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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Nature Publishing Group Resource Report Resource Website 1+ mentions |
Nature Publishing Group (RRID:SCR_008741) | NPG | commercial organization | Nature Publishing Group (NPG) is a publisher of high impact scientific and medical information in print and online. NPG publishes journals, online databases and services across the life, physical, chemical and applied sciences and clinical medicine. Focusing on the needs of scientists, Nature (founded in 1869) is the leading weekly, international scientific journal. In addition, for this audience, NPG publishes the Nature research journals and Nature Reviews journals, plus a range of prestigious academic journals including society-owned publications. Online, nature.com provides over 6 million visitors per month with access to NPG publications and online databases and services, including news and comment from Nature, NatureJobs plus access to Nature Network and Nature Education''s Scitable.com. Scientific American is at the heart of NPG''s newly-formed consumer media division, meeting the needs of the general public. Founded in 1845, Scientific American is the oldest continuously published magazine in the US and the leading authoritative publication for science in the general media. Together with scientificamerican.com and 16 local language editions around the world it reaches over 3 million consumers and scientists. Other titles include Scientific American Mind and Spektrum der Wissenschaft in Germany. Scientific American is available for site license access on the nature.com platform. Throughout all its businesses NPG is dedicated to serving the scientific and medical communities and the wider scientifically interested general public. Part of Macmillan Publishers Limited, NPG is a global company with principal offices in London, New York and Tokyo, and offices in cities worldwide including Boston, Buenos Aires, Delhi, Hong Kong, Madrid, Barcelona, Munich, Heidelberg, Basingstoke, Melbourne, Paris, San Francisco, Seoul and Washington DC. Read our history for a timeline of NPG and the scientific events which have helped shape the direction of the business. | publishing, science, medicine, clinical medicine |
is affiliated with: SourceData is related to: Antibodypedia is parent organization of: NextGenSeq(at)nature.com is parent organization of: Journal of Cerebral Blood Flow and Metabolism is parent organization of: Nature Online Video Streaming Archive is parent organization of: Naturejobs is parent organization of: nature.com blogs is parent organization of: Nature Network is parent organization of: Protocol Exchange is parent organization of: Nature Precedings is parent organization of: Functional Glycomics Research |
nlx_143840 | SCR_008741 | npg: nature publishing group | 2026-02-14 02:01:46 | 1 | ||||||||
|
YunBe Resource Report Resource Website |
YunBe (RRID:SCR_008740) | YunBe | software resource | A gene set analysis algorithm for biomarker identification in the cloud. | mapreduce/hadoop | is listed by: OMICtools | PMID:22084254 | OMICS_01227 | SCR_008740 | 2026-02-14 02:01:44 | 0 | ||||||||
|
DIAMOND Resource Report Resource Website 1000+ mentions |
DIAMOND (RRID:SCR_009457) | DIAMOND | software resource | Software to: view dicom files and assemble them into 3D volumes. View and convert between Analyze, Nifti, and Interfile. Classify and organize dicoms and 3D volumes using metadata. Search and report on a collection of scans. | reusable library, analyze, database application, dicom, format conversion, image display, image reconstruction, magnetic resonance, nifti, python, software, visualization, workflow, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
nlx_155603 | SCR_009457 | UC Davis IDeA Lab Applications for Management Of Neuroimaging Data | 2026-02-14 02:01:50 | 4152 | ||||||||
|
CBS High-Res Brain Processing Tools Resource Report Resource Website 10+ mentions |
CBS High-Res Brain Processing Tools (RRID:SCR_009452) | CBS High-Res Brain Processing Tools | software resource | A fully automated processing pipeline for cortical analysis of structural MR images at a resolution of up to 400������m, including skull stripping, whole brain segmentation, cortical extraction, surface inflation and mapping, as well as dedicated tools for profile estimation across the cortical thickness. The tools are released as a set of plug-ins for the MIPAV software package and the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats. | magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: JIST: Java Image Science Toolkit is related to: MIPAV: Medical Image Processing and Visualization |
