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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Conticabase - European Sarcoma Database and Tumour Bank Resource Report Resource Website 1+ mentions |
Conticabase - European Sarcoma Database and Tumour Bank (RRID:SCR_004832) | Conticabase | tissue bank, material resource, biomaterial supply resource | This database contains anonymized information describing the tumor, treatment and follow-up as well as tumor sample availability and molecular biology analyses for mesenchymal tumors except GIST and bone tumors. The query tool allows users to ask questions about the overall content of the database in order to evaluate the feasibility of specific collaborative studies. We hope this database will become an important tool for increasing our knowledge on these rare tumors and for developing joint research programs. The tool can be used as a local center database thanks to its rules for access to patient data and material. Conticabase currently contains the following data from 31 out of the 48 registered centers (Last modification on 28/03/2012): * 11518 Patients * 11562 Tumors * 13897 Samples (13636 Paraffin and 5773 Frozen) Use of conticabase data At anytime, a data manager can export data of patients from his (her) Centre or group according to his (her) level of rights. To obtain data from another Centre, a partner should ask the coordinator of the corresponding Centre for these data. To use data for a cooperative study, a member should write a short text describing the project and send it to partners of interest. Each partner may decide whether to participate or not and therefore, whether to send or not the corresponding data to the project leader. In the event that the data from the conticabase result in a publication, acknowledgement is required. Use of tumour material entered in the ConticaBank To obtain material from another Centre for a cooperative study, a partner should write a short text describing the project and send it to the partners of interest. Each partner may decide whether to participate or not and, therefore, whether to send or not the corresponding material to the project leader. In the event that the material used result in a publication, acknowledgement is required. | tumor, tissue, tumor tissue, mesenchymal tumor, bone tumor, rare tumor, paraffin, frozen, sarcoma, tumor, cancer, clinical data, imaging, pathological data, treatment, follow up | is listed by: One Mind Biospecimen Bank Listing | Sarcoma, Tumor | Collaborators - Varying: Use of tumour material entered in the ConticaBank: To obtain material from another Centre for a cooperative study, A partner should write a short text describing the project and send it to the partners of interest. Each partner may decide whether to participate or not and, Therefore, Whether to send or not the corresponding material to the project leader. | nlx_81679 | https://www.conticabase.org/ | SCR_004832 | CONTICANET database and tumor bank, CTCN database and tumour bank, CONTICANET database tumour bank, Conticabase - European Sarcoma Database Tumor Bank, CONTICANET database tumor bank, Conticabase - European Sarcoma Database Tumour Bank, CONTICANET database and tumour bank | 2026-02-16 09:46:20 | 6 | |||||
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Erasmus MC Tissue Bank Resource Report Resource Website |
Erasmus MC Tissue Bank (RRID:SCR_004945) | Erasmus MC Tissue Bank | tissue bank, material resource, biomaterial supply resource | The Erasmus MC Virtual Tissue Bank is embedded in the department of Pathology. The collection is meant for medical research purposes only. This concerns a typical clinical based pathology biobank. Tissue samples left over from surgical resection specimen are stored under liquid nitrogen and can be requested by Erasmus MC scientists for medical scientific experiments. An application has been developed to enable scientists to search the collection on-line and request tissue samples over the Erasmus MC Intranet. Every request shall be judged according to procedures determined by the Erasmus MC Tissue Bank. A growing need is anticipated for large collections of well-diagnosed fresh frozen tumor tissue and, if available, corresponding pre-malignant and normal tissue samples. Scientific research on patient residual material has to comply with strict rules and regulations. Equipment The Erasmus MC Tissue bank manages the PALM microdissection laser for the center for Biomics, which is available through the center for Biomics ONLY after having followed an introduction course. Additionally, a complete TMA (Tissue Micro Array) platform, fully funded by the Josephine Nefkens Stichting, consisting of a Beecher Automated Tissue Arrayer ATA 27 and a Virtual Microscope or Nanozoomer from Hamamatsu and Medical Solutions with TMA analyses software strongly supports translational research on tissue samples. Complete histologic Images from the Virtual Microscope are available within the Erasmus MC Intranet or available on the Internet either by overview or a direct example. | clinical, tumor tissue, tissue, pre-malignant tissue, normal tissue, liquid nitrogen, fresh frozen, frozen, tumor | is listed by: One Mind Biospecimen Bank Listing | Tumor | European Union | Private: Tissue samples left over from surgical resection specimen are stored under liquid nitrogen and can be requested by Erasmus MC scientists for medical scientific experiments. | nlx_91504 | http://www.erasmusmc.nl/pathologie/clinicalpathology/tissuebank/161390/ | SCR_004945 | Erasmus Medical Center Tissue Bank, Erasmus MC Virtual Tissue Bank | 2026-02-16 09:46:33 | 0 | ||||
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University of Texas Tumor Bank Resource Report Resource Website |
University of Texas Tumor Bank (RRID:SCR_005048) | UTMB SCCCB Human Tumor Bank Core | tissue bank, material resource, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. | tissue, tumor tissue, dna, rna, frozen, paraffin, fresh, cancer, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Texas Medical Branch at Galveston |
Cancer, Tumor | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_99346 | SCR_005048 | UTMB Human Tumor Bank Core, University of Texas Medical Branch Human Tumor Bank Core, UTMB Tumor Bank, UTMB Sealy Center for Cancer Cell Biology Human Tumor Bank Core, SCCCB Human Tumor Bank Core | 2026-02-16 09:46:26 | 0 | ||||||
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NCI Breast and Colon Cancer Family Registries Resource Report Resource Website 1+ mentions |
