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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SHORE Resource Report Resource Website 100+ mentions |
SHORE (RRID:SCR_011863) | SHORE | software resource | A mapping and analysis pipeline for short read data produced on the Illumina platform. | is listed by: OMICtools | OMICS_01136 | SCR_011863 | 2026-02-14 02:02:28 | 157 | ||||||||||
|
ArrayMiner Resource Report Resource Website 1+ mentions |
ArrayMiner (RRID:SCR_011955) | ArrayMiner | software resource | A set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
OMICS_01570, biotools:arrayminer | https://bio.tools/arrayminer | SCR_011955 | 2026-02-14 02:02:31 | 2 | ||||||||
|
miRPlant Resource Report Resource Website 10+ mentions |
miRPlant (RRID:SCR_012105) | software resource | A user-friendly plant miRNA prediction tool. | applet, unix/linux, mac os x, windows, java, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:25117656 | GNU General Public License | OMICS_05325, biotools:mirplant | https://bio.tools/mirplant | SCR_012105 | 2026-02-14 02:02:36 | 14 | |||||||
|
PyPedal Resource Report Resource Website 1+ mentions |
PyPedal (RRID:SCR_012104) | software resource | A pedigree analysis software package that provides tools for error checking, mathematical analysis, report generation, pedigree simulation, and data visualization. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_05311 | SCR_012104 | 2026-02-14 02:02:18 | 2 | ||||||||||
|
Simulate PCR Resource Report Resource Website |
Simulate PCR (RRID:SCR_012106) | software resource | Software that can be run from the command line for high throughput applications which can calculate all products from large lists of primers and probes compared to a large sequence database such as nt. | standalone software, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25005023 | Free, Public | OMICS_05372 | SCR_012106 | 2026-02-14 02:02:10 | 0 | ||||||||
|
CONDEX Resource Report Resource Website |
CONDEX (RRID:SCR_012109) | software resource | Software that implements a HMM Model to detect copy number variants in exome sequence data. | standalone software, java |
is listed by: OMICtools has parent organization: Google Code |
GNU General Public License | OMICS_05442 | SCR_012109 | 2026-02-14 02:02:36 | 0 | |||||||||
|
SAT-Assembler Resource Report Resource Website 1+ mentions |
SAT-Assembler (RRID:SCR_012108) | software resource | A targeted gene assembly software program which aims to recover gene families of particular interest to biologists. | standalone software, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25122209 | Creative Commons License | OMICS_05397 | SCR_012108 | 2026-02-14 02:02:18 | 3 | ||||||||
|
ProteoCloud Resource Report Resource Website |
ProteoCloud (RRID:SCR_012075) | software resource | A Java-based proteomics cloud computing pipeline system for peptide and protein identifications. |
is listed by: OMICtools has parent organization: Google Code |
PMID:23305951 | Apache License | OMICS_04549 | SCR_012075 | 2026-02-14 02:02:35 | 0 | |||||||||
|
FingerID Resource Report Resource Website 10+ mentions |
FingerID (RRID:SCR_012077) | software resource | A metabolite identification software using tandem mass spectrometry and kernel methods. | standalone software, matlab, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22815355 | GNU General Public License | OMICS_04649 | SCR_012077 | 2026-02-14 02:02:34 | 18 | ||||||||
|
ChiBE Resource Report Resource Website 1+ mentions |
ChiBE (RRID:SCR_012110) | software resource | An editing and visualization software tool for pathway models represented by the BioPAX format, using SBGN Process Description Language, based on Chisio. | mac os x, unix/linux, windows, java |
is listed by: OMICtools has parent organization: Google Code |
PMID:25086704 | Free, Public | OMICS_05454 | SCR_012110 | Chisio BioPAX Editor | 2026-02-14 02:02:10 | 3 | |||||||
|
SlideSort-BPR Resource Report Resource Website |
