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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
NIDDK Central Repository
 
Resource Report
Resource Website
50+ mentions
NIDDK Central Repository (RRID:SCR_006542) CDR, NIDDKCDR material storage repository, data repository, storage service resource, biospecimen repository, data or information resource, service resource, database NIDDK Central Repositories are two separate contract funded components that work together to store data and samples from significant, NIDDK funded studies. First component is Biorepository that gathers, stores, and distributes biological samples from studies. Biorepository works with investigators in new and ongoing studies as realtime storage facility for archival samples.Second component is Data Repository that gathers, stores and distributes incremental or finished datasets from NIDDK funded studies Data Repository helps active data coordinating centers prepare databases and incremental datasets for archiving and for carrying out restricted queries of stored databases. Data Repository serves as Data Coordinating Center and website manager for NIDDK Central Repositories website. clinical supply resource, data, clinical, sample sharing, genotyping, genotype, phenotype, genetic analysis, data sharing, genetics, serum, plasma, stool, urine, dna, red blood cell, buffy coat, tissue, immortalized cell line, cell line, data set, digestive organ, kidney, diabetes, kidney disease, digestive disease, genome-wide association study, sequencing, FASEB list uses: DataCite
is used by: NIDDK Information Network (dkNET)
is used by: NIF Data Federation
is used by: NIH Heal Project
is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
lists: HEALTHY study
lists: Nonalcoholic Steatohepatitis Clinical Research Network
lists: HALT-C Trial
lists: Type 1 Diabetes Genetics Consortium
lists: TEDDY
lists: Type 1 Diabetes TrialNet
lists: Rare and Atypical Diabetes Network
lists: Diabetes Prevention Program
lists: Diabetes Prevention Program Outcomes Study
lists: Restoring Insulin Secretion Consortium (RISE)
lists: Epidemiology of Diabetes Interventions and Complications
lists: Diabetes Control and Complications Trial
lists: Treatment Options for type 2 Diabetes in Adolescents and Youth
is listed by: One Mind Biospecimen Bank Listing
is listed by: re3data.org
is listed by: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
is listed by: NIDDK Information Network (dkNET)
is related to: NCBI database of Genotypes and Phenotypes (dbGap)
is related to: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C
is related to: Chronic Renal Insufficiency Cohort Study
has parent organization: RTI International
NIDDK PMID:23396299
PMID:21959867
PMID:16595012
Restricted nlx_152673, r3d100010377 https://doi.org/10.17616/R3WP48 https://www.niddkrepository.org, SCR_006542 NIDDK Central Repository, National Institute of Diabetes and Digestive and Kidney Diseases Central Repository, NIDDKCentral Repositories 2026-02-13 10:55:51 85
TEDDY
 
Resource Report
Resource Website
1+ mentions
TEDDY (RRID:SCR_000383) TEDDY clinical trial, portal, consortium, data or information resource, organization portal, database International consortium of six centers assembled to participate in the development and implementation of studies to identify infectious agents, dietary factors, or other environmental agents, including psychosocial factors, that trigger type 1 diabetes in genetically susceptible people. The coordinating centers recruit and enroll subjects, obtaining informed consent from parents prior to or shortly after birth, genetic and other types of samples from neonates and parents, and prospectively following selected neonates throughout childhood or until development of islet autoimmunity or T1DM. The study tracks child diet, illnesses, allergies and other life experiences. A blood sample is taken from children every 3 months for 4 years. After 4 years, children will be seen every 6 months until the age of 15 years. Children are tested for 3 different autoantibodies. The study will compare the life experiences and blood and stool tests of the children who get autoantibodies and diabetes with some of those children who do not get autoantibodies or diabetes. In this way the study hopes to find the triggers of T1DM in children with higher risk genes. consortium, gene, infectious agent, dietary factor, environmental factor, young human, insulin, child, pediatric, autoantibody, blood, stool, biomaterial supply resource, longitudinal, neonate, parent, genetic risk, genetic factor, observation, prospective, serum, plasma, peripheral blood mononuclear cell, saliva, nasal swab, nail clipping, water, dna, virus, nutrition, toxic agent, socioeconomic, psychosocial, male, female, environment, exposure, diet, toxin, infectious agent, bacterial, viral, immunization is listed by: One Mind Biospecimen Bank Listing
is listed by: ClinicalTrials.gov
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Central Repository
is related to: Teddy study IA prediction
has parent organization: University of South Florida; Florida; USA
Type 1 diabetes, Diabetes NIDDK 2UC4DK063829 PMID:21564455 nlx_152857 SCR_000383 The Environmental Determinants of Diabetes in the Young, TEDDY study 2026-02-13 10:54:39 3
Trans-Institute Angiogenesis Research Program
 
