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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Connectir Resource Report Resource Website 1+ mentions |
Connectir (RRID:SCR_000863) | Connectir | data processing software, software application, software resource, image analysis software | An R-based package to conduct brain connectivity analyses with a focus on a novel approach to conducting Connectome-Wide Association Studies (CWAS) using functional connectivity. | console (text based), magnetic resonance, r, connectivity, brain, connectome-wide association study, functional connectivity | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155729 | http://www.nitrc.org/projects/connectir | SCR_000863 | 2026-02-16 09:45:21 | 1 | |||||||
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IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI Resource Report Resource Website 1+ mentions |
IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI (RRID:SCR_000539) | IMPACT | data or information resource, project portal, portal | Project focused on advancing knowledge of prognosis, trial design and treatment in Traumatic Brain Injury. IMPACT has developed and validated prognostic models for classification and characterization of TBI series, and participated in development of standardization of data collection in TBI studies. | traumatic brain injury, common data element, clinical research, treatment, head injury, data set, randomized controlled trial, one mind tbi, brain, clinical trial | is parent organization of: IMPACT Prognostic Calculator | Traumatic brain injury | NINDS NS 042691 | nlx_143883 | SCR_000539 | International Mission for Prognosis and Analysis of Clinical Trials in TBI, TBI-IMPACT | 2026-02-16 09:45:17 | 3 | ||||||
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HUDSEN Electronic Atlas of the Developing Human Brain Resource Report Resource Website 1+ mentions |
HUDSEN Electronic Atlas of the Developing Human Brain (RRID:SCR_002056) | EADHB, HUDSEN EADHB | data or information resource, video resource, atlas | Interactive digital atlas and movies comprising 3-D reconstructions at all stages of human development from Carnegie Stage 12 (CS12; ~26 days post conception (dpc)) to CS23 (~ 56 dpc) and anatomical annotations of the 3-D models linked to an anatomical database. The 3D models are generated using Optical Projection Tomography (OPT; Sharpe et al 2002). The digital atlas is also linked to a gene expression database that has been developed from the Edinburgh Mouse Atlas Project gene expression database (EMAGE). In the future, the HUDSEN EADHB aims to provide the wider scientific and medical communities with a dynamic tool for documenting and analyzing gene expression patterns and morphological changes in the developing human brain. | human development, carnegie stage, annotation, optical projection tomography, embryonic human, embryo, 3d, 3d model, brain, gene expression, anatomy, molecular neuroanatomy resource, developing |
is related to: EMAGE Gene Expression Database has parent organization: HUDSEN has parent organization: Newcastle University; Newcastle upon Tyne; United Kingdom |
NIMH R01 MH070370; NICHD HD39928-02 |
PMID:20979583 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-12494 | http://www.ncl.ac.uk/ihg/EADHB/ | SCR_002056 | Electronic Atlas of the Developing Human Brain | 2026-02-16 09:45:43 | 1 | ||||
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Tennenbaum Center for the Biology of Creativity Resource Report Resource Website |
Tennenbaum Center for the Biology of Creativity (RRID:SCR_000668) | data or information resource, organization portal, portal | The purpose of this center is to study the molecular, cellular, systems and cognitive mechanisms that result in cognitive enhancements and explain unusual levels of performance in gifted individuals, including extraordinary creativity. Additionally, by understating the mechanisms responsible for enhancements in performance we may be better suited to intervene and reverse disease states that result in cognitive deficits. One of the key topics addressed by the Center is the biological basis of cognitive enhancements, a topic that can be studied in human subjects and animal models. In the past much of the focus in the brain sciences has been on the study of brain mechanisms that degrade cognitive performance (for example, on mutations or other lesions that cause cognitive deficits). The Tennenbaum Center