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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PipMaker and MultiPipMaker Resource Report Resource Website 50+ mentions |
PipMaker and MultiPipMaker (RRID:SCR_011806) | PipMaker and MultiPipMaker | software resource | PipMaker computes alignments of similar regions in two DNA sequences. Moreover, MultiPipMaker can be requested to compute a true multiple alignment of the input sequences and return a nucleotide-level view of the results. |
is listed by: OMICtools has parent organization: Pennsylvania State University |
OMICS_00944 | SCR_011806 | 2026-02-14 02:02:14 | 78 | ||||||||||
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SynBrowse Resource Report Resource Website 1+ mentions |
SynBrowse (RRID:SCR_011807) | SynBrowse | software resource | A generic sequence comparison tool for visualizing genome alignments both within and between species. | is listed by: OMICtools | OMICS_00946 | SCR_011807 | Synteny Browser | 2026-02-14 02:02:28 | 2 | |||||||||
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VINNOVA Resource Report Resource Website 1+ mentions |
VINNOVA (RRID:SCR_011765) | VINNOVA | institution | Swedish agency whose mission is to promote sustainable growth by improving the conditions for innovation, as well as funding needs-driven research. They promote collaborations between companies, universities, research institutes and the public sector by stimulating a greater use of research, by making long-term investment in strong research and innovation environments and by developing catalytic meeting places. Their activities also focus on strengthening international cooperation. | Wikidata: Q4355568, ISNI: 0000 0001 2237 0481, nlx_158538, grid.453022.2, Crossref funder ID: 501100001858 | https://ror.org/01kd5m353 | SCR_011765 | VINNOVA Sweden''s Innovation Agency | 2026-02-14 02:02:04 | 6 | |||||||||
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Virginia-Maryland Regional College of Veterinary Medicine; Virginia; USA Resource Report Resource Website 1+ mentions |
Virginia-Maryland Regional College of Veterinary Medicine; Virginia; USA (RRID:SCR_011766) | VA-MD College of Veterinary Medicine | university | State supported college of two states, Virginia and Maryland, filling the need for veterinary medicine education in both states. Students from both states are considered "in-state" students for admissions purposes. |
has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA has parent organization: University of Maryland; Maryland; USA |
grid.470073.7, nlx_157962, ISNI:0000 0001 2178 7701, Wikidata:Q7934736 | https://ror.org/010prmy50 | SCR_011766 | Virginia-Maryland Regional College of Veterinary Medicine | 2026-02-14 02:02:26 | 1 | ||||||||
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Vrije Universiteit Brussel; Brussels; Belgium Resource Report Resource Website |
Vrije Universiteit Brussel; Brussels; Belgium (RRID:SCR_011769) | VUB | university | Dutch and English speaking research university located in Brussels, Belgium. It has four campuses: Brussels Humanities, Science and Engineering Campus, Brussels Health Campus, Brussels Technology Campus and Brussels Photonics Campus. |
is related to: IMIDIA is related to: Beta Cell Biology Consortium is parent organization of: In-Vivo Cellular and Molecular Imaging Center, Brussels is parent organization of: SABmark |
Crossref funder ID:501100004418, grid.8767.e, ISNI:0000 0001 2290 8069, nlx_96414, Wikidata:Q612665 | https://ror.org/006e5kg04 | SCR_011769 | Vrije Universiteit Brussel | 2026-02-14 02:02:27 | 0 | ||||||||
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VU University; Amsterdam; Netherlands Resource Report Resource Website |
VU University; Amsterdam; Netherlands (RRID:SCR_011770) | VU | university | VU University; Amsterdam; Netherlands |
is related to: European Lead Factory is related to: MIP-DILI is related to: Open PHACTS is parent organization of: OpenSesame is parent organization of: EDAR study: biomarkers for Alzheimer's disease is parent organization of: Neurophysiological Biomarker Toolbox is parent organization of: ShrinkSeq is parent organization of: Git2PROV is parent organization of: W3C Provenance Working Group |
Crossref funder ID:501100001833, nlx_143738, grid.12380.38, Wikidata:Q1065414, ISNI:0000 0004 1754 9227 | https://ror.org/008xxew50 | SCR_011770 | Free University Amsterdam, Vrije Universiteit, VU University Amsterdam, Free University, VU Amsterdam, Vrije Universiteit Amsterdam | 2026-02-14 02:02:04 | 0 | ||||||||
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Walter and Eliza Hall Institute of Medical Research; Victoria; Australia Resource Report Resource Website 1+ mentions |
Walter and Eliza Hall Institute of Medical Research; Victoria; Australia (RRID:SCR_011773) | WEHI | institution | Medical research institute in Australia that researches and develops treatments for cancer, infectious diseases and chronic inflammatory diseases. |