Resource Report
Resource Website
Trans-Institute Angiogenesis Research Program (RRID:SCR_000384) TARP data or information resource, portal, topical portal, resource Trans-NIH program encouraging and facilitating the study of the underlying mechanisms controlling blood vessel growth and development. Other aims include: to identify specific targets and to develop therapeutics against pathologic angiogenesis in order to reduce the morbidity due to abnormal blood vessel proliferation in a variety of disease states; to better understand the process of angiogenesis and vascularization to improve states of decreased vascularization; to encourage and facilitate the study of the processes of lymphangiogenesis; and to achieve these goals through a multidisciplinary approach, bringing together investigators with varied backgrounds and varied interests. blood vessel, growth, development, target, therapeutic, vascularization, angiogenesis, lymphangiogenesis is listed by: NIDDK Information Network (dkNET)
has parent organization: National Institutes of Health
Angiogenesis, Lymphangiogenesis JDRF ;
NEI ;
NHLBI ;
NCI ;
NICHD ;
NIDDK ;
NINDS
THIS RESOURCE IS NO LONGER IN SERVICE nlx_152866 SCR_000384 Trans-Institute Angiogenesis Research Program (TARP) 2026-02-13 10:54:39 0
National Glycohemoglobin Standardization Program
 
Resource Report
Resource Website
500+ mentions
National Glycohemoglobin Standardization Program (RRID:SCR_015885) NGSP data or information resource, portal, project portal Project that aims to standardize Hemoglobin A1c test results to those of the Diabetes Control and Complications Trial (DCCT) and United Kingdom Prospective Diabetes Study (UKPDS) which established the direct relationships between HbA1c levels and outcome risks in patients with diabetes. glycohemoglobin, diabetes, dcct, ukpds, hba1c, diabetes patient, hemoglobin, a1c is listed by: NIDDK Information Network (dkNET)
is listed by: Diabetes Research Centers
Diabetes NIDDK UC4 DK096587 Public SCR_015885 NGSP: National Glycohemoglobin Standardization Program 2026-02-12 09:46:39 922
dkCOIN
 
Resource Report
Resource Website
1+ mentions
dkCOIN (RRID:SCR_004438) dkCOIN data or information resource, database, resource THIS RESOURCE IS NO LONGER IN SERVICE, documented October 13, 2014. The resource has moved to the NIDDKInformation Network (dkNET) project. Contact them at info_at_dknet.org with any questions. Database of large pools of data relevant to the mission of NIDDKwith the goal of developing a community-based network for integration across disciplines to include the larger DKuniverse of diseases, investigators, and potential users. The focus is on greater use of this data with the objective of adding value by breaking down barriers between sites to facilitate linking of different datasets. To date (2013/06/10), a total of 1,195 resources have been associated with one or more genes. Of 11,580 total genes associated with resources, the ten most represented are associated with 359 distinct resources. The main method by which they currently interconnect resources between the providers is via EntrezGene identifiers. A total of 780 unique genes provide the connectivity between 3,159 resource pairs across consortia. To further increase interconnectivity, the groups have been further annotating their data with additional gene identifiers, publications, and ontology terms from selected Open Biological and Biomedical Ontologies (OBO). gene, adenovirus construct, antibody, co-immunoprecipitation, embryonic stem cell line, functional genomics, histology, mouse strain, pcr primer, protocol, real time pcr, metadata, diabetes, stem cell, metabolism, tissue development, web service, cloud, embryonic stem cell is used by: NIF Data Federation
is related to: Beta Cell Biology Consortium
is related to: NIDDK Information Network (dkNET)
is related to: National Mouse Metabolic Phenotyping Centers
is related to: Nuclear Receptor Signaling Atlas
is related to: Diabetic Complications Consortium
is related to: T1DBase
is related to: OBO
has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
NIDDK 3U01DK072473-05S3;
NIDDK 5U24DK076169;
NIDDK U19DK062434
PMID:22734043 THIS RESOURCE IS NO LONGER IN SERVICE nlx_44256 SCR_004438 NIDDKConsortium Interconnectivity Network 2026-02-12 09:43:51 1
Digestive Diseases Statistics for the United States
 