for the Biology of Creativity at UCLA enables an interdisciplinary team of leading scientists to advance knowledge about the biological bases of creativity. Starting with a pilot project program, a series of investigations was launched, spanning disciplines from basic molecular biology to cognitive neuroscience. Because the concept of creativity is multifaceted, initial efforts targeted refinement of the component processes necessary to generate novel, useful cognitive products. The identified core cognitive processes: 1.) Novelty Generation the ability to flexibly and adaptively generate products that are unique; 2.) Working Memory and Declarative Memory the ability to maintain, and then use relevant information to guide goal-directed performance, along with the capacity to store and retrieve this information; and 3.) Response Inhibition the ability to suppress habitual plans and substitute alternate actions in line with changing problem-solving demands. To study the basic mechanisms underlying these complex brain functions we use translational strategies. Starting from foundational studies in basic neuroscience, we forged an interdisciplinary strategy that permits the most advanced techniques for genetic manipulation and basic neurobiological research to be applied in close collaboration with human studies that converge on the same core cognitive processes. Our integrated research program aims to reveal the genetic architecture and fundamental brain mechanisms underlying creative cognition. The work holds enormous promise for both enhancing healthy cognitive performance and designing new treatments for diverse cognitive disorders. Sponsors: The Tennenbaum Center for the Biology of Creativity was inspired by the vision and generosity of Michael Tennenbaum. | generation, genetic, animal, biological, brain, brain science, cellular, cognitive, cognitive deficit, cognitive disorder, cognitive neuroscience, creativity, declarative memory, disease, habitual, human, inhibition, mechanism, memory, model, molecular, molecular biology, neurobiological, performance, response, working memory | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10497 | SCR_000668 | UCLA CBC | 2026-02-16 09:45:19 | 0 | |||||||||
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Center for Computational Biology at UCLA Resource Report Resource Website |
Center for Computational Biology at UCLA (RRID:SCR_000334) | CCB, UCLA CCB, USC CCB | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 31, 2022. Center focused on the development of computational biological atlases of different populations, subjects, modalities, and spatio-temporal scales with 3 types of resources: (1) Stand-alone computational software tools (image and volume processing, analysis, visualization, graphical workflow environments). (2) Infrastructure Resources (Databases, computational Grid, services). (3) Web-services (web-accessible resources for processing, validation and exploration of multimodal/multichannel data including clinical data, imaging data, genetics data and phenotypic data). The CCB develops novel mathematical, computational, and engineering approaches to map biological form and function in health and disease. CCB computational tools integrate neuroimaging, genetic, clinical, and other relevant data to enable the detailed exploration of distinct spatial and temporal biological characteristics. Generalizable mathematical approaches are developed and deployed using Grid computing to create practical biological atlases that describe spatiotemporal change in biological systems. The efforts of CCB make possible discovery-oriented science and the accumulation of new biological knowledge. The Center has been divided into cores organized as follows: - Core 1 is focused on mathematical and computational research. Core 2 is involved in the development of tools to be used by Core 3. Core 3 is composed of the driving biological projects; Mapping Genomic Function, Mapping Biological Structure, and Mapping Brain Phenotype. - Cores 4 - 7 provide the infrastructure for joint structure within the Center as well as the development of new approaches and procedures to augment the research and development of Cores 1-3. These cores are: (4)Infrastructure and Resources, (5) Education and Training, (6) Dissemination, and (7) Administration and Management. The main focus of the CCB is on the brain, and specifically on neuroimaging. This area has a long tradition of sophisticated