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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MALDSOFT Resource Report Resource Website |
MALDSOFT (RRID:SCR_009269) | MALDSOFT | software application, software resource | Software program for admixture mapping of complex trait loci, using case-control data. The samples should come from a recently-admixed population; additional ''learning'' samples from the parental populations are helpful. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, linux, ms-windows, (dos/window...) | is listed by: Genetic Analysis Software | nlx_154449 | SCR_009269 | 2026-02-15 09:20:09 | 0 | |||||||||
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LRTAE Resource Report Resource Website 1+ mentions |
LRTAE (RRID:SCR_009265) | LRTAE | software application, software resource | Software application to compute a likelihood ratio test statistic that increases power to detect genetic association in the presence of phenotype, genotype, and/or haplotype misclassification errors. In addition, the program produces asymptotically unbiased estimates of frequency parameters. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, unix, solaris, linux | is listed by: Genetic Analysis Software | nlx_154443 | SCR_009265 | Likelihood Ratio Test Allowing for Errors | 2026-02-15 09:20:09 | 1 | ||||||||
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LOT Resource Report Resource Website |
LOT (RRID:SCR_009261) | LOT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154440 | http://peace.med.yale.edu/pub/LOT/ | SCR_009261 | Linkage analysis of Ordinal Traits | 2026-02-15 09:20:06 | 0 | |||||||
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PROBMAX Resource Report Resource Website 1+ mentions |
PROBMAX (RRID:SCR_009337) | PROBMAX | software application, software resource | Software application for assigning unknown parentage in pedigree analysis from known genotypic pools of parents and progeny (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154550 | SCR_009337 | 2026-02-15 09:20:07 | 1 | |||||||||
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PROC QTL Resource Report Resource Website 1+ mentions |
PROC QTL (RRID:SCR_009338) | PROC QTL | software application, software resource | Software application that is a user defined SAS procedure for mapping quantitative trait loci (QTL). Since this procedure is not a built-in SAS procedure, users need to obtain a copy of the executable file of PROC QTL and install the software in their personal computers before PROC QTL can be executed. Of course, users need a regular SAS license prior to the installation of PROC QTL. Once PROC QTL is installed, it can be called just like any other SAS procedures. Users will not notice the differences between this customized procedure and other built-in SAS procedures. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows | is listed by: Genetic Analysis Software | nlx_154551 | SCR_009338 | 2026-02-15 09:20:01 | 6 | |||||||||
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POWERTRIM Resource Report Resource Website 1+ mentions |
POWERTRIM (RRID:SCR_009333) | POWERTRIM | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11,2023. Software application that automate the decision to remove objects from a pedigree with a minimum loss information (entry from Genetic Analysis Software) | gene, genetic, genomic, perl | is listed by: Genetic Analysis Software | PMID:12677557 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154545 | SCR_009333 | 2026-02-15 09:20:07 | 1 | |||||||
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MLD Resource Report Resource Website |
MLD (RRID:SCR_009298) | MLD | software application, software resource | Software application performing a shuffling version of the exact conditional tests for different combinations of allelic and genotypic disequilibrium on haploid and diploid data, or their combination. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, ms-windows, (95) | is listed by: Genetic Analysis Software | nlx_154489 | SCR_009298 | 2026-02-15 09:20:10 | 0 | |||||||||
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MLBGH Resource Report Resource Website 1+ mentions |
MLBGH (RRID:SCR_009297) | MLBGH | software application, software resource | Software application that is an extension of the GENEHUNTER program to perform sib-pair and sib-ship linkage analysis using the Maximum Likelihood Binomial (MLB) method. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154488 | SCR_009297 | Maximum-Likelihood-Binomial analysis of affected sib-pair and sibship data extended from the GENEHUNTER program | 2026-02-15 09:19:41 | 1 | ||||||||
|
MITPENE Resource Report Resource Website |
MITPENE (RRID:SCR_009294) | MITPENE | software application, software resource | Software program for analysis of mitochondrial diseases (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154485 | SCR_009294 | 2026-02-15 09:20:10 | 0 | |||||||||
|
MKGST Resource Report Resource Website 1+ mentions |
MKGST (RRID:SCR_009295) | MKGST | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154486 | SCR_009295 | including ASP (power calculator for gene mapping using a sibpair design), with given infants or parent-infant duos), child and putative father), MUTPROF/MUTCOMP (comparison of mutation profiles), Michael Krawczak''s Genetics Software Tools, typed at single locus DNA markers, PATERN (calculation of paternity probabilities from the multilocus DNA profiles of trios, comparing specific types of simple hypotheses regarding the familial relationships involved), ASPSHARE (rapid calculation of the expected ibd sharing at the trait locus, FINDSIRE (identify mothers or sires by means of the comparison of a large number of potential parents, EASYPAT (calculation of likelihood ratios for single locus data, comprising mother, based upon the model) | 2026-02-15 09:20:06 | 2 | ||||||||
|
MINIMAC Resource Report Resource Website 100+ mentions |
