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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Miami Hussman Institute for Human Genomics Genotyping Core Facility Resource Report Resource Website 1+ mentions |
University of Miami Hussman Institute for Human Genomics Genotyping Core Facility (RRID:SCR_017820) | core facility, access service resource, service resource | Core provides services in analyzing genetic variation, performing genome-wide association studies, conducting non-human genotyping. Offers flexible platforms from low to high throughput, tailored to research needs. Specializes in Illumina Genotyping Arrays and TaqMan Allelic Discrimination Assays, with fully automated processing using Tecan EVOs and BioMek liquid handlers and Genologics LIMS for reliable data tracking.Applications include: GWAS – Identify genetic variants linked to traits and diseases; PRS Analysis – Assess genetic risk for complex diseases; Pharmacogenomics – Study genetic factors in drug response; Population Genetics – Explore ancestry and genetic diversity; CNV Analysis – Detect large-scale genomic variations; Methylation Analysis. | Genotyping, data, analysis, epigenetics, methylation, sequencing, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Miami Miller School of Medicine; Florida; USA |
Open | ABRF_596 | https://coremarketplace.org/?FacilityID=596&citation=1 | SCR_017820 | , Genotyping at the CGT, University of Miami Miller School of Medicine Genotyping Core Facility | 2026-02-14 02:08:12 | 1 | |||||||
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Scripps Research Institute - Florida Flow Cytometry Core Facility Resource Report Resource Website |
Scripps Research Institute - Florida Flow Cytometry Core Facility (RRID:SCR_017830) | core facility, access service resource, service resource | Flow cytometry core to measure phenotypic, biochemical and molecular characteristics of individual cells or particles suspended in fluid stream.Flow Cytometry Core on Jupiter, Florida campus of Scripps Research provides services including Cell Sorting, Analytical Cytometry,Data Analysis,Microdissection and Imaging. Hematology services including:Cell Sorting on ARIA: violet, blue, green and red lasers and on FUSION: violet, blue, green and red lasers; Cell Analysis on LSR2: ultra-violet, violet, blue, green and red lasers, GALLIOS: violet, blue, green and red lasers,CANTO: violet, blue and red lasers;Laser Microdissection and Fluorescence Imaging using LEICA LMD 7000;Hematology using HEMAVET 950FS. | Flow, cytometry, phenotypic, cell, particle, sorting, data, analysis, microdissection, imaging, hematology, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_615 | SCR_017830 | Flow Cytometry | 2026-02-14 02:08:05 | 0 | ||||||||
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Nebraska-Lincoln University Center for Virology Bioinformatics Core Facility Resource Report Resource Website |
Nebraska-Lincoln University Center for Virology Bioinformatics Core Facility (RRID:SCR_017793) | core facility, access service resource, service resource | Facility is equipped with high performance computers, bioinformatics related software, biological databases, and data storage. Provides bioinformatics and computational services in virology, molecular biology, genomics, proteomics, next generation high throughput sequencing, and other biological related fields. For special requirements, can design and develop new algorithms, and implement programs and customize data processing pipelines. Core promotes education in bioinformatics to students and researchers, develops and delivers training material, including workshops that facilitate practical application of bioinformatics knowledge by students, postdoctoral fellows, and faculties in NCV community. | Virology, bioinformatics, computer, database, data, storage, develop, algorithm, program, training, service, core | COBRE | Restricted | ABRF_440 | SCR_017793 | Bioinformatics Core at Nebraska Center for Virology | 2026-02-14 02:08:41 | 0 | ||||||||
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Iowa State University Genome Informatics Core Facility Resource Report Resource Website |
Iowa State University Genome Informatics Core Facility (RRID:SCR_017790) | GIF | core facility, access service resource, service resource | Provides help with grant review, information on data management plans,suggestion best practices for bionformatics analyses, advise on experimental design for Next Gen Sequencing (NGS) projects.Services include:Genome assembly and annotation,Transcriptome assembly and annotation,SNP/InDel calling,RNA-Seq analysis,ChiP-seq,Introgression mapping,novel gene discovery,Personalized GBrowse instances for data visualization,Access to high performance computing, Custom big data projects. | Genome, informatics, data, management, analysis, design, grant, service, core | Open | ABRF_422 | SCR_017790 | Genome Informatics Facility | 2026-02-14 02:08:04 | 0 | ||||||||
