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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ABCDreport Resource Report Resource Website |
ABCDreport (RRID:SCR_016030) | data analysis software, software resource, data processing software, software application | Software application as a simple system to review study progress. Used in ABCD study. | system, simple, review, study, progress, development, adolescence, brain, cognitive, report | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016030 | 2026-02-13 10:57:39 | 0 | |||||||||
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FIONASITE Resource Report Resource Website |
FIONASITE (RRID:SCR_016012) | data processing software, data acquisition software, data transfer software, data management software, software application, software resource | Software for uploading data to FIONA and capturing MR images and k-space data from medical image systems. It provides a web-interface to automate the data review (image viewer), integrate with the centralized electronic data record for assigning anonymized id's, and forward the data to the central archive. | automate, data, upload, collection, network, appliance, abcd, study | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016014, SCR_016013 | http://qi.ucsd.edu/news-article.php?id=2342&go=newer | SCR_016012 | 2026-02-13 10:57:39 | 0 | |||||||
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Minimally-Processed-Image-Sharing Resource Report Resource Website |
Minimally-Processed-Image-Sharing (RRID:SCR_016016) | data processing software, data transfer software, data management software, data distribution software, software application, software resource | Software to share ABCD minimally processed data. It uploads minimally-processed MRI data to the NDA ( Non-Disclosure Agreement) ABCD (Adolescent Brain Cognitive Development) repository. | share, data, minimally processed, image, files, fast-track, non-processed, link, store, upload |
is related to: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | SCR_016016 | 2026-02-13 10:57:36 | 0 | ||||||||||
|
enroll Resource Report Resource Website 10+ mentions |
enroll (RRID:SCR_016011) | data processing software, data storage software, data management software, software application, software resource | Software which provides a framework for the secure storage of Personal Identifyable Information (PII) for a multi-site longitudinal project centrally. Used in Adolescent Brain Cognitive Development (ABCD) Study. | database, secure, framework, multisite, personal, identifiable, information, adolescence, abcd |
has parent organization: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016011 | 2026-02-13 10:57:42 | 13 | |||||||||
|
tick-tock Resource Report Resource Website |
tick-tock (RRID:SCR_016023) | data visualization software, data processing software, web application, software application, software resource | Software for research study observation that visualizes study related events per day. Any event generating function sends a 'tick' event to this application which will be visible on this applications web-interface. | application, research, study, visualization, event, web, interface, observation, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016023 | 2026-02-13 10:57:44 | 0 | |||||||||
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FIONA-protocol-compliance Resource Report Resource Website |
FIONA-protocol-compliance (RRID:SCR_016027) | data analysis software, software resource, data processing software, software application | Software that contains multiple sequential lines of MATLAB commands and function calls for numerical computing for ABCD study protocol compliance. | application, multiple, sequential, lines, commands, function, numerical, computing, protocol, compliance | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016027 | 2026-02-13 10:57:45 | 0 | |||||||||
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Fast-Track-Image-Sharing Resource Report Resource Website |
Fast-Track-Image-Sharing (RRID:SCR_016021) | data processing software, data transfer software, data management software, software application, software resource | Software for sharing the ABCD (Adolescent Brain Cognitive Development) study data on the National Data Archive (NDA). | sharing, tool, study, data, national, archive, abcd, nda, adolescent | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016021 | 2026-02-13 10:57:42 | 0 | |||||||||
|
eprime-data-clean Resource Report Resource Website |
eprime-data-clean (RRID:SCR_016020) | data management software, software resource, data processing software, software application | Software to convert E-Prime (software tool for psychology computerized experiment design, data collection, and analysis) generated files to CSV files without errors during conversion. The ABCD project is using E-Prime to run behavioral tests. | convert, data, psychology, computerized, experiment, design, collection, analysis, generate, file, errors, conversion, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016020 | 2026-02-13 10:57:36 | 0 | |||||||||
|
geocoding Resource Report Resource Website 10+ mentions |
geocoding (RRID:SCR_016007) | data processing software, data analysis software, data analytics software, software application, software resource | Software that uses a geo-location database to determine individuals' residential environment in Adolescent Brain Cognitive Development (ABCD) study. It performs queries given individuals' residential history in longitude and latitude. | software, data, analysis, geo-location, residential, environment, abcd, study |
