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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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MEGASNPHUNTER Resource Report Resource Website 1+ mentions |
MEGASNPHUNTER (RRID:SCR_009287) | MEGASNPHUNTER | software application, software resource | Software application that takes case-control genotype data as input and produces a ranked list of multi-SNP interactions. In particular, the whole genome is first partitioned into multiple short subgenomes and a boosting tree classifier is built for each subgenomes based on multi-SNP interactions and then used to measure the importance of SNPs. The method keeps relatively more important SNPs from all subgenomes and let them compete with each other in the same way at the next level. The competition terminates when the number of selected SNPs is less than the size of a subgenome. (entry from Genetic Analysis Software) | gene, genetic, genomic, parkinson, software application | is listed by: Genetic Analysis Software | Parkinson's disease, Rheumatoid arthritis | nlx_154472 | SCR_009287 | 2026-02-15 09:20:00 | 3 | ||||||||
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MCQTL Resource Report Resource Website 10+ mentions |
MCQTL (RRID:SCR_009285) | MCQTL | software application, software resource | Software package to perform QTL mapping in multi-cross designs that allows the analysis of the usual populations derived from inbred lines and can link the families by assuming that the QTL locations are the same in all them. Moreover, a diallel modelling of the QTL genotypic effects is allowed in multiple related families. Obviously, the analysis of a single cross is also feasible. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, c++, unix, linux | is listed by: Genetic Analysis Software | nlx_154470 | SCR_009285 | Multi-Cross QTL mapping | 2026-02-15 09:20:10 | 10 | ||||||||
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MAPMAKER/QTL Resource Report Resource Website 10+ mentions |
MAPMAKER/QTL (RRID:SCR_009283) | MAPMAKER/QTL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, vms, ms-dos, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154464 | SCR_009283 | 2026-02-15 09:20:00 | 32 | ||||||||
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MDBLOCKS Resource Report Resource Website 1+ mentions |
MDBLOCKS (RRID:SCR_009280) | MDBLOCKS | software application, software resource | Software application using the mimimum description length model to delineate haplotype blocks (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154461 | SCR_009280 | Minimum Description length method for haplotype BLOCKS | 2026-02-15 09:19:41 | 1 | ||||||||
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RELTYPE Resource Report Resource Website |
RELTYPE (RRID:SCR_009359) | RELTYPE | software application, software resource | Software program for determining biological relatedness between individuals based on allele sharing at microsatellite loci (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154574 | SCR_009359 | 2026-02-15 09:20:07 | 0 | |||||||||
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RELCHECK Resource Report Resource Website 1+ mentions |
RELCHECK (RRID:SCR_009357) | RELCHECK | software application, software resource | Software program for verifying the relationships between all pairs of individuals in a linkage study, by use of (autosomal) genome scan data, with allowance for the presence of genotyping errors. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos, ms-windows, unix | is listed by: Genetic Analysis Software | nlx_154572 | SCR_009357 | 2026-02-15 09:19:42 | 1 | |||||||||
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RELPAIR Resource Report Resource Website 10+ mentions |
RELPAIR (RRID:SCR_009358) | RELPAIR | software application, software resource | Software program that infers the relationships of pairs of individuals based on genetic marker data, either within families or across an entire sample. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, ms-windows, (95), unix | is listed by: Genetic Analysis Software | nlx_154573 | SCR_009358 | 2026-02-15 09:20:11 | 14 | |||||||||
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RC-TDT Resource Report Resource Website 1+ mentions |
RC-TDT (RRID:SCR_009353) | RC-TDT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application using a family-based association method that allows testing for linkage in the presence of linkage disequilibrium between an autosomal marker and a disease even if there is only incomplete parental-marker information. Recently, Horvath et al. (2000) described a similar procedure (XRC-TDT) for X-linked markers. The distribution contains SAS macros that calculate the RC-TDT and XRC-TDT test statistics, as well as their respective exact P values. (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154568 | SCR_009353 | Reconstruction-Combined Transmission Disequilibrium Test | 2026-02-15 09:19:42 | 1 | |||||||
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QTL EXPRESS Resource Report Resource Website 10+ mentions |
QTL EXPRESS (RRID:SCR_009350) | QTL EXPRESS | software application, software resource | A web-based user-friendly package to map Quantitative Trait Loci in outbred populations. Population structures catered for are line crosses, halfsib families, nuclear families and sibpairs. Permutation tests to determine empirical significance levels and bootstrapping to estimate empirical confidence intervals of QTL locations are optional. Fixed effects/covariates can be fitted and models may include single or multiple QTL. Results are presented in tabular and graphical format. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154565 | SCR_009350 | 2026-02-15 09:20:11 | 13 | |||||||||
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QTL-ALL Resource Report Resource Website 1+ mentions |