mathematical and computational techniques. Nevertheless, new developments in related areas of mathematics and computational science have emerged in recent years, some from related application areas such as Computer Graphics, Computer Vision, and Image Processing, as well as from Computational Mathematics and the Computational Sciences. We are confident that many of these ideas can be applied beneficially to neuroimaging. | functional, genetic, biological system, brain, clinical, computational, computational mathematic, disease, health, image processing, physiological, population, structural, neuroimaging, computational neuroscience, imaging genomics, magnetic resonance, pet, spect |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: National Centers for Biomedical Computing has parent organization: Laboratory of Neuro Imaging |
NCRR U54 RR021813 | PMID:22081221 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10492 | http://ccb.loni.ucla.edu/ | http://www.nitrc.org/projects/ccb, http://cms.loni.ucla.edu/CCB/ | SCR_000334 | CCB at UCLA, Center for Computational Biology | 2026-02-16 09:45:14 | 0 | |||
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International Brain Research Organization Resource Report Resource Website 1+ mentions |
International Brain Research Organization (RRID:SCR_007406) | IBRO | funding resource, data or information resource, organization portal, portal | A central organization that develops, supports, co-ordinates and promotes scientific research in all fields concerning the brain; promotes international collaboration and interchange of scientific information on brain research throughout the world; and provides for and to assist in education and the dissemination of information relating to brain research by all available means. IBRO represents the interests of more than 50,000 neuroscientists around the globe. Over the years, IBRO has set up a number of program to stimulate international contacts in brain research. Symposia and workshops are sponsored on the basis of competitive applications. Under its Publications Programme, IBRO publishes the journal Neuroscience and the annual newsletter IBRO News. IBRO offers post-doctoral fellowships and travel grants to students from less-developed countries. It has run a Neuroscience Schools Programme, organized by the committees of IBROs six Regions, aimed at forming interactive networks among students and teachers during training courses in Africa, Asia, Central and Eastern Europe, Latin America, Western Europe, and the US and Canada. With just three schools in 1999, expansion has been rapid - in 2007 there were 22 schools around the world. | neuroscience, brain | nif-0000-00471 | SCR_007406 | l''Organisation internationale de recherche sur le cerveau | 2026-02-16 09:46:57 | 2 | |||||||||
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GenePaint P56 Mouse Atlas Resource Report Resource Website |
GenePaint P56 Mouse Atlas (RRID:SCR_002788) | GenePaint Map P56 | reference atlas, data or information resource, atlas | Abbreviated reference atlas for the P56 mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing is permitted between planes of sectioning thus allowing the most appropriate plane to be selected. Abbreviations are found in a list accessed by clicking the see abbreviation link at the bottom of each map. Alternatively, passing the cursor directly across the abbreviation on the map will result in the appearance of the appropriate term in the rider on top of the map panel. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). | gene, adult mouse, anatomical, anatomy, annotation, atlas, basal forebrain, brain, cerebellum, cortex, globus pallidus, hippocampus, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, p56, pons, region, septum, stained, striatum, thalamus, tract, ventral striatum, image, gene expression |
is related to: GenePaint E15 Atlas is related to: GenePaint P7 Atlas is related to: GenePaint P7 Atlas has parent organization: GenePaint |
nif-0000-24450 | SCR_002788 | GenePaint P56 Mouse Atlas, GenePaint Mouse Brain Map P56 | 2026-02-16 09:45:52 | 0 | ||||||||
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Allen Mouse Brain Reference Atlas Resource Report Resource Website 100+ mentions |