Resource Report
Resource Website
Digestive Diseases Statistics for the United States (RRID:SCR_006703) Digestive Diseases Statistics for the United States data or information resource, resource A collection of statistics about specific digestive diseases, including prevalence, mortality, care delivery and cost. epidemiology, prevalence, mortality, care delivery, cost, statistics, ambulatory care visit, hospitalization, inpatient procedure, surgical procedure is related to: NIDDK Information Network (dkNET)
has parent organization: National Digestive Diseases Information Clearinghouse
Digestive disease, Viral Hepatitis, Hepatitis B, Hepatitis A, Hepatitis C, Peptic Ulcer Disease, Pancreatitis, Liver disease, Irritable Bowel Syndrome, Ulcerative colitis, Hemorrhoid, Gastrointestinal infection, Gastroesophageal reflux disease, Gallstone, Diverticular disease, Chronic constipation, Abdominal wall hernia NIDDK nlx_152697 SCR_006703 Digestive Diseases in the United States: Epidemiology and Impact 2026-02-12 09:44:17 0
Motif Mutation Analysis for Regulatory Genomic Elements
 
Resource Report
Resource Website
500+ mentions
Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) MMARGE data processing software, data analysis software, software toolkit, software application, software resource Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation. genome wide genetic variation, epigenetic data, identify collaborative transcription factor pairs, interpreting functional effects, non-coding genetic variation NCI CA173903;
NIGMS GM085764;
NIDDK DK091183;
NHLBI R00 123485
PMID:29893919 Free, Available for download, Freely available SCR_021902 2026-02-13 10:58:40 608
ToppCluster
 
Resource Report
Resource Website
100+ mentions
ToppCluster (RRID:SCR_001503) ToppCluster data analysis service, analysis service resource, resource, production service resource, service resource A tool for performing multi-cluster gene functional enrichment analyses on large scale data (microarray experiments with many time-points, cell-types, tissue-types, etc.). It facilitates co-analysis of multiple gene lists and yields as output a rich functional map showing the shared and list-specific functional features. The output can be visualized in tabular, heatmap or network formats using built-in options as well as third-party software. It uses the hypergeometric test to obtain functional enrichment achieved via the gene list enrichment analysis option available in ToppGene. term enrichment, gene, analysis, gene enrichment analysis, connectivity, heatmap, ortholog, microarray, function, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is related to: GenitoUrinary Development Molecular Anatomy Project
is related to: ToppGene Suite
NIDDK 1U01DK70219;
NIDDK P30DK078392;
NCRR U54 RR025216;
NIDCR U01DE020049
PMID:20484371 Free OMICS_02225, nlx_152801, biotools:toppcluster https://bio.tools/toppcluster SCR_001503 ToppCluster: A multiple gene list feature analyzer for the dissection of biological systems 2026-02-13 10:54:51 144
National Digestive Diseases Information Clearinghouse
 
