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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SNIPPEEP Resource Report Resource Website 1+ mentions |
SNIPPEEP (RRID:SCR_013309) | software application, software resource | Software application that is an interactive graphic interface to visualise results from whole genome genotyping. It allows one to visualise single subjects and groups of subjects, and provides a direct connection with the UCSC Genome Browser. (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154019 | SCR_013309 | 2026-02-15 09:20:44 | 3 | ||||||||||
|
QTDT Resource Report Resource Website 10+ mentions |
QTDT (RRID:SCR_013391) | QTDT | software application, software resource | Software application that performs linkage disequilibrium (TDT) and association analysis for quantitative traits. Includes support for the methods of Abecasis et al. (2000), Fulker et al. (1999), Monks et al. (1998), Allison (TDTQ5, 1997) and Rabinowitz (1997). Supports families of any size, with or without parental information. Includes simple variance components modelling. Interfaces with SimWalk2 for IBD estimation. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154101 | SCR_013391 | Quantitative (Trait) Transmission/Disequilibrium Test | 2026-02-15 09:20:27 | 34 | ||||||||
|
BAYESFST Resource Report Resource Website 1+ mentions |
BAYESFST (RRID:SCR_013479) | software application, software resource | Software application for Bayesian estimation of the coancestry coefficient FST (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154236, biotools:bayesfst | https://bio.tools/bayesfst | SCR_013479 | 2026-02-15 09:20:46 | 2 | |||||||||
|
PANGAEA Resource Report Resource Website 100+ mentions |
PANGAEA (RRID:SCR_013119) | PANGAEA | software application, software resource | Collection of nine software packages for genetic analysis: BOREL, HARDY, MORGAN (now 2 and 3), Pedpack, InSegT, Loki, MCLEEPS, Pedfiddler, and Eclipse. | gene, genetic, genomic, c, or, c++, unix, (compaq, solaris, and others), linux |
is listed by: Genetic Analysis Software is related to: BOREL |
nlx_154507 | SCR_013119 | Pedigree ANalysis for Genetics (And Epidemiological Attributes) | 2026-02-15 09:20:38 | 132 | ||||||||
|
PEDPACK Resource Report Resource Website 1+ mentions |
PEDPACK (RRID:SCR_013125) | software application, software resource | Software programs for pedigree analysis, including segregation analysis, gene extinction, and pedigree graphics. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (compaq-alpha/..) | is listed by: Genetic Analysis Software | nlx_154523 | SCR_013125 | PANGAEA | 2026-02-15 09:20:24 | 4 | |||||||||
|
SUPERLINK Resource Report Resource Website 10+ mentions |
SUPERLINK (RRID:SCR_013360) | SUPERLINK | software application, software resource | Software program that performs exact linkage analysis with the same input-output relationships as in standard genetic linkage programs such as LINKAGE, FASTLINK, VITESSE, but can run larger files than previous programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows, linux, macos x | is listed by: Genetic Analysis Software | nlx_154665 | SCR_013360 | 2026-02-15 09:20:27 | 23 | |||||||||
|
SASGENE Resource Report Resource Website |
SASGENE (RRID:SCR_013084) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. SAS software program for gene segregation and linkage analysis in breeding population (entry from Genetic Analysis Software) | gene, genetic, genomic, sas, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:sasgene, nlx_154608 | https://bio.tools/sasgene | SCR_013084 | 2026-02-15 09:20:42 | 0 | ||||||||
|
HWMET Resource Report Resource Website |
HWMET (RRID:SCR_013480) | HWMET | software application, software resource | Software application for Bayesian estimation of the population inbreeding coefficient f (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154404 | SCR_013480 | 2026-02-15 09:20:28 | 0 | |||||||||
|
VH Resource Report Resource Website |
VH (RRID:SCR_013402) | VH | software application, software resource | Software application for displaying estimated haplotype data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154689 | SCR_013402 | visual haplotype | 2026-02-15 09:20:43 | 0 | ||||||||
|
ECLIPSE Resource Report Resource Website 100+ mentions |
ECLIPSE (RRID:SCR_013130) | software application, software resource | A set of three programs, preproc, eclipse2 and eclipse3 which analyze genetic marker data for genotypic errors and pedigree errors. Using a single preprocessing program (preproc), eclipse2 analyzes data on pairs of individuals, and eclise3 analyzes data jointly on trios. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, tested on, unix, (compaq tru64 v5.0a), bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154290, biotools:eclipse | https://bio.tools/eclipse | SCR_013130 | Error Correcting Likelihoods In Pedigree Structure Estimation. PANGAEA | 2026-02-15 09:20:41 | 121 | ||||||||
|
GRR Resource Report Resource Website |
GRR (RRID:SCR_013496) | GRR | software application, software resource | A graphical tool designed for detection of errors in relationship specification in general pedigrees by use of genome scan marker data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows | is listed by: Genetic Analysis Software | nlx_154365 | SCR_013496 | Graphical Representation of Relationships | 2026-02-15 09:20:29 | 0 | ||||||||
