Tools   Select Another Resource Report Type

http://ncit.nci.nih.gov/

A reference terminology and core biomedical ontology for NCI that covers approximately 100,000 key biomedical concepts with terms, codes, definitions, and more than 200,000 inter-concept relationships. It is the reference terminology for NCI, NCI Metathesaurus and NCI informatics infrastructure covering vocabulary for clinical care, translational and basic research, and public information and administrative activities. It includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities; anatomy; agents, drugs and chemicals; genes and gene products and so on. In certain areas, like cancer diseases and combination chemotherapies, it provides the most granular and consistent terminology available. It combines terminology from numerous cancer research related domains, and provides a way to integrate or link these kinds of information together through semantic relationships. NCIt features: * Stable, unique codes for biomedical concepts; * Preferred terms, synonyms, definitions, research codes, external source codes, and other information; * Links to NCI Metathesaurus and other information sources; * Over 200,000 cross-links between concepts, providing formal logic-based definition of many concepts; * Extensive content integrated from NCI and other partners, much available as separate NCIt subsets * Updated frequently by a team of subject matter experts. NCIt is a widely recognized standard for biomedical coding and reference, used by a broad variety of public and private partners both nationally and internationally including the Clinical Data Interchange Standards Consortium Terminology (CDISC), the U.S. Food and Drug Administration (FDA), the Federal Medication Terminologies (FMT), and the National Council for Prescription Drug Programs (NCPDP).

Proper citation: NCI Thesaurus (RRID:SCR_003563) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MIRO

Application ontology for entities related to insecticide resistance in mosquitos

Proper citation: Mosquito Insecticide Resistance Ontology (RRID:SCR_003864) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EMAP

A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).

Proper citation: Mouse Gross Anatomy and Development Ontology (RRID:SCR_003891) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MSTDE-FRE

Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy, French Translation, 2001

Proper citation: Minimal Standard Terminology of Digestive Endoscopy - French (RRID:SCR_003830) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SNOMEDCT

Ontology of SNOMED (Systematized Nomenclature of Medicine) clinical terms.

Proper citation: Systematized Nomenclature of Medicine - Clinical Terms (RRID:SCR_003915) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MPATH

A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes

Proper citation: Mouse Pathology Ontology (RRID:SCR_003950) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NHSQI2009

Ontology to organise a 2009 set of over 200 NHS quality indicators from different sources. Relationships between indicators, a basic set of inclusion / exclusion criteria, clinical pathway, clinical code and purpose (per 1992 Institute of Medicine, originally intended to categorise clinical guidelines) are identifies and made searchable.

Proper citation: NHS Quality Indicators (RRID:SCR_004005) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OPB

A reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.

Proper citation: Ontology of Physics for Biology (RRID:SCR_004144) Copy   

•   Source: SciCrunch Registry

https://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology

A multi-species anatomy ontology for teleost fishes. It was originally seeded from ZFA, but covers terms relevant to other taxa. The TAO uses terms from the Common Anatomy Reference Ontology (CARO) as a template for its upper level nodes, and the Vertebrate Skeletal Anatomy Ontology (VSAO) for general skeletal anatomy classes. Growth of the TAO is enabled by contributions from data curators and the ichthyological community. The TAO can be browsed by using the NCBO BioPortal and data annotated using TAO terms can be queried using the Phenoscape Knowedgebase.

Proper citation: Teleost Anatomy Ontology (RRID:SCR_001610) Copy   

•   Source: SciCrunch Registry

http://www.biopax.org/

Community standard for pathway data sharing. Standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Supports data exchange between pathway data groups and thus reduces complexity of interchange between data formats by providing accepted standard format for pathway data. Open and collaborative effort by community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in RDF/XML format.Uses W3C standard Web Ontology Language, OWL.

Proper citation: Biological Pathways Exchange (RRID:SCR_001681) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RPO

A controlled vocabulary of ontology class structures and entities of observed phenotypic terms for primary immunodeficiency diseases (PIDs) that facilitate global sharing and free exchange of PID data with users'' communities

Proper citation: Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology (RRID:SCR_006776) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/WB-LS

A structured controlled vocabulary of the development of Caenorhabditis elegans.

Proper citation: C. elegans Development Vocabulary (RRID:SCR_006811) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/WB-BT

A structured controlled vocabulary of the anatomy of Caenorhabditis elegans.

Proper citation: C. elegans Gross Anatomy Vocabulary (RRID:SCR_006835) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IDOBRU

A biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.

Proper citation: Brucellosis Ontology (RRID:SCR_006795) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/WB-PHENOTYPE

A structured controlled vocabulary of Caenorhabditis elegans phenotypes.

Proper citation: C. elegans Phenotype Vocabulary (RRID:SCR_006924) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CCON

Ontology of Cerrado wood plant dynamics to represent the set of concepts about the dynamics, that is, changes over time of the wood vegetation structure, of Cerrado. Ccon describes the main parameters used to measure the changes, such as mortality rate and recruitment rate.

Proper citation: Cerrado concepts and plant community dynamics (RRID:SCR_007174) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EP

Ontology that contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels.

Proper citation: Cardiac Electrophysiology Ontology (RRID:SCR_007065) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GRO-CPGA

A structured controlled vocabulary for the anatomy of Gramineae. Please note that this ontology has now been superseded by the Plant Ontology, http://bioportal.bioontology.org/ontologies/1587.

Proper citation: Cereal Plant Gross Anatomy Ontology (RRID:SCR_007061) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CCONT

ontology for the formal representation of cell lines and their correspnding culture conditions.

Proper citation: Cell Culture Ontology (RRID:SCR_007096) Copy   

•   Source: SciCrunch Registry

http://fireball.drexelmed.edu/birnlex/OWLdocs/

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Lexicon that provides entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. These sources may include complex image databases, such as data from structural and functional magnetic resonance imaging (MRI) on human subjects involved in studies on Alzheimer''s disease or schizophrenia. The BIRNLex is a specialized vocabulary utilized by BIRN scientists in the context of their research, including common terms for neuroanatomy, molecular species, subject information, behavioral and cognitive processes, experimental practice and design, and the associated elements of primary data provenance required for large-scale data integration across disparate experimental studies.The BIRNLex offers well defined terms from several domains of importance to neuroimaging across scales.

Proper citation: BIRNLex (RRID:SCR_007326) Copy   

•   Source: SciCrunch Registry