Resource Report
Resource Website
National Digestive Diseases Information Clearinghouse (RRID:SCR_006771) NDDIC resource, data or information resource, service resource, narrative resource, training material Information dissemination service of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) established to increase knowledge and understanding about digestive diseases among people with these conditions and their families, health care professionals, and the general public: online, in booklets and fact sheets, by email, and over the phone. To carry out this mission, NDDIC works closely with a coordinating panel of representatives from Federal agencies, voluntary organizations on the national level, and professional groups to identify and respond to informational needs about digestive diseases. NDDIC provides the following informational products and services: * Response to inquiries about digestive diseases - ranging from information about available patient and professional education materials to statistical data. By phone (8:30 a.m. to 5 p.m. eastern time, M-F), fax, mail, and email. * Publications about specific digestive diseases, provided free of copyright, in varying reading levels. Available online or as booklets and brochures. NDDIC also sends publications to health fairs and community events. * Referrals to health professionals through the National Library of Medicine''''s MEDLINEplus includes a consumer-friendly listing of organizations that will assist you in your search for physicians and other health professionals. * Exhibits at professional meetings specific to digestive diseases, as well as cross-cutting professional meetings. NDDIC exhibits at nine professional meetings each year, including Digestive Diseases Week, American College of Gastroenterology, Society of Gastroenterology Nurses and Associates, American Academy of Family Physicians, American Academy of Physician Assistants, American Nurses Association, and the National Conference for Nurse Practitioners. digestive health, disease, statistics, publication, bowel control, complication, diabetes, digestive, kidney, urologic, topical portal is related to: NIDDK Information Network (dkNET)
has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is parent organization of: Digestive Diseases Statistics for the United States
Digestive disease, Celiac disease NIDDK Free, Public nlx_152710 SCR_006771 National Digestive Diseases Information Clearinghouse (NDDIC) 2026-02-13 10:55:56 0
University of Pennsylvania Diabetes Research Center
 
Resource Report
Resource Website
1+ mentions
University of Pennsylvania Diabetes Research Center (RRID:SCR_015732) DRC disease-related portal, data or information resource, portal, topical portal NIDDK center that serves diabetes-oriented investigators from University of Pennsylvania as well as additional institutions from the mid-Atlantic region. The Penn DRC represents many basic science and clinical departments at Penn and the other institutions, and supports research in diabetes and obesity via Scientific Cores, a Pilot and Feasibility Grant Program, and a series of seminars, retreats, and other academic enrichment activities. diabetes, research, univeristy of pennsylvania, upenn, obesity, metabolic disorder is listed by: NIDDK Information Network (dkNET) NIDDK P30DK19525 Available to affiliated researchers http://www.med.upenn.edu/
https://diabetescenters.org/
SCR_015732 2026-02-13 10:57:40 1
HIRN Consortium on Targeting and Regeneration
 
Resource Report
Resource Website
HIRN Consortium on Targeting and Regeneration (RRID:SCR_016201) HIRN-CTAR, CTAR, CTR, HIRN-CTR data or information resource, organization portal, portal, consortium Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is investigating methods to increase or maintain functional beta cell mass in T1D through targeted manipulation of islet plasticity or engineered protection of beta cells from immune-mediated destruction. plasticity, bioengineering, cell, beta, cell, death is organization facet of: Human Islet Research Network (HIRN) NIDDK ;
NIDDK U01 DK104162;
NIDDK UC4 DK104211;
NIDDK UC4 DK104204;
NIDDK UC4 DK104209;
NIDDK UC4 DK104143;
NIDDK UC4 DK104119;
NIDDK UC4 DK116241;
NIDDK UC4 DK116264;
NIDDK UC4 DK116252;
NIDDK UC4 DK116255;
NIDDK UC4 DK116280
SCR_016201 Consortium on Targeting and Regeneration (HIRN-CTAR) 2026-02-13 10:57:44 0
BioPlex
 
