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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PEDJAVA Resource Report Resource Website |
PEDJAVA (RRID:SCR_008429) | PEDJAVA | software application, software resource | Software application that allows pedigree entry and retrieval from an internet browser into a distant MS ACCESS database. Includes IP access restriction, automatic numbering of families and individuals and database consistency checks. (entry from Genetic Analysis Software) | gene, genetic, genomic, jdk, no restriction for client, server win 95/nt | is listed by: Genetic Analysis Software | nlx_154522 | SCR_008429 | PedJava | 2026-02-12 09:44:49 | 0 | ||||||||
|
GASP Resource Report Resource Website 100+ mentions |
GASP (RRID:SCR_008703) | GASP | software application, software resource | Software tool for testing and investigating methods in statistical genetics by generating samples of family data based on user specified models. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, fortran77, unix, dec-unix 4.0b, solaris 2.5, sgi-irix 6.2 | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154313 | SCR_008703 | Genometric Analysis Simulation Program | 2026-02-12 09:44:43 | 122 | |||||||
|
ETDT Resource Report Resource Website 1+ mentions |
ETDT (RRID:SCR_007576) | ETDT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for TDT test on markers with more than two alleles using a logistic regression analysis. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154303 | SCR_007576 | extended transmission/disequilibrium test | 2026-02-12 09:44:35 | 2 | |||||||
|
TRANSMIT Resource Report Resource Website 50+ mentions |
TRANSMIT (RRID:SCR_007571) | TRANSMIT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application that tests for association between genetic marker and disease by examining the transmission of markers from parents to affected offspring. The main features which differ from other similar programs are: (1) It can deal with transmission of multi-locus haplotypes, even if phase is unknown, and (2) Parental genotypes may be unknown. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154100 | SCR_007571 | 2026-02-12 09:44:29 | 50 | ||||||||
|
MULTIMAP Resource Report Resource Website 10+ mentions |
MULTIMAP (RRID:SCR_007168) | MULTIMAP | software application, software resource | Software program for automated construction of genetic maps (entry from Genetic Analysis Software) | gene, genetic, genomic, lisp, unix, (sun/compaq-alpha/hp..), bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154013, biotools:multimap | https://bio.tools/multimap | http://compgen.rutgers.edu/Multimap/ | SCR_007168 | 2026-02-12 09:44:38 | 27 | |||||||
|
ASPEX Resource Report Resource Website 1+ mentions |
ASPEX (RRID:SCR_008414) | ASPEX | software application, software resource | A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl, perl, (the graphic script requires xmgr, available from ftp://ftp.teleport.com/pub/users/pturner/acegr), unix, (solaris/sunos/irix/osf-1), linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154234, biotools:aspex | https://bio.tools/aspex | SCR_008414 | Affected Sib Pairs EXclusion map | 2026-02-12 09:44:40 | 9 | |||||||
|
GENEHUNTER++SAD Resource Report Resource Website |
GENEHUNTER++SAD (RRID:SCR_008777) | GENEHUNTER++SAD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154335 | SCR_008777 | 2026-02-12 09:44:41 | 0 | ||||||||
|
MAPMAKER/SIBS Resource Report Resource Website 1+ mentions |
MAPMAKER/SIBS (RRID:SCR_008012) | MAPMAKER/SIBS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Data analysis software for complete multipoint analysis. | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154465 | https://dsgweb.wustl.edu/aldi/software/manuals/mapmaker_sibs/mapmaker_sibs.pdf | ftp://ftp-genome.wi.mit.edu/distribution/software/sibs | SCR_008012 | GENEHUNTER | 2026-02-12 09:44:36 | 6 | |||||
|
FAMOZ Resource Report Resource Website 1+ mentions |
FAMOZ (RRID:SCR_007477) | FAMOZ | software application, software resource | Software application that uses likelihood calculation and simulation to perform parentage studies with codominant, dominant, cytoplasmic markers or combinations of the different types (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl/tk, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154086 | SCR_007477 | FAther/MOther | 2026-02-12 09:44:34 | 5 | ||||||||
|
CLUMP Resource Report Resource Website 100+ mentions |
CLUMP (RRID:SCR_007476) | CLUMP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that uses Monte Carlo method for assessing significance of a case-control association study with multi-allelic marker. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154028 | SCR_007476 | 2026-02-12 09:44:28 | 104 | ||||||||
|
TLINKAGE Resource Report Resource Website |
TLINKAGE (RRID:SCR_008838) | TLINKAGE | software application, software resource | Software programs that are extensions of the LINKAGE programs that allow the disease phenotype to be under the control of disease two loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos | is listed by: Genetic Analysis Software | nlx_154672 | SCR_008838 | two-locus trait linkage programs | 2026-02-12 09:44:53 | 0 | ||||||||
|
TREESCAN Resource Report Resource Website 10+ mentions |