is parent organization of: affylmGUI is parent organization of: Socrates is parent organization of: GOstat is parent organization of: LINKDATAGEN |
Wikidata: Q7966487, nlx_157660, grid.1042.7 | https://ror.org/01b6kha49 | SCR_011773 | Walter and Eliza Hall Institute of Medical Research, Walter and Eliza Hall Institute | 2026-02-14 02:02:14 | 9 | ||||||||
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University of South Carolina; South Carolina; USA Resource Report Resource Website 1+ mentions |
University of South Carolina; South Carolina; USA (RRID:SCR_011699) | UofSC, U of SC | university | Public research university in Columbia, South Carolina. It has seven satellite campuses throughout the state. | university, public, South Carolina |
is parent organization of: Zebrafish Information Server is parent organization of: Neuroanatomy Atlas is parent organization of: MRIcron is parent organization of: Peromyscus Genetic Stock Center is parent organization of: South Carolina Biorepository System is parent organization of: University of South Carolina School of Medicine; South Carolina; USA is parent organization of: Clinical Toolbox for SPM is parent organization of: dcm2nii is parent organization of: metagear is parent organization of: University of South Carolina at Columbia College of Pharmacy Microarray Core Facility is parent organization of: USC Patient Engagement Studio is parent organization of: University of South Carolina Mouse Experimentation and Germ-Free Core Facility is parent organization of: University of South Carolina X-Ray Photoelectron Spectroscopy Core Facility is parent organization of: University of South Carolina Functional Genomics Core Facility is parent organization of: University of South Carolina Center for Elemental Mass Spectrometry Core Facility is parent organization of: University of South Carolina Mass Spectrometry Core Facility is parent organization of: University of South Carolina Nuclear Magnetic Resonance Core Facility is parent organization of: University of South Carolina College of Pharmacy Microscopy and Flow Cytometry Core Facility is parent organization of: University of South Carolina Research Computing Core Facility is parent organization of: University of South Carolina Instrumentation Resource Core Facility |
ISNI:0000 0004 4658 9818, Wikidata:Q1537299, grid.411021.7, nlx_99437 | https://ror.org/03rtgjq94 | SCR_011699 | University of South Carolina | 2026-02-14 02:02:24 | 2 | |||||||
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University of Victoria; British Columbia; Canada Resource Report Resource Website |
University of Victoria; British Columbia; Canada (RRID:SCR_011740) | UVic | university | Public research university in Greater Victoria, British Columbia, Canada, located in the municipalities of Oak Bay and Saanich. The university traces its roots to Victoria College, the first post-secondary institution established in the province. |
is related to: Federated Research Data Repository is parent organization of: Bio-Mixer is parent organization of: VBRC is parent organization of: Poxvirus Bioinformatics Resource Center is parent organization of: University of Victoria Genome BC Proteomics Centre Core Facility is parent organization of: University of Victoria Biology Electron Microscopy Laboratory Core Facility |
grid.143640.4, nlx_48413, ISNI:0000 0004 1936 9465, Crossref funder ID:100008997, Wikidata:Q1458113 | https://ror.org/04s5mat29 | SCR_011740 | University of Victoria, uVictoria | 2026-02-14 02:02:04 | 0 | ||||||||
|
University of Washington; Seattle; USA Resource Report Resource Website 1+ mentions |
University of Washington; Seattle; USA (RRID:SCR_011749) | UW | university | University of Washington is public research university in Seattle, Washington. Has university campuses in Seattle, Tacoma and Bothell, academic medical center and professional and continuing education programs. | public, research, university, campus, medical, center |
uses: ReadCube uses: Scizzle is affiliated with: Diabetes Research Centers is related to: Kidney Health Initiative is related to: Alzheimers Disease Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is related to: nbdocker is related to: Trail Technical Report Archive is related to: Urinary Stone Disease Research Network is related to: Seattle Alzheimer Disease Brain Cell Atlas is parent organization of: UW Department of Biochemistry is parent organization of: University of Washington Nath Research Group is parent organization of: CorQ is parent organization of: Maitreya Dunham's Lab is parent organization of: National ESCA and Surface Analysis Center for Biomedical Problems is parent organization of: Neurological Disorder Resources is parent organization of: BEAGLE is parent organization of: PolyPhred is parent organization of: Aging Genes and Interventions Database is parent organization of: Washington National Primate Research Center