SlideSort-BPR (RRID:SCR_012079) | software resource | Software using a reference-free method for detecting clusters of breakpoints from the chromosomal rearrangements. | standalone software, c++, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Google Code |
PMID:24876376 | GNU General Public License | biotools:slidesort-bpr, OMICS_04878 | https://bio.tools/slidesort-bpr | SCR_012079 | 2026-02-14 02:02:35 | 0 | |||||||
|
proTRAC Resource Report Resource Website 10+ mentions |
proTRAC (RRID:SCR_012078) | software resource | A software which detects and analyses piRNA clusters based on quantifiable deviations from a hypothetical uniform distribution regarding the decisive piRNA cluster characteristics. | standalone software, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22233380 | Creative Commons License | OMICS_04874 | SCR_012078 | probabilistic TRacking and Analysis of Clusters | 2026-02-14 02:02:18 | 26 | |||||||
|
MOABS Resource Report Resource Website 100+ mentions |
MOABS (RRID:SCR_012071) | software resource | Software providing a complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing. |
is listed by: OMICtools has parent organization: Google Code |
PMID:24565500 | Free, Public | OMICS_04480 | SCR_012071 | MOdel based Analysis of Bisulfite Sequencing data | 2026-02-14 02:02:35 | 242 | ||||||||
|
NetMODE Resource Report Resource Website 1+ mentions |
NetMODE (RRID:SCR_012085) | software resource | Fast motif detection algorithm for subgraph size no more than 6. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23272055 | OMICS_05019 | SCR_012085 | 2026-02-14 02:02:34 | 1 | |||||||||
|
FABIA Resource Report Resource Website 10+ mentions |
FABIA (RRID:SCR_012002) | FABIA | software resource | A model-based technique for biclustering that is clustering rows and columns simultaneously. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:20418340 | Free | OMICS_01797, biotools:fabia | https://bio.tools/fabia | SCR_012002 | Factor Analysis for Bicluster Acquisition | 2026-02-14 02:02:33 | 12 | |||||
|
APHL Resource Report Resource Website 10+ mentions |
APHL (RRID:SCR_012001) | APHL | nonprofit organization | Works to strengthen laboratories serving the public''s health in the US and globally. | is listed by: OMICtools | Wikidata: Q4810010, Crossref funder ID: 100008482, ISNI: 0000 0001 0029 6188, OMICS_01790, grid.422961.a | https://ror.org/04d0f7957 | SCR_012001 | Association of Public Health Laboratories | 2026-02-14 02:02:17 | 10 | ||||||||
|
SPINAL Resource Report Resource Website 50+ mentions |
SPINAL (RRID:SCR_012080) | software resource | Algorithm for the problem of globally aligning a pair of protein-protein interaction (PPI) networks. | standalone software, c++ |
is listed by: OMICtools has parent organization: Google Code |
PMID:23413436 | Free, Public | OMICS_04881 | SCR_012080 | 2026-02-14 02:02:09 | 73 | ||||||||
|
SketchEl Resource Report Resource Website |
SketchEl (RRID:SCR_012082) | software resource | An interactive chemical molecule sketching tool, and molecular spreadsheet data entry application. | applet, mac os x, unix/linux, windows, java, javascript |
is listed by: OMICtools has parent organization: SourceForge |
GNU General Public License | OMICS_04982 | SCR_012082 | 2026-02-14 02:02:18 | 0 | |||||||||
|
HopeMap Resource Report Resource Website |
HopeMap (RRID:SCR_012081) | software resource | A connected-components based fast algorithm for network alignment. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23710435 | OMICS_04896 | SCR_012081 | 2026-02-14 02:02:34 | 0 | |||||||||
|
MCDL Resource Report Resource Website 1+ mentions |
MCDL (RRID:SCR_012084) | software resource | A small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. | applet, mac os x, unix/linux, windows, java |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_05001 | SCR_012084 | 2026-02-14 02:02:09 | 2 |
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