Tools   Select Another Resource Report Type

http://www.mhh.de/acghtool.html

A software tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs.

Proper citation: aCGHtool (RRID:SCR_010915) Copy   

•   Source: SciCrunch Registry

https://earray.chem.agilent.com/cghanalytics/index.html

A comprehensive design and analysis tool for setting up and interpreting your microarray experiments.

Proper citation: Agilent Genomic Workbench (RRID:SCR_010918) Copy   

•   Source: SciCrunch Registry

http://pages.cs.wisc.edu/~kliang/DBChIP/

Detects differential binding of transcription factors with ChIP-seq.

Proper citation: DBChIP (RRID:SCR_010872) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/DIME/index.html

R-package for identifying differential ChIP-seq based on an ensemble of mixture models.

Proper citation: DIME (RRID:SCR_010874) Copy   

•   Source: SciCrunch Registry

http://www.cs.ucf.edu/~xiaoman/ChIPModule/ChIPModule.html

A software tool for systematic discovery of transcription factors and their cofactors from ChIP-seq data.

Proper citation: ChIPModule (RRID:SCR_010877) Copy   

•   Source: SciCrunch Registry

http://bio-bwa.sourceforge.net/

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

Proper citation: BWA (RRID:SCR_010910) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/apps/mediawiki/cloudburst-bio/index.php?title=CloudBurst

A new parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.

Proper citation: CloudBurst (RRID:SCR_010911) Copy   

•   Source: SciCrunch Registry

http://erne.sourceforge.net/

A short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads.

Proper citation: ERNE (RRID:SCR_010912) Copy   

•   Source: SciCrunch Registry

http://fureylab.web.unc.edu/software/fseq/

A software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser.

Proper citation: F-Seq (RRID:SCR_010880) Copy   

•   Source: SciCrunch Registry

http://homer.ucsd.edu/

Software tools for Motif Discovery and next-gen sequencing analysis. Used for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. Collection of command line programs for unix style operating systems written in Perl and C++.

Proper citation: HOMER (RRID:SCR_010881) Copy   

•   Source: SciCrunch Registry

http://www.carleton.ca/

Public comprehensive university in Ottawa, Ontario, Canada. Founded in 1942 as Carleton College, a private, non-denominational evening college to serve returning World War II.

Proper citation: Carleton University; Ontario; Canada (RRID:SCR_011136) Copy   

•   Source: SciCrunch Registry

https://www.aldevron.com/

Contract manufacturing services company, specializing in plasmid DNA manufacturing, protein services and antibody development.Producesg high quality plasmid DNA, proteins, enzymes, antibodies, and other biologicals in support of clients objectives.

Proper citation: Aldevron (RRID:SCR_011017) Copy   

•   Source: SciCrunch Registry

http://www.mrc.ac.uk/Fundingopportunities/index.htm

The Medical Research Council is a publicly-funded organization dedicated to improving human health. We support research across the entire spectrum of medical sciences, in universities and hospitals, in our own units, centers and institutes in the UK, and in our units in Africa.

Proper citation: Medical Research Council (RRID:SCR_011018) Copy   

•   Source: SciCrunch Registry

https://uclouvain.be/fr/index.html

Belgium's largest French speaking university.

Proper citation: Catholic University of Louvain; Louvain-la-Neuve; Belgium (RRID:SCR_011141) Copy   

•   Source: SciCrunch Registry

http://www.ics-mci.fr/en/

Research infrastructure for generation of new mouse models,being therefore the most important transgenic mouse production unit in France.

Proper citation: Mouse Clinical Institute; Alsace; France (RRID:SCR_011021) Copy   

•   Source: SciCrunch Registry

https://www.cayetano.edu.pe/cayetano/es/

Private nonprofit university located in Lima, Peru. It was named in honor of Cayetano Heredia, one of the eminent Peruvian physicians of the 19th century. The university is overseen by a board of trustees and is not owned by any private or state entity.

Proper citation: Cayetano Heredia University; Lima; Peru (RRID:SCR_011142) Copy   

•   Source: SciCrunch Registry

http://www.cit.nih.gov/

The Center for Information Technology''s (CIT) mission is to provide, coordinate, and manage information technology and to advance computational science. CIT incorporates the power of modern computers into the biomedical programs and administrative procedures of the NIH by focusing on three primary activities: conducting computational biosciences research, developing computer systems, and providing computer facilities. CIT supports NIH''s research and management programs with efficient, cost-effective administrative and high-powered scientific computing, software development, networking, and telecommunications services. CIT also provides bioinformatics support through its scientists, engineers, and mathematicians. Among its activities, the CIT: * engages in collaborative research and provides collaborative support to NIH investigators in the area of computational bioscience * provides efficient, cost-effective information systems and networking services * provides state-of-the-art scientific and administrative computing facilities * identifies new computing technologies with innovative applications to biomedical research * creates, purchases, and distributes software applications * provides NIH staff with computing information, expertise, and training * provides data-processing and high-performance computing facilities, integrated telecommunications data networks, and services to the U.S. Department of Health and Human Service (HHS) and other Federal agencies * serves as a data center to HHS and other Federal agencies * develops, administers, and manages NIH systems and provides consulting services to NIH Institutes and Centers in support of administrative and business applications

Proper citation: Center for Information Technology (RRID:SCR_011143) Copy   

•   Source: SciCrunch Registry

http://www.uccaribe.edu/

Private university in Bayamón, Puerto Rico that focuses on graduate studies and professional certifications in the health sciences.

Proper citation: Central University of the Caribbean; Puerto Rico; USA (RRID:SCR_011145) Copy   

•   Source: SciCrunch Registry

https://genome.unc.edu/

Database for microarray data storage, retrieval, analysis, and visualization.

Proper citation: UNC Microarray Database (RRID:SCR_010979) Copy   

•   Source: SciCrunch Registry

http://www.cgu.edu.tw/bin/home.php?Lang=en

Chang Gung University is a private university in Guishan District, Taoyuan City, Taiwan.

Proper citation: Chang Gung University; Taoyuan; Taiwan (RRID:SCR_011149) Copy   

•   Source: SciCrunch Registry