is parent organization of: Macaque.org is parent organization of: Primate Resource Referral Service is parent organization of: COnsensus-DEgenerate Hybride Oligonucleotide Primers is parent organization of: MindSeer is parent organization of: BrainInfo is parent organization of: FMA is parent organization of: Solstice is parent organization of: Foldit is parent organization of: Segway - a way to segment the genome is parent organization of: svmvia is parent organization of: qvality - Nonparametric estimation of posterior error probabilities is parent organization of: Charge Czar: Peptide charge state determination for low-resolution tandem mass spectra is parent organization of: BiblioSpec is parent organization of: Segtools is parent organization of: Genomedata is parent organization of: Language Map Experiment Management System is parent organization of: Philius is parent organization of: Patient-Reported Outcomes Measurement Information System is parent organization of: hyfi: software suite for binding site search is parent organization of: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets is parent organization of: Consed is parent organization of: PHYLIP is parent organization of: Metabolism and Transport Drug Interaction Database is parent organization of: SVM-fold: Protein Fold Prediction is parent organization of: MORGAN is parent organization of: Digital Anatomist Interactive Atlases Project is parent organization of: Rankprop - Protein Ranking by Network Propagation is parent organization of: Noble Research Lab is parent organization of: A statistical framework for genomic data fusion is parent organization of: National Alzheimer's Coordinating Center is parent organization of: NSR Physiome Project is parent organization of: University of Washington Seattle WA. Pharmacology is parent organization of: Decoys-R-Us is parent organization of: MPIM - Mitochondrial Protein Import Machinery is parent organization of: Yeast Resource Center is parent organization of: Foundational Model Explorer is parent organization of: Alcohol and Drug Abuse Institute, University of Washington is parent organization of: Eric H. Chundlers Links is parent organization of: UW Genome Sciences is parent organization of: LAMHDI: The Initiative to Link Animal Models to Human DIsease is parent organization of: University of Washington Alzheimers Disease Research Center is parent organization of: Sageweb is parent organization of: Laboratory of Phil Green at Univeristy of Washington is parent organization of: Genome Institue at Washington University is parent organization of: Crux tandem mass spectrometry analysis software is parent organization of: HMMSeg is parent organization of: GeneTests is parent organization of: Phylogeny Programs is parent organization of: NHLBI Grand Opportunity Exome Sequencing Project is parent organization of: NHLBI Exome Sequencing Project (ESP) is parent organization of: Francisella tularensis Genome Research is parent organization of: Alcohol and Drug Abuse Institute (ADAI) Library: Alcohol, Drugs and Tobacco Web Links is parent organization of: L2L Microarray Analysis Tool is parent organization of: CELL- PREVEN Project is parent organization of: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer is parent organization of: MIPgen is parent organization of: i2b2 Cross-Institutional Clinical Translational Research project is parent organization of: ACTTION is parent organization of: GeneReviews is parent organization of: Aging Dementia and Traumatic Brain Injury Study is parent organization of: iModel is parent organization of: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility is parent organization of: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core is parent organization of: University of Washington Diabetes Research Center Cell Function Analysis Core Facility is parent organization of: University of Washington Diabetes Research Center Human Studies Core Facility is parent organization of: University of Washington Diabetes Research Center is parent organization of: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core is parent organization of: University of Washington Diabetes Research Center Administrative Core is parent organization of: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core is parent organization of: University of Washington Nutrition and Obesity Research Center is parent organization of: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core is parent organization of: University of Washington Nutrition and Obesity Research Center Analytic Core is parent organization of: University of Washington Nutrition and Obesity Research Center Energy Balance Core is parent organization of: Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core is parent organization of: Cystic Fibrosis Center - University of Washington Host Response Core is parent organization of: University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program