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University of New England COBRE Histology and Imaging Core Facility Resource Report Resource Website |
University of New England COBRE Histology and Imaging Core Facility (RRID:SCR_017885) | core facility, access service resource, service resource | Core provides access to expertise, training and specialized instrumentation related to tissue processing, sectioning, staining, immunohistochemistry and microscopy. Offers services and training related to image analysis and image analysis software to guide investigators in choosing best methods for presenting their data.Services include Trimming of wet tissues,Tissue processing into paraffin, OCT and paraffin embedding, Sectioning of paraffin-embedded/frozen tissues, Routine and special histochemical staining, Immunohistochemistry/Immunofluorescence, Antibody optimization, Brightfield/ widefield/ confocal microscopy, Image capture and image analysis.Core has cryostats, microtomes and microscopes available for reservation. | Instrumentation, tissue, processing, sectioning, staining, immunochemistry, microscopy, training, expertise, image, analysis, data, trimming, wet, tissue, processing, paraffin, embedding, immunofluorescence, antibody, optimization, microscopy, cryostat, microtome, service, core | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103643 | Open | ABRF_748 | https://coremarketplace.org/?FacilityID=748&citation=1 | SCR_017885 | Histology and Imaging Core | 2026-02-14 02:08:43 | 0 | ||||||
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Florida State University X-Ray Crystallography Core Facility Resource Report Resource Website 1+ mentions |
Florida State University X-Ray Crystallography Core Facility (RRID:SCR_017922) | XRF | core facility, access service resource, service resource | Shared macromolecular x-ray crystallography facility provides instruments and expertise for screening, optimizing, imaging, growing, and storing crystals of biological macromolecules. The X-Ray Facility coordinates single crystal x-ray diffraction data collection at third generation synchrotron x-ray source using FSU's membership at the National Synchrotron Light Source II at Brookhaven National Lab, Upton, NY. XRF also offers custom buffer preparation, optimization, and crystal set-up using multi-well format crystallization blocks and plates.XRF has ARI Crystal Gryphon robot, Formulatrix Rock Imager, Formulator 16, Rock Maker software, RUMED incubator, Cryo storage and shipping dewars, Leica S8 AP0 Zoom microscope and other amenities. | Macromolecular, X-ray, crystallography, instrument, expertise, collecting, processing, diffraction, data, single, crystal, protein, screeing, service, core |
is listed by: ABRF CoreMarketplace has parent organization: Florida State University; Florida; USA |
Restricted | ABRF_815 | https://coremarketplace.org/?FacilityID=815 | http://biophysics.fsu.edu/facilities/x-ray-facility/ | SCR_017922 | X-Ray Crystallography Facility | 2026-02-14 02:08:14 | 1 | |||||
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Kansas University Medical Center Hoglund Brain Imaging Center Core Facility Resource Report Resource Website |
Kansas University Medical Center Hoglund Brain Imaging Center Core Facility (RRID:SCR_017920) | HBIC | core facility, access service resource, service resource | Core provides imaging capabilities, including magnetic resonance imaging, magnetoencephalolgraphy, electroencephalography, magnetocardiography, and ultrasound,expertise in cognitive neuroscience, neurobiology, biomedical physics, and computing, together with support team of technologists, nurses, research associates, and research assistants. Through strong collaborations, these individuals assist with study design, collection of data, analysis, and interpretation of results. HBIC supports investigators with new technique development, feasibility studies, pilot funding, preparing grant applications and manuscripts, and compliance. Carries out investigator-initiated research and research/clinical trials sponsored by public and private agencies. Offers education and training. | Imaging, magnetic, resonance, magnetoencephalography, electroencephalography, magnetocardiography, ultrasound, cognitive, neuroscience, neurobiology, biomedical, physics, computing, data, collection, analysis, training, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_807 | SCR_017920 | Hoglund Brain Imaging Center | 2026-02-14 02:08:07 | 0 | |||||||
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Purdue University Bioinformatics Core Facility Resource Report Resource Website |
Purdue University Bioinformatics Core Facility (RRID:SCR_017896) | core facility, access service resource, service resource | Core to facilitate, amplify, and accelerate biological research and discovery through application of bioinformatics. Provides bioinformatic analysis services for Next Generation Sequencing (NGS) data. | Bioinformatic, support, analysis, next, generation, sequencing, data, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_760 | SCR_017896 | Bioinformatics Core | 2026-02-14 02:08:14 | 0 | ||||||||