|
PEDFIDDLER Resource Report Resource Website |
PEDFIDDLER (RRID:SCR_013376) | PEDFIDDLER | software application, software resource | Software suite of six programs that can be used as a stand-alone extension of the pedigree drawing facilities found in the publicly available version of PEDPACK. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, (osf1, and solaris 2.7, alphalinux), ms-windows, (xp home/win32/win95), linux | is listed by: Genetic Analysis Software | nlx_154517 | SCR_013376 | PEDPACK in PANGAEA | 2026-02-15 09:20:27 | 0 | ||||||||
|
VG Resource Report Resource Website 1+ mentions |
VG (RRID:SCR_013378) | VG | software application, software resource | Software program that presents complete raw datasets of individuals'' genotype data using a display format with samples as rows and polymorphisms as columns. The color code is: (1) blue: homozygous genotype for the common allele; (2) red: heterozygous genotype; (3) yellow: homozygous genotype for the rare allele; and (4) grey: missing data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154688 | SCR_013378 | Visual Genotype | 2026-02-15 09:20:43 | 3 | ||||||||
|
TAGIMPUTE Resource Report Resource Website |
TAGIMPUTE (RRID:SCR_013338) | software application, software resource | A command-line program for the imputation of untyped SNPs. tagIMPUTE is based on a few flanking SNPs that can optimally predict the SNP under imputation. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154670 | SCR_013338 | TAGging-snp based IMPUTATE | 2026-02-15 09:20:44 | 0 | |||||||||
|
SNP HITLINK Resource Report Resource Website |
SNP HITLINK (RRID:SCR_013340) | SNP HITLINK | software application, software resource | Software program providing a useful pipeline to directly connect SNP data and linkage analysis program. SNP HiTLink currently supports the data from SNP chips provided by Affymetrix (Mapping 100k/500k array set, Genome-Wide Human SNP array 5.0/6.0) and Illumina (recently supported), carrying out typical linkage analysis programs of MLINK (FASTLINK/ LINKAGE package), Superlink, Merlin and Allegro. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154644, biotools:snp_hitlink | https://bio.tools/snp_hitlink | SCR_013340 | SNP HIgh-Throughput LINKage analysis system | 2026-02-15 09:20:43 | 0 | |||||||
|
SGS Resource Report Resource Website |
SGS (RRID:SCR_013460) | SGS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, visualbasic, ms-windows, (95/98/00/nt) | is listed by: Genetic Analysis Software | nlx_154054 | SCR_013460 | 2026-02-15 09:20:28 | 0 | |||||||||
|
MCLEEPS Resource Report Resource Website |
MCLEEPS (RRID:SCR_013062) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, macos | is listed by: Genetic Analysis Software | nlx_154469 | SCR_013062 | Monte Carlo Likelihood Estimation of Effective Population Size PANGAEA | 2026-02-15 09:20:40 | 0 | |||||||||
|
AUTOSCAN Resource Report Resource Website 10+ mentions |
AUTOSCAN (RRID:SCR_013510) | AUTOSCAN | software application, software resource | A helper program to automate the tedious process of the creation of input files from genotype data of genome-wide scans (entry from Genetic Analysis Software) | gene, genetic, genomic, c and unix-shell (bourne), unix, (solaris/dec-unix) | is listed by: Genetic Analysis Software | nlx_154235 | SCR_013510 | 2026-02-15 09:20:42 | 18 | |||||||||
|
ILLUMINUS Resource Report Resource Website |
ILLUMINUS (RRID:SCR_000388) | Illuminus | software application, software resource | A fast and accurate algorithm for assigning single nucleotide polymorphism (SNP) genotypes to microarray data from the Illumina BeadArray technology. | gene, genetic, genomic, c++, single nucleotide polymorphism, genotype, microarray, illumina beadarray, illumina |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:17846035 | Free, Available for download, Freely available | OMICS_00726, nlx_154408 | http://www.sanger.ac.uk/resources/software/illuminus/ | http://www.sanger.ac.uk/science/tools/illuminus | SCR_000388 | Illuminus: the genotype calling algorithm | 2026-02-15 09:17:55 | 0 | ||||
|
PELICAN Resource Report Resource Website 10+ mentions |
PELICAN (RRID:SCR_001695) | PELICAN | software application, software resource | Software utility for graphically editing the pedigree data files used by programs such as FASTLINK, VITESSE, GENEHUNTER and MERLIN. It can read in and write out pedigree files, saving changes that have been made to the structure of the pedigree. Changes are made to the pedigree via a graphical display interface. The resulting display can be saved as a pedigree file and as a graphical image file. | gene, genetic, genomic, java, pedigree, linkage analysis, editor |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Google Sites |
PMID:15059819 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00215, nlx_154035 | http://www.mrc-bsu.cam.ac.uk/personal/frank/software/pelican/, http://www.rfcgr.mrc.ac.uk/Software/PELICAN/ | SCR_001695 | Pedigree Editor for LInkage Computer ANalysis | 2026-02-15 09:18:09 | 13 |
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