has parent organization: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016007 | ABCD geocoding, ABCD geocoding project, geocoding project | 2026-02-13 10:57:44 | 23 | ||||||||
|
USC Multimodal Connectivity Database Resource Report Resource Website 10+ mentions |
USC Multimodal Connectivity Database (RRID:SCR_012809) | UMCD | data repository, storage service resource, data or information resource, service resource, database | Web-based repository and analysis site for connectivity matrices that have been derived from neuroimaging data including different imaging modalities, subject groups, and studies. Users can analyze connectivity matrices that have been shared publicly and upload their own matrices to share or analyze privately. | fmri, dti, dsi, mri, eeg, meg, data set, image, computational hosting, connectivity, neuroimaging, data sharing, brain, rendering, diffusion-weighted mri, functional connectivity, graph theory, resting-state fmri, structural connectivity, image display, magnetic resonance, python, rendering, visualization, connectivity matrix, network, brain network, matrix, de-identified, male, female, apoe, child, adult |
is used by: NIF Data Federation is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: MGH-USC Human Connectome Project |
Normal, Lesioned, Attention deficit-hyperactivity disorder, Autism Spectrum Disorder, Obsessive-Compulsive Disorder, BDD, APOE 4/4, APOE 3/4, APOE 3/3, Alzheimer's disease | NRSA ; NIH Blueprint for Neuroscience Research ; NIA F31AG035438-01; NIDA HHSN271200800035C |
PMID:23226127 PMID:20850551 |
The community can contribute to this resource, Some features require an account | nlx_83091 | http://www.nitrc.org/projects/umcd | http://jessebrown.webfactional.com/welcome/default/index | SCR_012809 | UCLA Connectivity Database, UCLA Multimodal Connectivity Database: Web-based brain network analysis and data sharing, UCLA Multimodal Connectivity Database | 2026-02-13 10:57:01 | 25 | ||
|
iTools Resource Report Resource Website 10+ mentions |
iTools (RRID:SCR_009626) | iTools | data repository, storage service resource, web service, software repository, data or information resource, service resource, data access protocol, software resource, database | An infrastructure for managing of diverse computational biology resources - data, software tools and web-services. The iTools design, implementation and meta-data content reflect the broad NCBC needs and expertise (www.NCBCs.org). | computational neuroscience, data, experiment control, hardware, imaging genomics, information specification, java, loni pipeline, model, ontology, os independent, metadata |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: National Centers for Biomedical Computing has parent organization: Laboratory of Neuro Imaging |
NIH Roadmap for Medical Research ; NCRR U54-RR021813; NIDA U54-DA021519; NCI U54-CA121852; NHGRI U54-HG004028; NIGMS U54-GM072970; NIBIB U54-EB005149; NLM U54-LM008748 |
PMID:18509477 | GNU Lesser General Public License | nlx_155852 | http://www.nitrc.org/projects/itools http://www.loni.usc.edu/research/software |
http://itools.loni.ucla.edu/ | SCR_009626 | ITools Resourceome, NCBC iTools | 2026-02-13 10:56:28 | 45 | |||
|
RatsPub Resource Report Resource Website |
RatsPub (RRID:SCR_018905) | web service, text-mining software, software application, data access protocol, software resource | Web service that conducts comprehensive literature mining to identify roles of genes in addiction. Searches PubMed to find abstracts containing genes of interest and list of curated addiction related keywords. | Literature mining, addiction gene, PubMed abstract, gene, addiction, addiction relationship, neurogenetics | NIDA P30 DA044223; NIDA U01 DA047638 |
Free, Freely available | https://github.com/chen42/ratspub | SCR_018905 | rats.pub, Rats.pub, Relationship with Addiction Through Searches of PubMed | 2026-02-13 10:58:17 | 0 | ||||||||
|
Subcellular Location Image Finder Resource Report Resource Website 1+ mentions |
Subcellular Location Image Finder (RRID:SCR_006723) | SLIF | data or information resource, database, image | SLIF finds fluorescence microscope images in on-line journal articles, and indexes them according to cell line, proteins visualized, and resolution. Images can be accessed via the SLIF Web database. SLIF takes on-line papers and scans them for figures that contain fluorescence microscope images (FMIs). Figures typically contain multiple FMIs, to SLIF must segment these images into individual FMIs. When the FMI images are extracted, annotations for the images (for instance, names of proteins and cell-lines) are also extracted from the accompanying caption text. Protein annotation are also used to link to external databases, such as the Gene Ontology DB. The more detailed process includes: segmentation of images into panels; panel classification, to find FMIs; segmentation of the caption, to find which portions of the caption apply to which panels; text-based entity extraction; matching of extracted entities to database entries; extraction of panel labels from text and figures; and alignment of the text segments to the panels. Extracted FMIs are processed to find subcellular location features (SLFs), and the resulting analyzed, annotated figures are stored in a database, which is accessible via SQL queries. | fluorescence, annotation, cell, journal, microscope, protein, subcellular, image, cell line, fluorescence microscope, information retrieval, data mining |
