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https://www.eneuro.org/content/10/5/ENEURO.0127-22.2023
Open source, adaptable tracking system for multiple rodents. Scalable and customizable system for tracking and behavior assessment consists of Raspberry Pi based video and RFID acquisition. Maximum of six rodents of any coat color can be tracked simultaneously in any user defined arena with few restrictions. For pose estimation and travel trajectory analysis, PyMouseTracks supports interfacing with open source packages such as DeepLabCut and Traja.
Proper citation: PyMouseTracks (RRID:SCR_024453) Copy
https://www.eneuro.org/content/10/8/ENEURO.0212-23.2023
Simple, lightweight, and low cost customizable multielectrode array for Local Field Potential recordings. Used to collect LFP data from different brain regions simultaneously in rats. Can be modified to record single unit and multiunit activity in addition to LFP activity using both wired and wireless neural data acquisition systems.
Proper citation: Customizable Multielectrode Array (RRID:SCR_024551) Copy
https://github.com/EwellNeuroLab?tab=repositories
Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings.
Proper citation: LFP Monitoring (RRID:SCR_024428) Copy
https://edspace.american.edu/openbehavior/project/attys/
Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device.
Proper citation: Attys project (RRID:SCR_021461) Copy
https://edspace.american.edu/openbehavior/project/autonomouse/
Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day.
Proper citation: AutonoMouse project (RRID:SCR_021462) Copy
https://edspace.american.edu/openbehavior/project/autoreward2/
Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists.
Proper citation: Autoreward2 project (RRID:SCR_021460) Copy
https://edspace.american.edu/openbehavior/project/bpm-biosignals/
Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals.
Proper citation: BPM Biosignals project (RRID:SCR_021459) Copy
https://edspace.american.edu/openbehavior/project/automated-mouse-homecage-two-bottle-choice-test/
Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test.
Proper citation: Automated mouse homecage two bottle choice test project (RRID:SCR_021457) Copy
https://edspace.american.edu/openbehavior/project/closed-loop-system/
Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system.
Proper citation: Closed Loop System project (RRID:SCR_021475) Copy
https://edspace.american.edu/openbehavior/project/usv-detector/
Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations.
Proper citation: Ultrasonic Vocalizations Detector project (RRID:SCR_021471) Copy
https://ethowatcher.paginas.ufsc.br/
Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals.
Proper citation: EthoWatcher (RRID:SCR_021504) Copy
Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice.
Proper citation: Feldman Lab Lickometer project (RRID:SCR_021469) Copy
https://github.com/arnefmeyer/mousecam
Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.
Proper citation: Mousecam (RRID:SCR_021503) Copy
https://edspace.american.edu/openbehavior/project/hao-chen-lab-repository/
Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data.
Proper citation: Hao Chen Lab Repository project (RRID:SCR_021467) Copy
https://edspace.american.edu/openbehavior/project/pidose/
Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module.
Proper citation: PiDose project (RRID:SCR_021441) Copy
https://edspace.american.edu/openbehavior/project/openeyetrack/
Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux.
Proper citation: openEyeTrack project (RRID:SCR_021399) Copy
https://edspace.american.edu/openbehavior/project/actifield/
Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity.
Proper citation: Actifield project (RRID:SCR_021452) Copy
https://edspace.american.edu/openbehavior/project/rad/
Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge.
Proper citation: Rodent Activity Detector project (RRID:SCR_021451) Copy
https://edspace.american.edu/openbehavior/project/homecage-2bottle-choice/
Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task.
Proper citation: Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) Copy
https://edspace.american.edu/openbehavior/project/pasta/, https://github.com/ikodvanj/ratPASTA/
Project related to multifunctional neurobehavioral system developed by scientists at University of Zagreb School of Medicine, Zagreb, Croatia.System includes hardware and software tools.Provides software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.
Proper citation: Platform for Acoustic STArtle project (RRID:SCR_021446) Copy
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