Allen Mouse Brain Reference Atlas (RRID:SCR_002978) | ABA, ARA, ABA Mouse Brain | reference atlas, data or information resource, atlas | Allen Mouse Brain Atlas includes full color, high resolution anatomic reference atlas accompanied by systematic, hierarchically organized taxonomy of mouse brain structures. Enables interactive online exploration of atlas and to provide deeper level of 3D annotation for informatics analysis and viewing in Brain Explorer 3D viewer. | 3D, map, gene, expression, data, adult, mouse, brain, interactive, image |
is used by: NIF Data Federation is used by: BICCN is related to: BrainStars is related to: PubAnatomy is related to: Integrated Brain Gene Expression is related to: Allen Brain Atlas API is related to: 3DBar is related to: aGEM is related to: CellTax vignette is related to: Blue Brain Cell Atlas is related to: Allen Mouse Brain Common Coordinate Framework is related to: SHARCQ is related to: Enhancer Trap Line Browser is related to: Linked Neuron Data has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas works with: MeshView works with: Brain Gene Expression Analysis toolbox works with: VisuAlign works with: MIRACL |
Free, Freely available | SCR_013286, nlx_21010, nif-0000-00508 | http://mouse.brain-map.org/atlas/index.html, http://mouse.brain-map.org/ | SCR_002978 | Allen Mouse Brain Reference Atlas, Allen Reference Atlases, ABA Adult Mouse Brain, ARA ontology | 2026-02-16 09:45:58 | 444 | ||||||
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DTI-TEMPLATE-RHESUS-MACAQUES Resource Report Resource Website 1+ mentions |
DTI-TEMPLATE-RHESUS-MACAQUES (RRID:SCR_002482) | DTI-TEMPLATE-RHESUS-MACAQUES | reference atlas, data or information resource, atlas | A population-specific DTI template for young adolescent Rhesus Macaque (Macaca mulatta) monkeys using 271 high-quality scans. Using such a large number of animals in generating a template allows it to account for variability in the species. Their DTI template is based on the largest number of animals ever used in generating a computational brain template. It is anticipated that their DTI template will help facilitate voxel-based and tract specific WM analyses in non-human primate species, which in turn may increase our understanding of brain function, development, and evolution. | magnetic resonance, dti, young, adolescent, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Wisconsin-Madison; Wisconsin; USA |
NIMH MH62015; NIMH MH084051; NIMH MH080826; NIMH MH46729; NIMH MH81884; NIMH MH018931; NIBIB R03-EB009321 |
PMID:21803162 | Free, Available for download, Freely available | nlx_155872 | SCR_002482 | 2026-02-16 09:45:48 | 3 | ||||||
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Allen Institute for Brain Science Transgenic Mouse Study Resource Report Resource Website 1+ mentions |
Allen Institute for Brain Science Transgenic Mouse Study (RRID:SCR_002999) | Allen Transgenic Study | data set, data or information resource, atlas | A comprehensive characterization of expression patterns of genetically-controlled markers or tool genes in the brains of transgenic mice generated by the Allen Institute as well as the broad scientific community. Providing standardized, detailed, anatomical profiling of transgene expression throughout the brain, this dataset is intended to reveal the potential of each transgenic mouse line and help researchers choose the appropriate tools for their studies. Transgenic mice are valuable tools to label selective neuronal or non-neuronal populations, modulate gene expression in these cells or manipulate activity of these cells for the study of neural circuits and brain function. The Allen Institute has launched a project to generate a variety of transgenic mouse lines, mainly using the Cre/lox system, to express fluorescent probes or neuronal activity manipulating tools in a variety of cell types in the brain. At the same time, utilizing Allen Institute's unique high-throughput capability, a pipeline is set up to characterize the ability in directing cell type specific expression in the brains of various transgenic mice generated by the Allen Institute as well as the broad scientific community. Through standardized, detailed, anatomical profiling of the transgene expression in the entire mouse brain, this dataset is intended to provide a comprehensive evaluation of the potential of each transgenic mouse line and help researchers choose the appropriate transgenic tools to study the function of different regions and/or cell types of the brain. This data release adds additional data to the existing set of new Cre-reporter lines generated at the Allen Institute that have stronger expression than