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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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AutoStereota Resource Report Resource Website 1+ mentions |
AutoStereota (RRID:SCR_022330) | data or information resource, portal, project portal, instrument resource | Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. | OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2018.10.013 | Free, Freely available | https://github.com/liang-bo/AutoStereota | SCR_022330 | 2026-02-12 09:47:34 | 2 | ||||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | data or information resource, portal, project portal, instrument resource | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | Raspberry Pi based auditory stimulus generator project | 2026-02-12 09:47:35 | 0 | |||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | software application, data processing software, software resource, data visualization software | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | 2026-02-12 09:47:23 | 0 | ||||||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | software resource, software application, data analysis software, data processing software | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | ABA project | 2026-02-12 09:47:35 | 0 | ||||||
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FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | software resource, software application, data analysis software, data processing software, data visualization software | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab https://flybrainlab.fruitflybrain.org/ |
SCR_022337 | 2026-02-12 09:47:32 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | software resource, software application, data analysis software, data processing software | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-02-12 09:48:00 | 0 | ||||||||
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Pi USB Cam project Resource Report Resource Website |
Pi USB Cam project (RRID:SCR_022834) | data or information resource, portal, project portal, instrument resource | Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. | OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals |
is listed by: OpenBehavior has parent organization: University of Illinois at Chicago; Illinois; USA |
DOI:10.1523/ENEURO.0224-22.2022 | Free, Freely available | SCR_022834 | Pi USB Cam system, Pi USB Cam | 2026-02-12 09:48:10 | 0 | ||||||||
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DANNCE Resource Report Resource Website 1+ mentions |
DANNCE (RRID:SCR_023061) | software resource, software application, data processing software, 3d visualization software, data visualization software | Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking. | OpenBehavior, track animals, pose information, 3D positions, video data, multiple cameras, 3D markerless pose estimation and tracking, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=DANNCE | SCR_023061 | 3-Dimensional Aligned Neural Network for Computational Ethology | 2026-02-12 09:47:33 | 1 | ||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | software application, data processing software, software resource, data visualization software | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-02-12 09:47:41 | 1 | ||||||||
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3D Printed Superfusion Chamber Resource Report Resource Website |
3D Printed Superfusion Chamber (RRID:SCR_022901) | data or information resource, portal, project portal, instrument resource | Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service. | Open Behavior, electrophysiological and neuroimaging recordings, 3D-printed tools, superfusion chamber, brain presser, animal stand | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-22.2022 | https://gitlab.com/lab-equipment-assemblies1/superfusion-chamber/-/tree/master | SCR_022901 | 3D Printed Superfusion Chamber project | 2026-02-12 09:47:47 | 0 | ||||||||
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PyMouseTracks Resource Report Resource Website |
PyMouseTracks (RRID:SCR_024453) | PMT | source code, instrument resource, software resource | Open source, adaptable tracking system for multiple rodents. Scalable and customizable system for tracking and behavior assessment consists of Raspberry Pi based video and RFID acquisition. Maximum of six rodents of any coat color can be tracked simultaneously in any user defined arena with few restrictions. For pose estimation and travel trajectory analysis, PyMouseTracks supports interfacing with open source packages such as DeepLabCut and Traja. | OpenBehavior, tracking system, tracking system for multiple rodents, Raspberry Pi based video, RFID acquisition, |
is listed by: OpenBehavior is related to: DeepLabCut |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pymousetracks/ | SCR_024453 | 2026-02-12 09:48:13 | 0 | ||||||||
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LFP Monitoring Resource Report Resource Website |