NCI Breast and Colon Cancer Family Registries (RRID:SCR_006664) | Breast and Colon CFR | tissue bank, material resource, biomaterial supply resource | The Breast Cancer Family Registry (Breast CFR) and the Colon Cancer Family Registry (Colon CFR) were established by the National Cancer Institute (NCI) as a unique resource for investigators to use in conducting studies on the genetics and molecular epidemiology of breast and colon cancer. Known collectively as the CFRs, they share a central goal: the translation of research to the clinical and prevention settings for the benefit of Registry participants and the general public. The CFRs are particularly interested in: * Identifying and characterizing cancer susceptibility genes; * Defining gene-gene and gene-environment interactions in cancer etiology; and * Exploring the translational, preventive, and behavioral implications of research findings. The CFRs do not provide funding for studies; however, researchers can apply to access CFR data and biospecimens contributed by thousands of families from across the spectrum of risk for these cancers and from population-based or relative controls. Special features of the CFRs include: * Population-based and clinic-based ascertainment; * Systematic collection of validated family history; * Epidemiologic risk factor , clinical, and followup data; * Biospecimens (including tumor blocks and Epstein-Barr virus (EBV)-transformed cell lines); * Ongoing molecular characterization of the participating families; and * A combined informatics center. | breast, colon, breast cancer, colon cancer, biospecimen, tumor block, epstein-barr virus-transformed cell line, cell line, cancer, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: National Cancer Institute |
Breast cancer, Colon cancer, Cancer, Tumor | NCI | Public: Researchers can apply to access CFR data and biospecimens contributed by thousands of families from across the spectrum of risk for these cancers and from population-based or relative controls. | nlx_143711 | SCR_006664 | 2026-02-16 09:46:46 | 3 | ||||||
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GSE1456 Resource Report Resource Website 100+ mentions |
GSE1456 (RRID:SCR_003642) | GSE1456 | data set, data or information resource | Curated series of expression data for 159 tumors from which RNA could be collected in sufficient amounts and quality for analysis from breast cancer patients. Tissue material was collected from all breast cancer patients receiving surgery at Karolinska Hospital from 1994-1996. | adult human, breast |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Breast cancer, Tumor | Free, Public | nlx_157793 | SCR_003642 | 2026-02-16 09:46:05 | 184 | |||||||
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Target genes of Wnt/beta-catenin signaling Resource Report Resource Website 10+ mentions |
Target genes of Wnt/beta-catenin signaling (RRID:SCR_007022) | Target genes of Wnt/beta-catenin signaling | data set, data or information resource | A list of target genes of Wnt/beta-catenin signaling. Suggestions for additions are welcome. Direct targets are defined as those with Tcf binding sites and demonstrating that these sites are important. | target gene, wnt/beta-catenin signaling, wnt, beta-catenin, signaling, gene | has parent organization: Stanford University; Stanford; California | Colon cancer, Tumor, Adenocarcinoma, Melanoma, Cancer | The community can contribute to this resource | nlx_156867 | SCR_007022 | 2026-02-16 09:46:52 | 24 | |||||||
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UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology Resource Report Resource Website |
UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology (RRID:SCR_005957) | Biobanks of the Department of Clinical Pathology and Cytology | instrument supplier, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 6th, 2022. The biobank comprises paraffin blocks of surgical and autopsy tissue samples and corresponding histological slides as well as cytological material consisting of slides of vaginal smears, fine needle aspiration biopsies and exfoliative cytological material. The tissue samples date back until 1944 and most of the cytological samples until 1970. A subunit of the bank constitutes the National Tissue Microarray Centre. This center is supported by SWEGENE with the purpose to organize and construct tissue microarrays (TMA:s) for high throughput molecular pathology research on various kinds of tumors and other diseases. By linking the TMA.s to long-term and complete clinical follow-up data, prognostic and predictive studies will be facilitated. Biobank content: * Approximately 2,4 million paraffin blocks of surgical tissue specimens, * 1,1 million paraffin blocks of tissue samples from autopsies, * 3,8 million histological slides and * 1,6 million cytology slides. At present, the Tissue Microarray Centre includes: * A consecutive series of all invasive breast cancers (n=600) diagnosed in Malmo between 1988 and 1992. * All incident breast cancers within the Malmo Diet and Cancer cohort (n=400). * A subgroup of 600 pre-menopausal primary breast cancers within the nationwide, population-based randomized tamoxifen trial SBII:2. * 180 primary breast cancers from post-menopausal women included in a similar study. * A set of 120 extremely well characterized primary breast cancer samples with a clinical follow-up of 10 years. More than 40 relevant tumor biological parameters have been recorded in this material and it is therefore useful for a first screening of a marker in order to identify associations to other gene products. * 350 renal cell carcinomas (In collaboration with NUS). We provide researchers with state-of-the-art population based tissue microarrays with long-term and complete follow-up data on survival and treatment. With the TMA-technology, valuable biobank material will be preserved, allowing high throughput in-situ analyses of various tumors and other diseases with a minimal waste of tissue. | surgery, autopsy, histology slide, vaginal smear, fine needle aspiration, biopsy, tissue microarray, tumor, disease, cancer, diet, renal cell, kidney |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Swedish National Biobank Program |
Breast cancer, Cancer, Tumor, Carcinoma | SWEGENE | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151315 | SCR_005957 | UMAS University Hospital - Biobanks of the Department of Clinical Pathology Cytology | 2026-02-16 09:46:35 | 0 |
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