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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Malaga Andalusian Platform of Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
University of Malaga Andalusian Platform of Bioinformatics Core Facility (RRID:SCR_017169) | SCBI, scbi | access service resource, core facility, service resource, data or information resource | Provides assistance in computing, nanotechnology, and biological fields. Provides scientific support and resources to the UMA research groups, public institutions and private companies. | bioinformatics, computing, nanotechnology, biology, data | has parent organization: University of Malaga; Andalusia; Spain | Open | SCR_017169 | Universidad de Malaga, scbi, UMA, Plataforma Andaluza de Bioinformatica, University of Malaga, SCBI, Supercomputing and Bioinnovation Center | 2026-02-15 09:21:59 | 9 | ||||||||
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Mayo Clinic Rochehster Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Mayo Clinic Rochehster Bioinformatics Core Facility (RRID:SCR_017161) | Mayo Clinic Bioinformatics Core | data analysis service, service resource, production service resource, core facility, access service resource, analysis service resource | Core assists in genomics, proteomics and metabolomics data acquisition, management, analyses and interpretation to Mayo investigators. Participates in Basic science research, Clinical trials, Population health, and Translational science to execute analytical workflows and manage large omics data sets. Provides support to Mayo Clinic Center for Individualized Medicine and Mayo Clinic Cancer Center. Has its academic home in Department of Health Sciences Research within Division of Biomedical Statistics and Informatics. | bioinformatics, data, acquisition, management, analysis, genomics, proteomics, metabolomics | has parent organization: Mayo Clinic | Restricted | SCR_017161 | Bioinformatics Core, Division of Biomedical Statistics and Informatics, Rochehster, Mayo Clinic, Core Facility | 2026-02-15 09:21:59 | 2 | ||||||||
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Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility Resource Report Resource Website |
Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility (RRID:SCR_017160) | data analysis service, software resource, service resource, production service resource, core facility, access service resource, analysis service resource | Core provides assistance in primary analysis of sequencing data and other large scale biocomputing. For our internal users we host extensive web services, workflows and customized tools that help with data management, visualizations, standardized analyses and data sharing. | bioinformatics, biocomputing, sequencing, data, omics, analysis, visualization, management | has parent organization: Max Planck Institiute of Immunobiology and Epigenetics; Freiburg; Germany | Restricted | SCR_017160 | , Bioinformatics Facility, Core Facility, Bioinformatics Core Facility, Epigenetics, Max Planck Institiute of Immunobiology | 2026-02-15 09:21:57 | 0 | |||||||||
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University of Michigan School of Medicine Center of Computational Medicine and Bioinformatics Core Facility Resource Report Resource Website |
University of Michigan School of Medicine Center of Computational Medicine and Bioinformatics Core Facility (RRID:SCR_017179) | UM School of Medicine Computational Medicine and Bioinformatics, CCMB, Center of Computational Medicine and Bioinformatics | access service resource, core facility, service resource, data or information resource | University interdisciplinary academic center for bioinformatics, biomedical data science, and translational precision health informatics. Core provides training programs. | Bioinformatics, biomedical, data, translational, informatics | Restricted | SCR_017179 | University of Michigan, CCMB, Computational Medicine and Bioinformatics, UM, School of Medicine | 2026-02-15 09:21:58 | 0 | |||||||||
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IBM® MarketScan® Research Databases Resource Report Resource Website 10+ mentions |
IBM® MarketScan® Research Databases (RRID:SCR_017212) | data or information resource, data set, database | Software suite of proprietary databases that contain one of longest running and largest collection of privately and publicly insured, de identified patient data in USA. Family of data sets that fully integrate many types of data for healthcare research. | Database, dataset, collection, patient, data, healthcare | Available for purchase | SCR_017212 | 2026-02-15 09:21:16 | 37 | |||||||||||
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CytExpert Software Resource Report Resource Website 500+ mentions |
CytExpert Software (RRID:SCR_017217) | software application, data processing software, software resource, data acquisition software, data analysis software | Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter. | control, instrument, data, collection, analysis, CytoFLEX Platform, Beckman Coulter, flow, cytometry |
is listed by: OMICtools works with: Beckman Coulter CytoFLEX LX Flow Cytometer |
OMICS_30185 | SCR_017217 | 2026-02-15 09:21:59 | 888 | ||||||||||
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PennAI Resource Report Resource Website |
PennAI (RRID:SCR_017215) | data management software, software application, data visualization software, data processing software, software resource, data analysis software | Open source software tool to leverage supervised machine learning techniques to analyze data. Can assist with tasks such as choosing appropriate models for data. Data science assistant for generating results from large and complex data problems. | Supervised, machine, learning, technique, data, mining, storing, analysis, visualizationn, artificial, intelligence | has parent organization: University of Pennsylvania; Philadelphia; USA | Free, Available for download, Freely available | http://pennai.org/ https://epistasislab.github.io/pennai/ |