LFP Monitoring (RRID:SCR_024428) | source code, instrument resource, software resource | Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings. | OpenBehavior, acquisition system, long term video neurophysiology recordings, seizure detection, behavioral scoring, multianimal chronic Local Field Potential, video monitoring, LFP video recording, Graphical User Interface for seizure detection and behavioral scoring, Intan adapter board, Open Ephys acquisition system, Bonsai, custom made electrodes and cables, instrument, device, | is listed by: OpenBehavior | PMID:36192155 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lfpmonitoring/ | SCR_024428 | Local Field Potential video Monitoring | 2026-02-12 09:48:13 | 0 | |||||||
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PiDose project Resource Report Resource Website |
PiDose project (RRID:SCR_021441) | data or information resource, portal, project portal, instrument resource | Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module. | Oral drug administration, group housed mice, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1038/s41598-020-68477-2 | Free, Freely available | SCR_021441 | PiDose | 2026-02-12 09:47:48 | 0 | ||||||||
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openEyeTrack project Resource Report Resource Website |
openEyeTrack project (RRID:SCR_021399) | data or information resource, portal, project portal, instrument resource | Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux. | Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: openEyeTrack has parent organization: Boston University; Massachusetts; USA |
DOI:10.21105/joss.01631 | Free, Freely available | SCR_021399 | openEyeTrack | 2026-02-12 09:47:47 | 0 | ||||||||
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Automated Home Cage Rodent Two bottle Choice Test project Resource Report Resource Website |
Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) | data or information resource, portal, project portal, instrument resource | Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. | Automated home cage sipper device, Sipper, monitoring liquid, ingestive behavior, rodents, instrument, equipment, USEDit, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: SipperViz |
DOI:10.1523/eneuro.0292-19.2019 | Free, Freely available | SCR_021445 | Automated Home Cage Rodent Two bottle Choice Test | 2026-02-12 09:47:48 | 0 | ||||||||
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Platform for Acoustic STArtle project Resource Report Resource Website |
Platform for Acoustic STArtle project (RRID:SCR_021446) | PASTA, ratPASTA | data or information resource, portal, project portal, instrument resource | Project related to multifunctional neurobehavioral system developed by scientists at University of Zagreb School of Medicine, Zagreb, Croatia.System includes hardware and software tools.Provides software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. | Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Platform for Acoustic STArtle |
DOI:10.1038/s41598-021-82710-6 | Free, Freely available | SCR_021446 | Platform for Acoustic STArtle | 2026-02-12 09:47:20 | 0 | |||||||
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MotionMapper Resource Report Resource Website 1+ mentions |
MotionMapper (RRID:SCR_021384) | software resource, software application, data analysis software, data processing software | Software tool to work on videos (not poses).Uses image analysis and multivariate statistical methods to find stereotyped behaviors in flies, mice, and other species. | Find stereotyped behaviors, organisms behaviors, Behavior Measurement, Video Analysis, Behavior Video Analysis, Behavioral Data Analysis, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021384 | 2026-02-12 09:47:18 | 2 | |||||||||
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Behavioral Segmentation of Open-field in DeepLabCut Resource Report Resource Website 1+ mentions |
Behavioral Segmentation of Open-field in DeepLabCut (RRID:SCR_021385) | B-SOiD | software toolkit, software resource, software application, data analysis software, data processing software | Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut project is related to: Closed Loop Automated Reaching Apparatus |
DOI:10.1101/770271 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/b-soid-unsupervised-behavior-analysis/ | SCR_021385 | B-SOiD v2.0 | 2026-02-12 09:47:11 | 6 | ||||||
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Stytra project Resource Report Resource Website |
Stytra project (RRID:SCR_021416) | data or information resource, portal, project portal, instrument resource | Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. | Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Stytra |
DOI:10.1371/journal.pcbi.1006699 | Free, Freely available | SCR_021416 | Stytra | 2026-02-12 09:47:18 | 0 | ||||||||
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Online Animal Tracker Resource Report Resource Website 1+ mentions |
Online Animal Tracker (RRID:SCR_021412) | OAT | software application, image processing software, software resource, data processing software | Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/oat/ | SCR_021412 | 2026-02-12 09:47:18 | 2 |
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