other commonly used reporter lines are used to characterize approximately a dozen Cre-driver lines. The types of characterization data include digitized images (of sections sampling the entire brain) of colorimetric in situ hybridization (CISH), double fluorescent in situ hybridization (DFISH), native fluorescence of XFP (generic term for fluorescent proteins of different colors), and immunohistochemical (IHC) labeling of marker genes. | expression, gene expression, brain, brain function, cell, colorimetric, in situ hybridization, double fluorescent, image, immunohistochemical, marker genes, mouse, mouse line, native fluorescence of xfp, neural circuits, transgenic mice, molecular neuroanatomy resource |
is related to: JAX Cre Repository has parent organization: Allen Institute for Brain Science |
nif-0000-00512 | SCR_002999 | Transgenic Mouse Study | 2026-02-16 09:45:53 | 4 | ||||||||
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Rat Brain Atlas of Paxinos and Watson Resource Report Resource Website 10+ mentions |
Rat Brain Atlas of Paxinos and Watson (RRID:SCR_006369) | Rat Brain Atlas of Paxinos & Watson | reference atlas, data or information resource, atlas | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 27,2025. Compact 3rd edition of The Rat Brain Atlas of Paxinos & Watson published in 1997, it is the most widely used stereotaxic reference system for rat brain. The illustrations and nomenclature of the atlas have become standard tools used by almost all research neuroscientists who deal with anatomy, physiology, or function. It has been subsequently updated, with the 6th edition being the most recent. The 3rd edition is the most recent one available online for free. The program runs in Adobe Acrobat Reader. | rat, stereotaxic coordinate, brain, neuroanatomy | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152120 | SCR_006369 | Rat Brain Atlas - Paxinos & Watson, Rat Brain in Stereotaxic Coordinates | 2026-02-16 09:46:42 | 18 | ||||||||
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McConnell Brain Imaging Center MNI Macaque Atlas Resource Report Resource Website 1+ mentions |
McConnell Brain Imaging Center MNI Macaque Atlas (RRID:SCR_005265) | reference atlas, data or information resource, atlas | A reference atlas of standard macaque monkey magnetic resonance images. The template brain volume that offers a common stereotaxic reference frame to localize anatomical and functional information in an organized and reliable way for comparison across individual macaque monkeys and studies. We have used MRI volumes from a group of 25 normal adult macaque monkeys (18 Macaca fascicularis, 7 Macaca mulatta) to create the individual atlas. Thus, the atlas does not rely on the anatomy of a single subject, but instead depends on nonlinear normalization of numerous macaque brains mapped to an average template image that is faithful to the location of anatomical structures. Tools for registering a native MRI to the MNI macaque atlas can be found in the Software section. Viewing the atlas and associated volumes online requires Java browser support. Additionally, you may download the atlas and associated files in your chosen format. | macaque, brain, early adult, template, atlas application, minc, minc2, magnetic resonance, nifti, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: McConnell Brain Imaging Center |
PMID:21256229 | Free | nlx_144292 | http://www.nitrc.org/projects/mniatlas | SCR_005265 | MNI Macaque Atlas, BIC MNI Macaque Atlas | 2026-02-16 09:46:27 | 2 | ||||||
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UAB Comprehensive Neuroscience Center Resource Report Resource Website |
UAB Comprehensive Neuroscience Center (RRID:SCR_007195) | data or information resource, organization portal, portal | The overall mission of the Comprehensive Neuroscience Center (CNC) is to promote and support interdisciplinary neuroscience research, clinical care and education at UAB. Despite significant advances over the last 15 years in understanding many basic neurological processes, development of more effective treatments for neurological and psychiatric diseases have been identified as the largest and fastest growing unmet medical need in this country. The institutions that can most rapidly and creatively establish the necessary neuroscience initiatives to facilitate the translation of basic research discoveries into effective therapies will be positioned to lead neurological and psychiatric