SCR_017215 | Accessible artificial intelligence from University of Pennsylvania | 2026-02-15 09:21:59 | 0 | ||||||||
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University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility Resource Report Resource Website |
University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility (RRID:SCR_017173) | CGAT | data analysis service, service resource, production service resource, core facility, data or information resource, access service resource, training service resource, analysis service resource | Core provides genomics training, as well as assistance in next generation sequencing analyses. | bioinformatics, genomics, next, generation, sequencing, data, analysis | has parent organization: University of Oxford; Oxford; United Kingdom | Restricted | SCR_017173 | Medical Sciences Division, Computational Genomics: Analysis and Training Core Facility, CGAT, University of Oxford, Computational Genomics Analysis and Training Core Facility | 2026-02-15 09:21:59 | 0 | ||||||||
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Montreal Clinical Research Bioinformatics Core Facility Resource Report Resource Website |
Montreal Clinical Research Bioinformatics Core Facility (RRID:SCR_017176) | IRCM BIF, BIF | data analysis service, service resource, production service resource, core facility, data or information resource, access service resource, training service resource, analysis service resource | Core to support scientists within and outside IRCM in analysis of biological and clinical data, in particular high throughput genomic data. Operating on collaborative basis and paid services. Provides assistance with Data analysis for RNA-Seq, ChIP-Seq, RIP-Seq, DNA methylation, DNA-Seq, targeted sequencing of rRNAs, microarrays, customized training courses. | bioinformatics, genomic, omics, data, analysis, RNA-Seq, CHIP-Seq, RIP-Seq, DNA, methylation, DNA-Seq, rRNA, microarray | Restricted | SCR_017176 | , Institute of Clinical Research of Montreal, IRCM, Bioinformatics Core Facility, BIF | 2026-02-15 09:21:58 | 0 | |||||||||
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Centre for Genome Regulation Bioinformatics Core Facility Resource Report Resource Website |
Centre for Genome Regulation Bioinformatics Core Facility (RRID:SCR_017145) | Biocore CRG | software resource, training resource, service resource, core facility, access service resource | Provides services of consultation and data analysis, with focus on Next Generation Sequencing and other high throughput experiments, software and database development, and training in basic and advanced bioinformatics techniques. Services provided for fee to support collaborative grant funded investigations. | bioinformatics, NGS, consultation, data, analysis, next, generation, sequencing | has parent organization: Centre for Genomic Regulation; Barcelona; Spain | Restricted | SCR_017145 | Bioinformatics Core, , Core Facility, Centre for Genomic Regulation, Biocore, CRG | 2026-02-15 09:21:57 | 0 | ||||||||
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Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions Resource Report Resource Website |
Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions (RRID:SCR_017140) | HIBACHI, hibachi | software application, simulation software, software resource | Software tool that creates data sets with particular characteristics. Method and open source software for simulating complex biological and biomedical data to aid in comparing and evaluating machine learning methods. | data, simulation, dataset, compare, machine, evaluate, learning, method | NLM LM012601; NIAID AI116794; NIDDK DK112217 |
PMID:29218887 | Free, Available for download, Freely available | SCR_017140 | Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions | 2026-02-15 09:21:57 | 0 | |||||||
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OMTools Resource Report Resource Website 1+ mentions |
OMTools (RRID:SCR_017143) | software application, data visualization software, data processing software, software resource, alignment software, image analysis software, software toolkit, data analysis software | Software package for optical mapping data processing, analysis and visualization. Used to handle and explore large scale optical mapping profiles. | optical, mapping, data, processing, analysis, visualization, large, scale, profile, phylogenesis | is listed by: SoftCite | Food and Health Bureau of the Hong Kong Special Administrative Region ; Chinese University of Hong Kong ; HKSAR Research Grants Council ; Lo Kwee-Seong Biomedical Research Fund ; Lee Hysan Foundation |
PMID:28505226 | Free, Available for download, Freely available | SCR_017143 | 2026-02-15 09:21:15 | 2 | ||||||||
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FateID Resource Report Resource Website 1+ mentions |
FateID (RRID:SCR_017244) | software application, data processing software, data analysis software, software resource | Software R package for inference of cell fate bias from single cell RNA-seq data. Iterative supervised learning algorithm for probabilistic quantification of cell fate bias in progenitor populations. | inference, cell, fate, bias, single, RNAseq, data, iterative, supervised, learning, algorithm, probabilistic, quantification, progenitor, population, bio.tools |
is listed by: bio.tools is listed by: Debian |
