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http://www.bios.unc.edu/~lin/software/tagIMPUTE/
A command-line program for the imputation of untyped SNPs. tagIMPUTE is based on a few flanking SNPs that can optimally predict the SNP under imputation. (entry from Genetic Analysis Software)
Proper citation: TAGIMPUTE (RRID:SCR_013338) Copy
http://www.dynacom.co.jp/u-tokyo.ac.jp/snphitlink/
Software program providing a useful pipeline to directly connect SNP data and linkage analysis program. SNP HiTLink currently supports the data from SNP chips provided by Affymetrix (Mapping 100k/500k array set, Genome-Wide Human SNP array 5.0/6.0) and Illumina (recently supported), carrying out typical linkage analysis programs of MLINK (FASTLINK/ LINKAGE package), Superlink, Merlin and Allegro. (entry from Genetic Analysis Software)
Proper citation: SNP HITLINK (RRID:SCR_013340) Copy
http://software.bfh-inst2.de/download3.html
Software application (entry from Genetic Analysis Software)
Proper citation: SGS (RRID:SCR_013460) Copy
http://www.stat.washington.edu/thompson/Genepi/Mcleeps.shtml
Software application (entry from Genetic Analysis Software)
Proper citation: MCLEEPS (RRID:SCR_013062) Copy
http://www.helsinki.fi/~tsjuntun/autoscan/
A helper program to automate the tedious process of the creation of input files from genotype data of genome-wide scans (entry from Genetic Analysis Software)
Proper citation: AUTOSCAN (RRID:SCR_013510) Copy
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