TREESCAN (RRID:SCR_007108) | TREESCAN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that is intended to provide p-values for the hypothesis of association between evolutionary clades and continuous traits, using haplotype trees. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, ms-dos, macos, (x) | is listed by: Genetic Analysis Software | PMID:15681571 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154011 | SCR_007108 | 2026-02-12 09:44:38 | 12 | |||||||
|
Whap Resource Report Resource Website 1+ mentions |
Whap (RRID:SCR_007103) | Whap | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 24, 2015. This package is no longer supported. The majority of the functionality for conditional haplotype tests in population-based samples has been implemented in PLINK, with a better interface and more robust, faster computation: please use that from now on. Software tool to perform haplotype-based association analysis, for quantitative and qualitative traits, in population and family samples, using single nucleotide polymorphism or multiallelic marker data. What whap can do: * Analyze quantitative and qualitative traits * Handle unrelated individuals and/or parent-offspring trio data * Perform a regression-based haplotype association test for SNP data * Perform a secondary test based on pairwise haplotype similarity * Phase genotype data using a standard E-M approach, and handle ambiguity in E-M inferred haplotypes * Include covariates and moderator variables * Flexibly constrain effects across haplotypes to tested nested models * Perform a robust within-family test when parental genotypes are present * Analyze multiallelic markers (new) * Use dominant or recessive (new) genetic models (new) | gene, genetic, genomic, c, c++, unix, ms-windows, ms-dos, linux |
is listed by: Genetic Analysis Software is related to: PLINK |
MRC G9901258; NEI EY-12562 |
PMID:17118959 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31900 | SCR_007103 | 2026-02-12 09:44:30 | 9 | ||||||
|
TRAP Resource Report Resource Website 100+ mentions |
TRAP (RRID:SCR_009002) | TRAP | software application, software resource | Software tool for determining a regression model of quantitative or binary trait variation when the number of possible genetic predictors is very large, considering only a moderate number of predictors at one time, using unrelated or family data. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, any with r installation | is listed by: Genetic Analysis Software | nlx_154010 | SCR_009002 | Tiled Regression Analysis Package | 2026-02-12 09:44:44 | 394 | ||||||||
|
MGA-MAPF2 Resource Report Resource Website |
MGA-MAPF2 (RRID:SCR_008108) | MGA-MAPF2 | software application, software resource | Software application that map QTLs in F-2 intercross in model organisms (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-dos, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154478 | SCR_008108 | 2026-02-12 09:44:38 | 0 | |||||||||
|
R/SPECTRAL-GEM Resource Report Resource Website 10+ mentions |
R/SPECTRAL-GEM (RRID:SCR_007414) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154600, nlx_154655, SCR_009408 | SCR_007414 | SPECTRAL graph approach for GEnetic Matching, SPECTRAL-GEM | 2026-02-12 09:44:41 | 10 | |||||||||
|
ILR Resource Report Resource Website |
ILR (RRID:SCR_007895) | ILR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_007895 | Imprinting Likelihood Ratio | 2026-02-12 09:44:44 | 0 | ||||||||
|
SIBMED Resource Report Resource Website 1+ mentions |
SIBMED (RRID:SCR_007495) | SIBMED | software application, software resource | Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, ms-windows, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:sibmed, nlx_154043 | https://bio.tools/sibmed | SCR_007495 | SIBling Mutation and Error Detection | 2026-02-12 09:44:32 | 1 | |||||||
|
MAP MANAGER QT Resource Report Resource Website |
MAP MANAGER QT (RRID:SCR_008101) | MAP MANAGER QT | software application, software resource | A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, macos | is listed by: Genetic Analysis Software | nlx_154466 | SCR_008101 | 2026-02-12 09:44:46 | 0 | |||||||||
|
ACT Resource Report Resource Website |
ACT (RRID:SCR_009033) | ACT | software application, software resource | Software application that contains the following modules: ibd, calculates the proportion of gene shared identical by decent for a nuclear family; ibdn, (modified program of ERPA), which implements a method for assessing increased-allele sharing between all pairs of affected relatives within a pedigree; multic, multivariate analysis for complex traits; ml, estimation of variance components using maximum likelihood; ql, estimation of variance components using quasi likelihood; relcov, generates first degree relationship coefficients for extended families; sim2s, the simulation program that was used to test ACT; cage, Cohort Analysis for Genetic Epidemiology; gh: GeneHunter, heavily modified to assist multipoint calculation using multic; TDT: TDT programs written in SAS; gcc and f77 compilers are necessary. Executable programs are included for compatible operating systems, i.e., Solaris2.6. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, c++, unix, solaris 2.4 | is listed by: Genetic Analysis Software | nlx_153997 | http://www.epigenetic.org/Linkage/act.tar.gz | SCR_009033 | Analysis of Complex Traits | 2026-02-12 09:44:46 | 0 |
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