PMID:29630061 | Free, Available for download, Freely available | biotools:fateid | https://bio.tools/fateid | SCR_017244 | 2026-02-15 09:22:00 | 2 | |||||||
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NeuroAnatomy Toolbox Resource Report Resource Website 1+ mentions |
NeuroAnatomy Toolbox (RRID:SCR_017248) | NAT | software application, data visualization software, data processing software, software resource, 3d visualization software, data analysis software | Software R package for 3D visualisation and analysis of biological image data, especially tracings of single neurons. | 3D, visualization, analysis, data, image, single, neuron, tracing |
is listed by: OMICtools is related to: R Project for Statistical Computing has parent organization: MRC Laboratory of Molecular Biology |
Restricted | OMICS_18884 | http://jefferislab.github.io. https://CRAN.R-project.org/package=nat |
SCR_017248 | nat, , NeuroAnatomy Toolbox | 2026-02-15 09:22:00 | 4 | ||||||
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ascend Resource Report Resource Website 1+ mentions |
ascend (RRID:SCR_017257) | software application, data processing software, data analysis software, software resource | Software R package for analysis of single cell RNA-seq expression, normalization and differential expression data. Provides framework to perform cell and gene filtering, quality control, normalization, dimension reduction, clustering, differential expression, and visualization functions. | analysis, single, cell, RNAseq, expression, normalization, data, gene, filtering, quality, control, dimension, reduction, clustering, visualization, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: CRAN is related to: Bioconductor |
PMID:31505654 | Free, Available for download, Freely available | biotools:ascend | https://bio.tools/ascend | SCR_017257 | Normalization and Differential expression, ASCEND, Analysis of Single Cell Expression | 2026-02-15 09:22:00 | 2 | ||||||
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vini: A viewer for fMRI data Resource Report Resource Website |
vini: A viewer for fMRI data (RRID:SCR_017250) | software application, data visualization software, data processing software, software resource | Software Python tool as viewer for MRI data and numpy arrays. | viewer, MRI, data, numpy, array | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | https://github.com/lipsia-fmri/vini | SCR_017250 | 2026-02-15 09:21:17 | 0 | |||||||||
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IQ-TREE Resource Report Resource Website 500+ mentions |
IQ-TREE (RRID:SCR_017254) | software application, data processing software, data analysis software, software resource | Software tool as stochastic algorithm for estimating maximum likelihood phylogenies. Used for phylogenomic inference. | stochastic, algorithm, estimate, maximum, likelihood, phylogeny, phylogenomic, inference, data, dataset, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: University of Vienna; Vienna; Austria |
Austrian Science Fund ; University of Vienna |
PMID:25371430 | Free, Available for download, Freely available | biotools:ufboot2 | https://bio.tools/ufboot2/ | SCR_017254 | 2026-02-15 09:21:17 | 790 | ||||||
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Diffusion Toolkit Resource Report Resource Website 50+ mentions |
Diffusion Toolkit (RRID:SCR_017345) | DTK | software application, data processing software, data analysis software, software resource | Software as set of commandline tools with GUI frontend that performs data reconstruction and fiber tracking on diffusion MR images. It does preparation work for TrackVis. Software Package for diffusion imaging data processing and tractography. | data, reconstruction, fiber, tracking, diffusion, MR, image, processing, tractography |
is listed by: OMICtools is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard University; Cambridge; United States |
Restricted | https://cds.ismrm.org/ismrm-2007/files/03720.pdf https://www.nitrc.org/projects/trackvis/ |
SCR_017345 | 2026-02-15 09:22:01 | 55 | ||||||||
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PathwayNet Resource Report Resource Website 1+ mentions |
PathwayNet (RRID:SCR_017353) | data analysis service, software resource, data access protocol, web service, service resource, production service resource, analysis service resource | Web user interface for interaction predictions of human gene networks and integrative analysis of user data types that takes advantage of data from diverse tissue and cell-lineage origins. Predicts presence of functional association and interaction type among human genes or its protein products on whole genome scale. Used to analyze experimetnal gene in context of interaction networks. | Interface, interaction, predict, human, gene, network, integrative, analysis, user, data, tissue, cell, functional, protein, genome |
is listed by: OMICtools has parent organization: Princeton University; New Jersey; USA |
NIGMS R01 GM071966; NHGRI HG005998; NIGMS P50 GM071508 |
PMID:25431329 | Free, Freely available | SCR_017353 | 2026-02-15 09:22:03 | 7 | ||||||||
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TissueAtlas Resource Report Resource Website 10+ mentions |
TissueAtlas (RRID:SCR_017352) | database, software resource, data access protocol, web service, atlas, data or information resource | Human miRNA tissue atlas. Database showing distribution of miRNA expression across human tissues. | Human, miRNA, tissue, atlas, data, distribution, expression | has parent organization: Saarland University; Saarbrucken; Germany | Saarland University ; Germany ; Siemens Healthcare ; FP7 project BestAgeing |
PMID:26921406 | Free, Freely available | SCR_017352 | 2026-02-15 09:21:19 | 29 |
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