is parent organization of: Cystic Fibrosis Center - University of Washington Microbiology Core is parent organization of: Cystic Fibrosis Center - University of Washington Clinical Core is parent organization of: Cystic Fibrosis Center - University of Washington is parent organization of: Science Dynamics is parent organization of: Shannon is parent organization of: Skyline is parent organization of: PanoramaWeb is parent organization of: SBFSEM-tools is parent organization of: TopHat is parent organization of: Combined Annotation Dependent Depletion is parent organization of: SuperSegger is parent organization of: Monocle3 is parent organization of: Robetta is parent organization of: Mozak is parent organization of: Protein Cross-Linking Database is parent organization of: Kojak is parent organization of: Simple Behavior Analysis project is parent organization of: ACRoBaT is parent organization of: University of Washington I-LABS MEG Brain Imaging Center Core Facility is parent organization of: University of Washington Transgenic Resources Program Core Facility is parent organization of: University of Washington Mouse CRISPR Core Facility is parent organization of: University of Washington Translational BioImaging Core Facility is parent organization of: University of Washington Northwest Metabolomics Research Center Core Facility |
Wikidata:Q219563, nlx_67476, ISNI:122986657, Crossref funder ID:100007812, grid.34477.33 | https://ror.org/00cvxb145 | SCR_011749 | The University of Washington, University of Washington | 2026-02-14 02:02:14 | 9 | |||||||
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University of Virginia; Virginia; USA Resource Report Resource Website 1+ mentions |
University of Virginia; Virginia; USA (RRID:SCR_011743) | UVa, UVA | university | The university of Virginia opened in 1819. | undergraduate, graduate, master's, doctoral, phD, institution, university |
is related to: Alzheimers Disease Genetics Consortium is related to: Cooperative Human Tissue Network is parent organization of: University of Virginia School of Medicine; Virginia; USA is parent organization of: UVa Genomics Core Facility is parent organization of: University of Virginia Labs and Facilities is parent organization of: HEM is parent organization of: SAMBLASTER is parent organization of: SpeedSeq is parent organization of: LUMPY is parent organization of: GEOSS is parent organization of: Hydra is parent organization of: University of Virginia Bioinformatics Core is parent organization of: Evidence Graph Ontology is parent organization of: University of Virginia School of Medicine Research and Clinical Trials Analytics Core Facility |
Wikidata:Q213439, grid.27755.32, Crossref funder ID:100008457, ISNI:0000 0000 9136 933X, nlx_57553 | https://ror.org/0153tk833 | SCR_011743 | University of Virginia | 2026-02-14 02:02:25 | 3 | |||||||
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University of Wales; Wales; United Kingdom Resource Report Resource Website |
University of Wales; Wales; United Kingdom (RRID:SCR_011746) | university | Confederal university based in Cardiff, Wales. Founded by Royal Charter in 1893 as a federal university with three constituent colleges – Aberystwyth, Bangor and Cardiff – the university was the first and oldest university in Wales, one of the four countries in the United Kingdom. | Wikidata:Q1072029, grid.8155.9, nlx_94047 | https://ror.org/01se4f844 | SCR_011746 | 2026-02-14 02:02:26 | 0 | |||||||||||
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University of Texas at Arlington; Texas; USA Resource Report Resource Website |
University of Texas at Arlington; Texas; USA (RRID:SCR_011716) | UT Arlington | university | Public research university in Arlington, Texas, midway between Dallas and Fort Worth. |
uses: Experiment is parent organization of: UT Arlington Genomics Core |
ISNI:0000 0001 2181 9515, nlx_153962, Crossref funder ID:100009497, Wikidata:Q1230739, grid.267315.4 | https://ror.org/019kgqr73 | SCR_011716 | University of Texas Arlington, University of Texas at Arlington | 2026-02-14 02:02:14 | 0 | ||||||||
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ConDeTri Resource Report Resource Website 50+ mentions |
ConDeTri (RRID:SCR_011838) | ConDeTri | software resource | Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data. | Solexa sequencing data, Illumina data, data read trimming, read trimmer, sequencing data, |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:22039460 | Free, Available for download, Freely available | OMICS_01085, biotools:condetri | https://bio.tools/condetri https://sources.debian.org/src/condetri/ https://github.com/linneas/condetri/ |
SCR_011838 | 2026-02-14 02:02:28 | 66 | ||||||
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University of Texas at El Paso Resource Report Resource Website |