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Massachusetts Institute of Technology Koch Institute Bioinformatics and Computing Core Facility Resource Report Resource Website |
Massachusetts Institute of Technology Koch Institute Bioinformatics and Computing Core Facility (RRID:SCR_017894) | core facility, access service resource, service resource | Core provides support, assistance and training in wide range of bioinformatics topics. Maintains high-performance computing resource offering many bioinformatics applications, substantial processing power and secure storage. Provides support for desktop computing and poster printing. Services include Data Analysis, Software Support (access to proprietary bioinformatics resources Ingenuity Pathway Analysis and GeneGO MetaCore, Training sessions covering various bioinformatics topics, Linux compute cluster, data storage. | Bioinformatics, support, training, data, analysis, storage, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Restricted | SCR_017155, ABRF_769 | https://coremarketplace.org/?FacilityID=769 | SCR_017894 | Barbara K. Ostrom Bioinformatics Facility, The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility | 2026-02-14 02:08:06 | 0 | |||||||
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Loyola University Genomics Core Facility Resource Report Resource Website |
Loyola University Genomics Core Facility (RRID:SCR_017857) | LGF | core facility, access service resource, service resource | Core provides next-generation sequencing capabilities using Illumina MiSeq. Helps with experimental design, quality control analysis, library preparation, and data analysis. MiSeq desktop sequencer allows to access applications such as targeted gene sequencing, metagenomics, small genome sequencing, targeted gene expression, amplicon sequencing, and HLA typing.MiSeq is capable of delivering up to 15 Gb of output with 25 million sequencing reads and 2x300 basepair read lengths. | Next, generation, sequencing, Illumina MiSeq, experimental, design, quality, control, analysis, library, preparation, data, targeted, gene, metagenomics, genome, expression, amplicon, HLA, typing, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_678 | SCR_017857 | Loyola Genomics Facility | 2026-02-14 02:08:13 | 0 | |||||||
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University of California at San Francisco, Nikon Imaging Center Core Facility Resource Report Resource Website 1+ mentions |
University of California at San Francisco, Nikon Imaging Center Core Facility (RRID:SCR_017862) | core facility, access service resource, service resource | Core provides light microscopy instrumentation, microscopy training and education and can provide assistance with experiment design, data acquisition, and image analysis. Provides training for users.Services include:Fluorescence imaging (up to 5 colors) Brightfield, phase contrast, and DIC imaging;High speed imaging (over 100 frames per second);Automated imaging, including multiwell plates;Super-resolution imaging (SIM / STORM / PALM);Single molecule imaging;3D confocal imaging;Gigapixel image stitching;Live cell time lapse imaging;Photoactivation and photobleaching;Light sheet imaging of cleared tissues. | Light, microscopy, training, education, support, experiment, design, data, acquisition, iamge, analysis, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_680 | SCR_017862 | Nikon Imaging Center at UCSF | 2026-02-14 02:08:43 | 1 | ||||||||
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Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility (RRID:SCR_017911) | MRL | core facility, access service resource, service resource | Core facility that conducts fee for service mass spectrometry-based non-targeted and targeted metabolomic studies. The facility serves and partners with both on- and off-campus clients. | Metabolomics, Non-targeted, Metabolite Profiling, Targeted Metabolomics, mass spectrometry imaging, direct infusion, HPLC, calillary, electrophoresis, data, analysis, service, core |
is listed by: ABRF CoreMarketplace has parent organization: Iowa State University; Iowa; USA |
Open | ABRF_796 | https://coremarketplace.org/?FacilityID=796&citation=1 | SCR_017911 | Iowa State University Metabolomics Research Laboratory, Iowa State University W.M. Keck Metabolomics Research Laboratory, W. M. Keck Metabolomics Research Laboratory | 2026-02-14 02:08:43 | 9 | ||||||
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loom-viewer Resource Report Resource Website |
loom-viewer (RRID:SCR_016683) | data visualization software, software resource, data processing software, software application | Software tool for sharing, browsing and visualizing single-cell data stored in the Loom file format. | sharing, browsing, visualizing, single, cell, data, stored, Loom, file, format | works with: LoomPy | Free, Available for download, Freely available | SCR_016683 | 2026-02-14 02:04:53 | 0 | ||||||||||
