022337 | 2026-02-12 09:47:32 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | software resource, software application, data analysis software, data processing software | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-02-12 09:48:00 | 0 | ||||||||
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Pi USB Cam project Resource Report Resource Website |
Pi USB Cam project (RRID:SCR_022834) | data or information resource, portal, project portal, instrument resource | Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. | OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals |
is listed by: OpenBehavior has parent organization: University of Illinois at Chicago; Illinois; USA |
DOI:10.1523/ENEURO.0224-22.2022 | Free, Freely available | SCR_022834 | Pi USB Cam system, Pi USB Cam | 2026-02-12 09:48:10 | 0 | ||||||||
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DANNCE Resource Report Resource Website 1+ mentions |
DANNCE (RRID:SCR_023061) | software resource, software application, data processing software, 3d visualization software, data visualization software | Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking. | OpenBehavior, track animals, pose information, 3D positions, video data, multiple cameras, 3D markerless pose estimation and tracking, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=DANNCE | SCR_023061 | 3-Dimensional Aligned Neural Network for Computational Ethology | 2026-02-12 09:47:33 | 1 |
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