University of Texas at El Paso (RRID:SCR_011718) | UTEP | university | UTEP officially opened in the fall of 1914 and is the second oldest institution in The University of Texas System. | undergraduate, graduate, master's, doctoral, phD, institution, university |
has parent organization: University of Texas System; Texas; USA is parent organization of: UTEP BSL 3 Laboratory is parent organization of: University of Texas El Paso Analytical Cytology Core Facility is parent organization of: University of Texas El Paso Bioinformatics Computing Laboratory is parent organization of: UTEP Biomolecule Analysis Core Facility is parent organization of: UTEP Cell Culture and High Throughput Screening Core Facility is parent organization of: UTEP DNA Analysis Core Facility is parent organization of: UTEP Statistical Consulting Laboratory |
nlx_156106, Wikidata:Q2093110, ISNI:0000 0001 0668 0420, grid.267324.6 | https://ror.org/04d5vba33 | SCR_011718 | University of Texas at El Paso | 2026-02-14 02:02:04 | 0 | |||||||
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Quake Resource Report Resource Website 50+ mentions |
Quake (RRID:SCR_011839) | Quake | software resource | A software package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads. |
is listed by: OMICtools has parent organization: University of Maryland; Maryland; USA |
OMICS_01106 | SCR_011839 | 2026-02-14 02:02:15 | 80 | ||||||||||
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University of Texas at San Antonio; Texas; USA Resource Report Resource Website 1+ mentions |
University of Texas at San Antonio; Texas; USA (RRID:SCR_011719) | UTSA | university | Public research university in San Antonio, Texas. |
is parent organization of: UTSA Engineering Core is parent organization of: GENESIS Neural Database and Modelers Workspace is parent organization of: Neuroscientists Talk Shop is parent organization of: General Neural Simulation System is parent organization of: GEneral NEural SImulation System: The Neurospaces Project is parent organization of: University of Texas at San Antonio Laboratory of Professor Brenda Claiborne is parent organization of: Computer-Assisted Information Retrieval Service System for Music is parent organization of: EEGVIS is parent organization of: UTSA Biophysics Facility is parent organization of: UTSA Cellular and Tissue Engineering Laboratory is parent organization of: UTSA Computational Biology Initiative is parent organization of: UTSA Kleberg Advanced Microscopy Laboratory is parent organization of: University of Texas San Antonio Cell Analysis Core Facility is parent organization of: UTSA RCMI Computational Systems Biology Core is parent organization of: UTSA RCMI Nanotechnology and Human Health Core is parent organization of: University of Texas San Antonio Mass Spectrometry and Proteomics Core Facility is parent organization of: UTSA SNRP Image Analysis Core is parent organization of: UTSA SNRP Neurostatistics Core is parent organization of: UTSA X-ray Crystallography Laboratory is parent organization of: BCmicrO is parent organization of: UTSA RCMI Proteomics and Protein Biomarkers Cores is parent organization of: University of Texas at San Antonio Labs and Facilities is parent organization of: ExomePeak is parent organization of: NeuroManager is parent organization of: University of Texas at San Antonio Stem Cell Core Facility |
Wikidata:Q183170, grid.215352.2, ISNI:121845633, Crossref funder ID:100008634, nlx_67879 | https://ror.org/01kd65564 | SCR_011719 | UTSA | 2026-02-14 02:02:25 | 1 | ||||||||
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SBEAMS Resource Report Resource Website 1+ mentions |
SBEAMS (RRID:SCR_011830) | SBEAMS | software resource | Software providing a framework for collecting, storing, and accessing data produced by a wide variety of experiments. | proteomics, microarray | is listed by: OMICtools | PMID:16756676 | OMICS_01011 | SCR_011830 | Systems Biology Experiment Analysis Management System | 2026-02-14 02:02:27 | 9 | |||||||
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Circos Resource Report Resource Website 5000+ mentions |
Circos (RRID:SCR_011798) | Circos | software resource | A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: JupiterPlot |
DOI:10.1101/gr.092759.109 | biotools:circos, OMICS_00932 | https://bio.tools/circos https://sources.debian.org/src/circos/ |
SCR_011798 | 2026-02-14 02:02:14 | 5084 | |||||||
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Babraham Sierra Resource Report Resource Website 1+ mentions |
Babraham Sierra (RRID:SCR_011831) | software resource | Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users. | LIMS, Laboratory Information Management System, track samples, distribute results within small sequencing facility, track samples within facility and return sequencing, mapping and QC results, | has parent organization: Babraham Institute | GNU General Public License, v3 or later | OMICS_01014 | SCR_011831 | Sierra | 2026-02-14 02:02:15 | 6 |
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