disease research into the future. The Center integrates a variety of disciplines, including neurology, psychiatry, neurobiology, neurosurgery, psychology, vision science, and biomedical engineering. Faculty from the Schools of Medicine, Optometry, Social and Behavioral Sciences, Dentistry, Engineering, Health Professions, and Public Health are affiliated with the Center. The need to address neuroscience research is great: one in three Americans are affected by nervous system diseases including brain and spinal cord injury, dementing illnesses, schizophrenia, depression, movement disorders, multiple sclerosis, and autism. The burden of these diseases has an estimated economic cost of 500 billion per year in the United States. Center Research: The CNC serves as a vital center for neuroscience research at UAB and oversees six thematic programs of investigation: neurodevelopment and neurogenetics, neurodegeneration and experimental therapeutics, neuroregeneration and plasticity, behavioral and cognitive health, glial biology in medicine, and neuroimaging. The CNC helps coordinate the efforts of multiple neuroscience related centers at UAB, such as the Center for Glial Biology in Medicine, the Evelyn F. McKnight Brain Institute, the Civitan International Research Center, and the Alzheimers Disease Research Center. By interacting directly with these centers and establishing coalitions of centers and neuroscience subdisciplines, the CNC aids the UAB neuroscience community in meeting the challenges of modern neuroscience investigation. The CNC builds on other recent advances in neuroscience at UAB, including an 8.6 million grant from the National Institutes of Health to establish the Alabama Neuroscience Blueprint Core Center Facility awarded in September 2006. The Neuroscience Blueprint establishes research infrastructure on campus that is shared by investigators from institutions across Alabama and the Southeast. UAB has also added dynamic new leadership in the neuroscience fields including the following new chairs: Ray L. Watts, MD, Neurology (from Emory University); David Sweatt, PhD, Neurobiology (from Baylor College of Medicine); and James Meador-Woodruff, MD, Psychiatry (from the University of Michigan). | core facility, neurology, psychiatry, neurobiology, neurosurgery, psychology, vision science, biomedical engineering, nervous system, diseases, brain, spinal cord, injury, dementing illnesses, schizophrenia, depression, movement disorders, multiple sclerosis, autism, neuroscience, neurogenetics, neuroimaging, alzheimer | has parent organization: University of Alabama; Alabama; USA | nif-0000-00652 | SCR_007195 | University Of Alabama at Birmingham, UAB Comprehensive Neuroscience Center, CNC | 2026-02-16 09:46:54 | 0 | |||||||||
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Virtual Atlas of the Honeybee Brain Resource Report Resource Website 1+ mentions |
Virtual Atlas of the Honeybee Brain (RRID:SCR_007133) | Virtual Atlas of the Honeybee Brain | reference atlas, data or information resource, atlas | Standard brain atlas of the honeybee presented as an interactive three-dimensional surface model with integrated neuron and neuronal tracts. The standard atlas was created as an average-shape atlas of 22 neuropils, calculated from 20 individual immunostained whole-mount bee brains. After correction for global size and positioning differences by repeatedly applying an intensity-based nonrigid registration algorithm, a sequence of average label images was created. The Honeybee, Apis mellifera has been studied extensively with respect to its sensory and neural capacities in navigation, communication, visual and olfactory learning and memory processing. The goal is to integrate the entirety of information into a Virtual Atlas of the Honeybee Brain. This common spatial reference map will potentiate the representation of structural and functional data obtained in different experiments and from different individuals. | anatomy, honeybee, brain, insect, insecta, normal, antennal lobe, olfactory | has parent organization: Free University of Berlin; Berlin; Germany | BMBF | PMID:16175557 | nif-0000-00089 | SCR_007133 | 2026-02-16 09:46:53 | 6 | |||||||
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NeuroSynth Resource Report Resource Website 1000+ mentions |