QTL-ALL (RRID:SCR_009348) | QTL-ALL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software package designed to make as many as possible of the new statistics (e.g. score statistics) widely available. The software consists of a MEGA2-like interface for data analysis preparation and a library of R routines that computes linkage statistics. QTL-ALL reads in input data, creates re-formatted output data files, calls external IBD-generation software such as MERLIN or SIMWALK2, then computes statistics using our R library, and finally produces tables and plots of statistics and p-values. This entire sequence is highly automated, requiring minimal user-intervention. The initial release of the software computes a number of newer QTL-mapping statistics, including several score statistic variants, and can handle nuclear family data, including specialty designs such as discordant and concordant (affected) pairs. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154562 | SCR_009348 | QTL Analysis and Linkage Library | 2026-02-15 09:20:01 | 9 | |||||||
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QTL Cartographer Resource Report Resource Website 10+ mentions |
QTL Cartographer (RRID:SCR_009349) | QTL Cartographer | software application, software resource | Software program to map quantitative traits sing a map of molecular markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154564 | SCR_009349 | 2026-02-15 09:19:42 | 17 | |||||||||
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PSEUDOMARKER Resource Report Resource Website 10+ mentions |
PSEUDOMARKER (RRID:SCR_009345) | PSEUDOMARKER | software application, software resource | A linkage analysis software for joint linkage and/or linkage disequilibrium analysis. PSEUDOMARKER can analyze different data structures jointly such as cases-controls, trios, sib-pairs, sib-ships, and extended families. (entry from Genetic Analysis Software) | gene, genetic, genomic, c/c++, linux | is listed by: Genetic Analysis Software | nlx_154557 | SCR_009345 | 2026-02-15 09:20:11 | 14 | |||||||||
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PRT Resource Report Resource Website |
PRT (RRID:SCR_009340) | PRT | software application, software resource | Software application for partition of single generation into sibling groups (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154554 | SCR_009340 | Pedigree Reconstruction Tools | 2026-02-15 09:20:11 | 0 | ||||||||
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PSAT Resource Report Resource Website 10+ mentions |
PSAT (RRID:SCR_009341) | PSAT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154555 | SCR_009341 | Population Stratification Association Test | 2026-02-15 09:20:07 | 28 | ||||||||
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SELSIM Resource Report Resource Website 1+ mentions |
SELSIM (RRID:SCR_009378) | software application, software resource | Software program which can simulate population genetic data in which a single site has experienced natural selection. When designing methods which provide the necessary power to detect regions of the genome which have experience historical selective pressures it is important to consider which patterns of genetic diversity are indicative of particular forms of natural selection. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, ms-windows, (xp), linux | is listed by: Genetic Analysis Software | nlx_154613 | http://www.stats.ox.ac.uk/mathgen/software.html | SCR_009378 | SelSim | 2026-02-15 09:20:07 | 2 | ||||||||
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R/LUCA Resource Report Resource Website |
R/LUCA (RRID:SCR_009369) | R/LUCA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154591 | http://stat-db.stat.sfu.ca:8080/statgen/research/luca/ | SCR_009369 | Likelihood Under Covariate Assumptions | 2026-02-15 09:19:42 | 0 | |||||||
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R/GAP Resource Report Resource Website 1+ mentions |
R/GAP (RRID:SCR_009364) | R/GAP | software application, software resource | An integrated software package for genetic data analysis of both population and family data. Currently it contains functions for sample size calculations of both population-based and family-based designs, classic twin ACE/ADE/AE/CE models, probability of familial disease aggregation, kinship calculation, some statistics in linkage analysis, and association analysis involving one or more genetic markers including haplotype analysis with or without environmental covariates (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154583 | SCR_009364 | R/Genetic Analysis Package | 2026-02-15 09:20:07 | 1 | ||||||||
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RHMAP Resource Report Resource Website 1+ mentions |
RHMAP (RRID:SCR_009360) | RHMAP | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | nlx_154575 | SCR_009360 | Radiation Hybrid Map | 2026-02-15 09:20:01 | 3 | ||||||||
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PDT Resource Report Resource Website 1+ mentions |
PDT (RRID:SCR_009319) | PDT | software application, software resource | Software analysis program to evaluate evidence of linkage disequilibrium (LD) in general pedigree data. All family data may be used without nullifying the validity of the association test, even when there is more than one affected in a family. The PDT program performs both allele-specific and genotype-specific LD analysis of individual markers. Version 5.1 adds the ability to perform genotype-specific analysis over marker sets. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris | is listed by: Genetic Analysis Software | nlx_154513 | SCR_009319 | pedigree disequilibrium test | 2026-02-15 09:19:42 | 2 | ||||||||
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PDA Resource Report Resource Website |
PDA (RRID:SCR_009317) | PDA | software application, software resource | Software tool for analyses of pooled DNA data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154511 | SCR_009317 | Pooled DNA Analyzer | 2026-02-15 09:20:06 | 0 |
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