MINIMAC (RRID:SCR_009292) | MINIMAC | software application, software resource | Software application that is a low memory, computationally efficient implementation of the MaCH algorithm for genotype imputation. It is designed to work on phased genotypes and can handle very large reference panels with hundreds or thousands of haplotypes. The name has two parts. The first, mini, refers to the modest amount of computational resources it requires. The second, mac, is short hand for MaCH, our widely used algorithm for genotype imputation. (entry from Genetic Analysis Software) | gene, genetic, genomic |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools is related to: Michigan Imputation Server |
DOI:10.1038/ng.3656 | nlx_154483, OMICS_08953 | https://sources.debian.org/src/minimac4/ | SCR_009292 | MACH | 2026-02-15 09:20:00 | 187 | ||||||
|
MFLINK Resource Report Resource Website |
MFLINK (RRID:SCR_009290) | MFLINK | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154477 | SCR_009290 | (nearly) model-free linkage analysis | 2026-02-15 09:20:06 | 0 | |||||||
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PLABSIM Resource Report Resource Website |
PLABSIM (RRID:SCR_009328) | PLABSIM | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, (aix), linux, ms-windows, (nt) | is listed by: Genetic Analysis Software | nlx_154536 | SCR_009328 | PLAnt Breeding SIMulation | 2026-02-15 09:20:11 | 0 | ||||||||
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PL-EM Resource Report Resource Website 1+ mentions |
PL-EM (RRID:SCR_009329) | PL-EM | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154537 | SCR_009329 | Partition-Ligation EM algorithm for haplotype inference with single nucleotide polymorphisms | 2026-02-15 09:20:07 | 7 | ||||||||
|
PEER Resource Report Resource Website 500+ mentions |
PEER (RRID:SCR_009326) | PEER | software application, software resource | Software collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods. Applications of PEER have * detected batch effects and experimental confounders * increased the number of expression QTL findings by threefold * allowed inference of intermediate cellular traits, such as transcription factor or pathway activations This project offers an efficient and versatile C++ implementation of the underlying algorithms with user-friendly interfaces to R and python. | gene, genetic, genomic, c++, r, python |
is listed by: Genetic Analysis Software is listed by: OMICtools has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:21283789 PMID:20463871 |
nlx_154532, OMICS_04597 | https://github.com/PMBio/peer/wiki | SCR_009326 | 2026-02-15 09:20:01 | 553 | |||||||
|
PEDSYS Resource Report Resource Website 1+ mentions |
PEDSYS (RRID:SCR_009324) | PEDSYS | software application, software resource | Full-scale database system developed as a specialized tool for management of genetic, pedigree and demographic data. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, (sunos, solaris), ms-dos, macos | is listed by: Genetic Analysis Software | nlx_154530 | SCR_009324 | 2026-02-15 09:20:11 | 1 | |||||||||
|
PEDVIZAPI Resource Report Resource Website |
PEDVIZAPI (RRID:SCR_009325) | PEDVIZAPI | software application, software resource | A Java Api for the visual analysis of large and complex pedigrees that provides all the necessary functionality for the interactive exploration of extended genealogies. Available packages are mostly focused on a static representation or cannot be added to an existing application; the goal of this open-source library is to provide an application program interface that enables the efficient construction of visual analytic applications for the analysis of family based data. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, r | is listed by: Genetic Analysis Software | nlx_154531 | SCR_009325 | PEDigree VIsualiZation API | 2026-02-15 09:20:07 | 0 | ||||||||
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MERLIN Resource Report Resource Website 500+ mentions |
MERLIN (RRID:SCR_009289) | MERLIN | software application, software resource | Software application that carries out single-point and multipoint analyses of pedigree data, including IBD and kinship calculations, nonparametric and variance component linkage analyses, error detection and information content mapping. For multipoint analyses in dense maps, Merlin allows the user to impose constraints on the number of recombinants between consecutive markers. Merlin estimates haplotypes by finding the most likely path of gene flow or by sampling paths of gene flow at all markers jointly. It can also list all possible nonrecombinant haplotypes within short regions. Finally, Merlin provides swap-file support for handling very large numbers of markers as well as gene-dropping simulations for estimating empirical significance levels. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix. linux | is listed by: Genetic Analysis Software | nlx_154475 | SCR_009289 | Multipoint Engine for Rapid Likelihood INference | 2026-02-15 09:20:10 | 910 | ||||||||
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PED Resource Report Resource Website |
PED (RRID:SCR_009320) | PED | software application, software resource | Powerful pedigree drawing program with two drawing modes: Input mode for fast and automatic drawing; edit mode for text annotations, legends, special symbols. Both input and edit mode provide auto numbering, auto resizing of symbols and fonts, and zooming. PED 4.2a complies with the Recommendations for standardized human pedigree nomenclature. Apart from fully sizeable printed output, pedigrees can be exported as metafiles to virtually any Windows word processor or drawing program. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual smalltalk, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154514 | SCR_009320 | PEdigree Drawing software | 2026-02-15 09:20:10 | 0 | ||||||||
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MENDEL Resource Report Resource Website 500+ mentions |
MENDEL (RRID:SCR_009288) | MENDEL | software application, software resource | Software application for genetic analysis of human pedigree data under models involving a small number of loci. MENDEL is useful for segregation analysis, linkage calculations, genetic counseling, allele frequency estimation, and related kinds of problems. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | nlx_154473 | SCR_009288 | 2026-02-15 09:19:41 | 554 |
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