NeuroSynth (RRID:SCR_006798) | Neurosynth | data or information resource, database, source code, software resource | Platform for large-scale, automated synthesis of functional magnetic resonance imaging (fMRI) data extracted from published articles. It''s a website wrapped around a set of open-source Python and JavaScript packages. Neurosynth lets you run crude but useful analyses of fMRI data on a very large scale. You can: * Interactively visualize the results of over 3,000 term-based meta-analyses * Select specific locations in the human brain and view associated terms * Browse through the nearly 10,000 studies in the database Their ultimate goal is to enable dynamic real-time analysis, so that you''ll be able to select foci, tables, or entire studies for analysis and run a full-blown meta-analysis without leaving your browser. You''ll also be able to do things like upload entirely new images and obtain probabilistic estimates of the cognitive states most likely to be associated with the image. | activation foci, magnetic resonance imaging assay, brain, human, fmri, neuroimaging, python, image, functional neuroimaging, FASEB list |
is used by: NeuroVault is used by: NIF Data Federation is listed by: GitHub is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Brainspell has parent organization: University of Texas at Austin; Texas; USA |
NIMH R01MH096906 | PMID:21706013 | Neurosynth Automated Coordinate Extraction (ACE) tools under, Open unspecified license, Open Software License, v3, Http://www.nitrc.org/include/glossary.php#552, Software is, Free, Copyright and permission notice required | nlx_55906 | http://www.nitrc.org/projects/neurosynth https://github.com/tyarkoni/neurosynth |
SCR_006798 | Neurosynth.org | 2026-02-16 09:46:48 | 1174 | ||||
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McConnell Brain Imaging Center Resource Report Resource Website 100+ mentions |
McConnell Brain Imaging Center (RRID:SCR_008364) | BIC | data or information resource, organization portal, portal | Center dedicated to understanding and treatment of neurological diseases by creating and using imaging methods to study human nervous system. Dedicated to research imaging of human brain. Brain structure is imaged using anatomical Magnetic Resonance Imaging (aMRI) while brain physiology is imaged using Positron Emission Tomography (PET), Magnetic Resonance Spectroscopy (MRS), functional MRI (fMRI) and magnetoencephalography (MEG). BIC maintains linkages with clinical, clinical research and basic research communities within Montreal Neurological Institute (MNI), McGill University and has collaborations across Quebec, Canada, USA and internationally. | emission, engineering, environment, fmri, functional mri, 3-dimensional, amri, anatomical, biomedical, brain, chemistry, clinical, computational, computer science, disease, disorder, human, imaging, magnetic, magnetoencephalography, medical, mri, mrs, nervous system, neurological, neurology, neuroscience, neurosurgery, pet, physics, physiology, positron, psychiatric, psychology, research, resonance, scanner, software, spectroscopy, spectrum, technology, tomography, treatment, neuroimaging, meg, atlas, database, data visualization software, data analysis software, data processing software |
is related to: MINC/Atlases has parent organization: McGill University; Montreal; Canada is parent organization of: MINC Example files is parent organization of: MINC is parent organization of: MNI N3 is parent organization of: McConnell Brain Imaging Center MNI Macaque Atlas is parent organization of: McConnell Brain Imaging Center MNI Rhesus Macaque Atlas is parent organization of: McConnell Brain Imaging Center MNI Cynomolgus Macaque Atlas is parent organization of: NIHPD Objective 1 atlases (4.5 - 18.5y) is parent organization of: NIHPD Objective 2 atlases (birth - 4.5 years) is parent organization of: ICBM 152 Nonlinear atlases version 2009 |
McConnell Family Foundation | nif-0000-25551 | https://www.mcgill.ca/bic/resources/brain-atlases/ovine-brain-atlas https://www.mcgill.ca/bic/resources/brain-atlases/human https://www.mcgill.ca/bic/resources/brain-atlases/non-human-primate |
SCR_008364 | McConnell Brain Imaging Center, McConnell Brain Imaging Centre, BIC | 2026-02-16 09:47:10 | 129 | ||||||
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Brainvox Resource Report Resource Website 1+ mentions |