Resource Report
Resource Website
1000+ mentions
BioPlex (RRID:SCR_016144) data repository, storage service resource, data or information resource, service resource, database Database of cell lines with each expressing a tagged version of a protein from the ORFeome collection. The overarching project goal is to determine protein interactions for every member of the collection. cell, line, protein, immunopurification, mass, spectrometry, interaction, bio.tools, FASEB list is listed by: bio.tools
is listed by: Debian
has parent organization: Harvard Medical School; Massachusetts; USA
NHGRI U41HG006673;
NIDDK K01 DK098285;
Canadian Institutes for Health Research
PMID:28514442 biotools:bioplex_2.0 https://bio.tools/bioplex_2.0 SCR_016144 BioPlex (biophysical interactions of ORFeome-based complexes), Harvard BioPlex, Biophysical Interactions of Orfeome-based comPLEXes (BioPLEX) 2026-02-13 10:57:43 1355
HIRN Consortium on Human Islet Biomimetics
 
Resource Report
Resource Website
HIRN Consortium on Human Islet Biomimetics (RRID:SCR_016199) HIRN-CHIB, CHIB data or information resource, organization portal, portal, consortium Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is combining advances in beta cell biology and cell biology with tissue engineering technologies to develop microdevices that support functional human islets. beta, cell, biology, tissue, bioengineering, nanoengineering, human, stem is organization facet of: Human Islet Research Network (HIRN) NIDDK ;
NIDDK U01 DK104162;
NIDDK UC4 DK104208;
NIDDK UC4 DK104196;
NIDDK UC4 DK104202;
NIDDK UC4 DK104165;
NIDDK UC4 DK116283
SCR_016199 Consortium on Human Islet Biomimetics (HIRN-CHIB) 2026-02-13 10:57:46 0
HIRN Consortium on Beta Cell Death and Survival
 
Resource Report
Resource Website
HIRN Consortium on Beta Cell Death and Survival (RRID:SCR_016198) HIRN-CBDS, CBDS data or information resource, organization portal, portal, consortium Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is using human tissues to discover highly specific biomarkers of beta cell injury in asymptomatic T1D and developing strategies to stop beta cell destruction early in the disease process. kidney, tissue, biomarker, beta, cell, t1d, disease, research is organization facet of: Human Islet Research Network (HIRN) NIDDK ;
NIDDK U01 DK104162;
NIDDK UC4 DK104205;
NIDDK UC4 DK104155;
NIDDK UC4 DK104167;
NIDDK UC4 DK104166;
NIDDK UC4 DK104159;
NIDDK UC4 DK104216;
NIDDK UC4 DK108132;
NIDDK UC4 DK108101;
NIDDK UC4 DK108120;
NIDDK UC4 DK116274;
NIDDK UC4 DK116278;
NIDDK UC4 DK116271
SCR_016198 Consortium on Beta Cell Death and Survival (HIRN-CBDS) 2026-02-13 10:57:42 0
HIRN Coordinating Center
 
Resource Report
Resource Website
HIRN Coordinating Center (RRID:SCR_016395) HIRN CC, HIRNCC data or information resource, organization portal, portal, consortium Consortium that provides infrastructure to promote communication and collaboration among current and future HIRN participants, facilitating scientific advances and the sharing of data, tools, and reagents among HIRN members and the research community at large. coordination, hirn, human, islet, research, center, administration is organization facet of: Human Islet Research Network (HIRN) NIDDK U01 DK104162 SCR_016395 Human Islet Research Center Coordinating Center 2026-02-13 10:57:48 0
RNA22
 
Resource Report
Resource Website
100+ mentions
RNA22 (RRID:SCR_016507) RNA22 sequence analysis software, data processing software, data analysis software, software application, software resource Software tool as a pattern based algorithm for detecting microRNA binding sites and their corresponding microRNA and mRNA complexes. Allows interactive exploration and visualization of miRNA target predictions. Permits link-out to external expression repositories and databases. pattern, based, detecting, microRNA, binding, site, complex, sequence, genome, analysis, FASEB list is listed by: OMICtools A Star ;
Singapore ;
NIDDK DK04763;
NIH AI54973
Free, Available for download, Freely available SCR_016507 RiboNucleic Acid 22 2026-02-13 10:57:47 192
Prevention of Lower Urinary Tract Symptoms
 