is listed by: Biositemaps has parent organization: Carnegie Mellon University; Pennsylvania; USA |
Commonwealth of Pennsylvania Tobacco Settlement Fund ; National Center for Integrative Biomedical Informatics ; NIGMS R01 GM078622; NIDA U54 DA021519 |
PMID:17990497 | nif-0000-10308 | SCR_006723 | SLIF - Subcellular Location Image Finder | 2026-02-13 10:55:55 | 1 | ||||||
|
Addiction Research GPCR Assay Bank Resource Report Resource Website 1+ mentions |
Addiction Research GPCR Assay Bank (RRID:SCR_002895) | biomaterial supply resource, cell repository, material resource | Describes data from and access to permanent cell lines containing beta-arrestin fluorescent protein biosensors. This assay Bank provides plasmids, cells lines, and resulting data to the NIDA/NIH funded research community in order to better understand and combat addiction. | fluorescent, addiction, assay, beta-arrstin, biology, biosensor, cell, data, g protein, g-protein coupled receptor, ligand, plasmid, protein, receptor, catalog, protein supplier, supplier |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Duke University; North Carolina; USA |
Addiction | NIDA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25722 | SCR_002895 | GPCR Assay Bank | 2026-02-13 10:55:08 | 1 | ||||||
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FINDTHECAT Resource Report Resource Website |
FINDTHECAT (RRID:SCR_016036) | software resource, software application | Software that conducts a jspsych test for response time evaluation. Used in the ABCD Study. | psych, jspsych, psychology, response, time, evaluation, task, test, abcd, adolescent | NIDA U24 DA041123 | Free, Available for download | SCR_016036 | 2026-02-13 10:57:45 | 0 | ||||||||||
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stroop-task Resource Report Resource Website 1+ mentions |
stroop-task (RRID:SCR_016033) | software resource, software application | Software that conducts the Stroop Color Task. Used in the ABCD Study. | stroop, task, color, vision, abcd, adolesence, study | NIDA U24 DA041123 | Free, Available for download | SCR_016033 | 2026-02-13 10:57:42 | 1 | ||||||||||
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DeepNeuro Resource Report Resource Website 1+ mentions |
DeepNeuro (RRID:SCR_016911) | software resource, software toolkit | Software Python package for neuroimaging data. Framework to design and train neural network architectures. Used in medical imaging community to ensure consistent performance of networks across variable users, institutions, and scanners. | Design and train neural network architectures, medical imaging, neuroimaging data, neuroimaging |
uses: Python Programming Language is related to: Massachusetts General Hospital has parent organization: Harvard University; Cambridge; United States |
NIDA T90 DA022759; NIDA R90 DA023427; NIH Blueprint for Neuroscience Research ; NIBI ; NIBIB T32 EB1680; NCI U01 CA154601; NCI U24 CA180927; NCI U24 CA180918; NIBIB P41 EB015896 |
PMID:32578020 | Free, Available for download, Freely available | SCR_016911 | 2026-02-13 10:57:48 | 2 | ||||||||
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CloudReg Resource Report Resource Website |
CloudReg (RRID:SCR_022795) | software resource, image analysis software, data processing software, software application | Software automated, terascale, cloud based image analysis pipeline for preprocessing and cross modal, nonlinear registration between volumetric datasets with artifacts. Automatic terabyte scale cross modal brain volume registration. | brain volume, nonlinear registration, automatic terabyte scale, cross modal brain volume registration, image analysis pipeline, volumetric datasets with artifacts | is used by: BICCN | NIA R01 AG066184; NSF EEC 1707298; NIMH U19MH114821; Kavli Neuroscience Discovery Institute ; Karen Toffler Charitable Trust ; NIMH R01 MH099647; NIMH K08MH113039; NIDA 1K99DA050662; AP Giannini Foundation ; NINDS K99 NS116122; NIA P01AG009973; Johns Hopkins University Kavli Neuroscience Discovery Institute Postdoctoral Fellowship ; Microsoft Research |
PMID:34253927 | Free, Available for download, Freely available | https://github.com/neurodata/CloudReg/ | SCR_022795 | 2026-02-13 10:58:48 | 0 | |||||||
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numerical-fitting Resource Report Resource Website |
numerical-fitting (RRID:SCR_016025) | software resource, software library, software toolkit | Software for a numerical computation library that performs numerical calculations. Used in ABCD study. | numerical, computation, library, calculation, performing, client, side, javascript, js, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016025 | 2026-02-13 10:57:42 | 0 | |||||||||
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pMAT Resource Report Resource Website 1+ mentions |
pMAT (RRID:SCR_022570) | pMAT | data analysis software, software resource, data processing software, software application | Open source software suite for analysis of fiber photometry data. | fiber photometry data analysis, fiber photometry | NIDA DA043572 | PMID:33385438 | SCR_022570 | Photometry Modular Analysis Tool | 2026-02-13 10:58:44 | 6 |
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