Brainvox (RRID:SCR_009448) | data processing software, software application, software resource, image analysis software | An interactive 3D rendering and neuroanatomical analysis package developed for analyzing focal brain lesions and functional brain imaging data (Damasio and Frank, 1991; Frank, Damasio and Grabowski, 1997). | magnetic resonance, neuroanatomical analysis, software package, 3d, interactive, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: INCF Software Center |
PMID:9038281 | Available for download | nlx_155592 | SCR_009448 | 2026-02-16 09:47:24 | 1 | ||||||||
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McConnell Brain Imaging Center MNI Cynomolgus Macaque Atlas Resource Report Resource Website |
McConnell Brain Imaging Center MNI Cynomolgus Macaque Atlas (RRID:SCR_008793) | MNI Cynomolgus Macaque Atlas | reference atlas, data or information resource, atlas | A reference atlas of cynomolgus macaque monkey magnetic resonance images. The template brain volume that offers a common stereotaxic reference frame to localize anatomical and functional information in an organized and reliable way for comparison across individual cynomolgus monkeys and studies. We have used MRI volumes from a group of 18 normal adult cynomulgus monkeys (Macaca fascicularis) to create the individual atlas. Thus, the atlas does not rely on the anatomy of a single subject, but instead depends on nonlinear normalization of numerous cynomolgus monkey brains mapped to an average template image that is faithful to the location of anatomical structures. Tools for registering a native MRI to the cynomolgus macaque atlas can be found in the Software section. Viewing the atlas and associated volumes online requires Java browser support. Additionally, you may download the atlas and associated files in your chosen format. | long-tailed macaque, brain, early adult, mri, neuroanatomy | has parent organization: McConnell Brain Imaging Center | Normal | PMID:21256229 | nlx_144294 | SCR_008793 | BIC MNI Cynomolgus Macaque Atlas | 2026-02-16 09:47:16 | 0 | ||||||
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NIHPD Objective 2 atlases (birth - 4.5 years) Resource Report Resource Website 1+ mentions |
NIHPD Objective 2 atlases (birth - 4.5 years) (RRID:SCR_008795) | NIHPD Objective 2 atlases (birth - 4.5 years) | reference atlas, data or information resource, atlas | An unbiased magnetic resonance imaging template brain volume for pediatric data from birth to 4.5y age range. These volumes were created using 317 scans from 108 children enrolled in the NIH-funded MRI study of normal brain development (Almli et al., 2007, Evans and Group 2006). Templates are constructed for different age ranges. Each age range includes an average T1w, T2w, PDw maps normalized between 0 and 100. Also each age range includes a binary brain mask. Tools for using these atlases can be found in the Software section. | pediatric, child, mri, young human, brain, template | has parent organization: McConnell Brain Imaging Center | Aging | nlx_144296 | SCR_008795 | McConnell Brain Imaging Center NIHPD Objective 2 atlases (birth - 4.5 years), BIC NIHPD Objective 2 atlases (birth - 4.5 years) | 2026-02-16 09:47:16 | 4 | |||||||
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McConnell Brain Imaging Center MNI Rhesus Macaque Atlas Resource Report Resource Website 1+ mentions |
McConnell Brain Imaging Center MNI Rhesus Macaque Atlas (RRID:SCR_008790) | MNI Rhesus Macaque Atlas | reference atlas, data or information resource, atlas | A reference atlas of rhesus macaque monkey magnetic resonance images that offers a common stereotaxic reference frame. The atlas can be used to localize anatomical and functional information in an organized and reliable way for comparison across individual rhesus monkeys and studies. We have used MRI volumes from a group of 7 normal adult rhesus monkeys (Macaca mulatta) to create the individual atlas. Thus, the atlas does not rely on the anatomy of a single subject, but instead depends on nonlinear normalization of numerous rhesus monkey brains mapped to an average template image that is faithful to the location of anatomical structures. Tools for registering a native MRI to the rhesus macaque atlas can be found in the Software section. Viewing the atlas and associated volumes online requires Java browser support. Additionally, you may download the atlas and associated files in your chosen format. | rhesus monkey, brain, early adult | has parent organization: McConnell Brain Imaging Center | PMID:21256229 | nlx_144293 | SCR_008790 | BIC MNI Rhesus Macaque Atlas | 2026-02-16 09:47:16 | 1 |
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