Resource Report
Resource Website
Prevention of Lower Urinary Tract Symptoms (RRID:SCR_016923) PLUS data or information resource, organization portal, portal, consortium Research consortium from many different fields to plan, perform and analyze the studies that are needed to help researchers conduct future prevention and intervention for Lower Urinary Tract Symptoms (LUTS) in women. plan, perform, analyze, data, prevent, lower, urinary, track, symptom, women is listed by: NIDDK Information Network (dkNET)
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
is related to: University of Minnesota Medical School; Minnesota; USA
NIDDK SCR_016923 Prevention of Lower Urinary Tract Symptoms, Prevention LUTS, PLUS 2026-02-13 10:57:48 0
Kidney Precision Medicine Project
 
Resource Report
Resource Website
50+ mentions
Kidney Precision Medicine Project (RRID:SCR_016920) KPMP the community can contribute to this resource, project portal, portal, consortium, availability annotation standard, data or information resource, organization portal, nif annotation standard, narrative resource, disease-related portal, topical portal, standard specification Project to ethically obtain and evaluate human kidney biopsies from participants with Acute Kidney Injury (AKI) or Chronic Kidney Disease (CKD), create a kidney tissue atlas, define disease subgroups, and identify critical cells, pathways, and targets for novel therapies. Used to develop the next generation of software tools to visualize and understand the various components of kidney diseases and to optimize data collection. Multi site collaboration comprised of patients, clinicians, and investigators from across the United States. ethically, obtain, evaluate, human, kidney, biopsy, collaboration, patient, clinician, researcher, acute, injury, chronic, disease, tissue, atlas, cell, pathway, target, novel, therapy, data, collection is listed by: NIDDK Information Network (dkNET)
is related to: Kidney Tissue Atlas
Acute Kidney Injury, Chronic Kidney Disease NIDDK Open resource for academics, industry, and the broader scientific community SCR_016920 Kidney Precision Medicine Project, The Kidney Precision Medicine Project 2026-02-13 10:57:51 53
PICRUSt
 
Resource Report
Resource Website
10+ mentions
PICRUSt (RRID:SCR_016855) PICRUSt software resource, simulation software, software application Software package to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes. Used to predict which gene families are present and then combines gene families to estimate the composite metagenome. predict, metagenome, functional, content, DNA, sample, marker, gene, sequence, data, microbiome, 16S, RNA is related to: PICRUSt2 Canadian Institutes of Health Research ;
Canada Research Chairs program ;
Howard Hughes Medical Institute ;
NIDDK P01 DK078669;
NHGRI U01 HG004866;
NHGRI R01 HG004872;
Crohn’s and Colitis Foundation of America ;
Sloan Foundation ;
NHGRI R01 HG005969;
NSF CAREER DBI1053486;
ARO W911NF1110473
PMID:23975157 Free, Available for download, Freely available SCR_016856 SCR_016855 Phylogenetic Investigation of Communities by Reconstruction of Unobserved States, PICRUSt 2026-02-13 10:57:52 36
TopDom
 
Resource Report
Resource Website
10+ mentions
TopDom (RRID:SCR_016964) TOPDOM data processing software, data analysis software, software toolkit, software application, software resource Software tool to identify Topological Domains, which are basic builiding blocks of genome structure. Detects topological domains in a linear time., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. identify, topological, domain, genome, structure, linear, time, data, analysis has parent organization: University of Southern California; Los Angeles; USA
works with: CCTOP
NHLBI U01 HL108634;
NIDDK U54 DK107981;
NSF CAREER 0747475;
NSF CAREER 1150287;
Arnold and Mabel Beckman foundation ;
Pew Charitable Trusts
PMID:26704975 THIS RESOURCE IS NO LONGER IN SERVICE SCR_016964 TOPological DOMains, Topological Domains, TopDom_v0.0.2, TopDom_v0.0.1 2026-02-13 10:57:49 10

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