Free | nlx_155596 | SCR_009452 | 2026-02-14 02:01:50 | 20 | ||||||||
|
FGDP Resource Report Resource Website |
FGDP (RRID:SCR_008910) | FGDP | software resource | A Java-based, Microarray or Genechip data analysis system. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Fox Chase Cancer Center |
PMID:14734324 | GNU General Public License | OMICS_00756, biotools:fgdp | https://bio.tools/fgdp | SCR_008910 | Functional Genomics Data Pipeline (FGDP), Functional Genomics Data Pipeline | 2026-02-14 02:01:47 | 0 | |||||
|
elk-reasoner Resource Report Resource Website |
elk-reasoner (RRID:SCR_008913) | ELK | software resource | ELK is an ontology reasoner with the goal of supporting the OWL 2 EL profile. ELK is a specialized reasoner for the lightweight ontology language OWL EL. The practical utility of ELK is in its combination of high performance and comprehensive support for language features. At its core, ELK employs a consequence-based reasoning engine that can take advantage of multi-core and multi-processor systems. A modular architecture allows ELK to be used as a stand-alone application, Protege plug-in, or programming library (either with or without the OWL API). | owl ontology reasoning el, owl, ontology, semantic web, reasoner, description logic, reasoner, ontology reasoner, owl el |
is listed by: Gene Ontology Tools has parent organization: University of Oxford; Oxford; United Kingdom has parent organization: Ulm University; Baden-Wurttemberg; Germany |
EPSRC EP/G02085X/1 | Open unspecified license, Apache License v2 | nlx_151493 | SCR_008913 | ELK Reasoner | 2026-02-14 02:01:39 | 0 | ||||||
|
Biomatik Resource Report Resource Website 500+ mentions |
Biomatik (RRID:SCR_008944) | Biomatik | commercial organization | An Antibody supplier, Core facility | is listed by: ScienceExchange | nlx_152303, SciEx_8952 | SCR_008944 | 2026-02-14 02:01:47 | 869 | ||||||||||
|
Beckman Coulter Resource Report Resource Website 100+ mentions |
Beckman Coulter (RRID:SCR_008940) | commercial organization | An Organization portal, Material service resource, Antibody supplier, Instrument supplier | biotechnology, diagnostic, life science, biomedical, testing, analyzer, immunochemistry, dna analysis, flow cytometer |
is related to: ONE Study is parent organization of: Diagnostic Systems Laboratories |
nlx_152293 | SCR_008940 | Beckman Coulter Inc. | 2026-02-14 02:01:48 | 154 | |||||||||
|
A sample size calculation method Resource Report Resource Website |
A sample size calculation method (RRID:SCR_009469) | A sample size calculation method | software resource | Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data. R code is available from the corresponding author. | is listed by: OMICtools | PMID:24314022 | OMICS_01228 | SCR_009469 | 2026-02-14 02:01:40 | 0 | |||||||||
|
NGC Resource Report Resource Website |
NGC (RRID:SCR_009342) | NGC | software resource | A compressor for aligned HTS sequencing data that enables the complete lossless and lossy compression of mapped alignment data stored in SAM/BAM files. | is listed by: OMICtools | PMID:23066097 | OMICS_00964 | SCR_009342 | 2026-02-14 02:01:40 | 0 | |||||||||
|
AMERICAN DIAGNOSTICA Resource Report Resource Website |
AMERICAN DIAGNOSTICA (RRID:SCR_008928) | commercial organization | An Antibody supplier. | nlx_152266 | http://american-diagnostica.de, https://sekisuidxcoag.com/ | SCR_008928 | Sekisu | 2026-02-14 02:01:49 | 0 | ||||||||||
|
Gecko Resource Report Resource Website 500+ mentions |
Gecko (RRID:SCR_009001) | Gecko | software resource | A complete, high-capacity centralized gene expression analysis system, developed in response to the needs of a distributed user community. |
is listed by: OMICtools has parent organization: SourceForge |
PMID:15588317 | OMICS_00758 | SCR_009001 | Gene Expression: Computation and Knowledge Organization, Geckoe | 2026-02-14 02:01:49 | 500 | ||||||||
|
Quip Resource Report Resource Website 50+ mentions |
Quip (RRID:SCR_009362) | Quip | software resource | Compresses next-generation sequencing data in the FASTQ and SAM/BAM formats with extreme prejudice. | is listed by: OMICtools | OMICS_00965 | SCR_009362 | 2026-02-14 02:01:49 | 53 | ||||||||||
|
Sigma-Aldrich Resource Report Resource Website 10000+ mentions |
Sigma-Aldrich (RRID:SCR_008988) | commercial organization | American chemical, life science and biotechnology company owned by Merck KGaA. Merger of Sigma Chemical Company and Aldrich Chemical Company. Provides organic and inorganic chemicals, building blocks, reagents, advanced materials and stable isotopes for chemical synthesis, medicinal chemistry and materials science, antibiotics, buffers, carbohydrates, enzymes, forensic tools, hematology and histology, nucleotides, proteins, peptides, amino acids and their derivatives. | Commercial, organization, chemical, life science, biotechnology, company, Merck, reagent |
uses: GenomeCompiler is related to: GenomeCompiler is parent organization of: Cell Signaling and Neuroscience: Pathway Slides and Charts is parent organization of: BioReliance |
nlx_152460 | SCR_008988 | Aldrich, Sigma, Merck KGsA, Merck, Sigma Aldrich | 2026-02-14 02:01:49 | 140489 | |||||||||
|
Santa Cruz Biotechnology Resource Report Resource Website 10000+ mentions |
Santa Cruz Biotechnology (RRID:SCR_008987) | commercial organization | An Antibody supplier | nlx_152453 | SCR_008987 | Santa Cruz Biotechnology inc., SantaCruz, Santa Cruz | 2026-02-14 02:01:40 | 42301 | |||||||||||
|
OriGene Resource Report Resource Website 500+ mentions |
OriGene (RRID:SCR_008985) | OriGene | commercial organization | A research tool company focused on the creation of the largest commercial collection of full-length human cDNAs in a standard expression vector. The availability of the complete human genome sequence and the subsequent development of genome-based tools have enabled the identification of relevant drug targets through system biology approaches. OriGene''s vision is to prepare comprehensive, genome wide research tools and technology platforms to enable scientists to study complete biological pathways, thus enabling a better understanding of disease mechanisms including cancer and stem cell research. OriGene Technologies uses high-throughput, genome wide approach to develop products for pharmaceutical, biotechnology, and academic research. Their flagship product is the cDNA clone collection, a searchable gene bank of over 30,000 human full-length TrueClone cDNA collection and over 25,000 TrueORF cDNA clones. From their TrueORF cDNA clones, they have developed the largest offering of full length human proteins expressed in mammalian cells, ideal for functional studies. Their TrueMAB project develops mouse monoclonal antibodies against protein antigens with the goal to develop protein assays for every human protein. They also offer complete molecular biology services from codon optimization, gene synthesis, protein expression and assay development. In addition, they offer unique gene expression products such as TissueScan cancer tissue qPCR arrays and tissue biorepository for biomarker discovery and validation. |
is listed by: ScienceExchange is listed by: One Mind Biospecimen Bank Listing is related to: Origene China |
nlx_152424, SciEx_9281 | https://www.scienceexchange.com/facilities/origene-technologies-inc | SCR_008985 | OriGene Technologies Inc., OriGene Technologies | 2026-02-14 02:01:48 | 779 | ||||||||
|
5 PRIME Resource Report Resource Website 10+ mentions |
5 PRIME (RRID:SCR_008982) | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 2nd, 2022. Antibody supplier. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152240 | SCR_008982 | 2026-02-14 02:01:50 | 10 | |||||||||||
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3H Biomedical AB Resource Report Resource Website 1+ mentions |
3H Biomedical AB (RRID:SCR_008981) | commercial organization | An Antibody supplier | nlx_152239 | SCR_008981 | 2026-02-14 02:01:48 | 3 | ||||||||||||
|
MFCompress Resource Report Resource Website 1+ mentions |
MFCompress (RRID:SCR_009301) | MFCompress | software resource | A compression tool for FASTA and multi-FASTA files. | is listed by: OMICtools | PMID:24132931 | OMICS_00963 | SCR_009301 | 2026-02-14 02:01:50 | 3 | |||||||||
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RLZ Resource Report Resource Website |
RLZ (RRID:SCR_009420) | RLZ | software resource | Optimized relative Lempel-Ziv compression of genomes. | is listed by: OMICtools | OMICS_00966 | SCR_009420 | Relative Lempel-Ziv Compression of Genomes | 2026-02-14 02:01:51 | 0 |
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