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MRIcron Resource Report Resource Website 1000+ mentions |
MRIcron (RRID:SCR_002403) | MRIcron | data visualization software, software resource, data processing software, software application | Software tool as a cross-platform NIfTI format image viewer. Used for viewing and exporting of brain images. MRIcroGL is a variant of MRIcron. | NIfTI, format, image, viewer, exporting, brain, image, processing, data, bio.tools |
is used by: XFSL: An FSL toolbox is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: neurodebian is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: Colour maps for brain imaging has parent organization: University of South Carolina; South Carolina; USA |
PMID:17583985 PMID:11568431 |
BSD License | biotools:MRIcron, nif-0000-00122 | https://sources.debian.org/src/mricron/ http://www.mccauslandcenter.sc.edu/mricro/ http://www.nitrc.org/projects/mricron http://neuro.debian.net/pkgs/mricron.html https://bio.tools/MRIcron |
SCR_002403 | mricron - magnetic resonance image conversion viewing and analysis | 2026-02-14 02:05:07 | 2194 | |||||
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Human Tumor Atlas Network Resource Report Resource Website 10+ mentions |
Human Tumor Atlas Network (RRID:SCR_023364) | HTAN | portal, data or information resource, atlas, disease-related portal, topical portal | HTAN is National Cancer Institute funded Cancer Moonshot initiative to construct 3-dimensional atlases of dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease.Provides three dimensional atlases of cancer transitions for diverse set of tumor types. Efforts to map healthy organs and previous large-scale cancer genomics approaches focused on bulk sequencing at single point in time. Data portal for Human Tumor Atlas Network. Data available on HTAN Portal is open access. Certain data types with potential for re-identification are available in restricted access through dbGAP. | Three dimensional atlases, cancer transitions, diverse set of tumor types, map healthy organs, cancer genomics approaches, bulk sequencing at single point in time, data, precancerous lesions to advanced disease, | cancer | National Cancer Institut Cancer Moonshot Initiative | PMID:32302568 | Free, Freely available | SCR_023364 | 2026-02-14 02:05:10 | 27 | |||||||
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Charite University and Berlin Institute for Health Research Central Biobank Core Facility Resource Report Resource Website |
Charite University and Berlin Institute for Health Research Central Biobank Core Facility (RRID:SCR_023495) | ZeBanC | material storage repository, storage service resource, core facility, biobank, service resource, access service resource | Integrated healthcare biobank that operates under certified conditions and strict SOPs. Enables biomedical and translational researchers to perform their analyses using high quality biospecimens and data to generate reliable and reproducible research data. Core offers modular biobanking portfolio that can cover workflow from blood collection to storage, including all pre-analytical steps and their documentation. Offers spectrum of additional services ranging from DNA/RNA extraction and virtual microscopy to entire management of sample and data flow for national and international research consortia. Provides secure conventional and automated storage of samples at various temperatures as well as secure data management. | USEDit, ABRF, integrated healthcare biobank, biobank, biospecimens, data, data management, data storage, blood collection, DNA/RNA extraction, virtual microscopy |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
Open | ABRF_563 | https://coremarketplace.org/?FacilityID=563&citation=1 | SCR_023495 | , Charite/BIH (ZeBanC), Charite - Central Biobank Charite/BIH (ZeBanC), Central Biobank of the Charite | 2026-02-14 02:05:06 | 0 | ||||||
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NIDDK Research Resources Resource Report Resource Website |
NIDDK Research Resources (RRID:SCR_014372) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Registry listing NIDDK resources, such as reagents, data, and protocols. They are derived from publicly available information provided by NIDDK-funded investigators, projects, and publications. | research, registry, diabetes, kidney disease, reagent, data, protocol |
lists: NIDDK Information Network (dkNET) lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION) lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT) lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms) lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS) lists: Nephrotic Syndrome Study Network (NEPTUNE) lists: CKD Biomarkers Consortium lists: Porphyria Consortium lists: Vitamin D to Prevent Type 2 Diabetes (D2d) lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) lists: Integrated Islet Distribution Program (IIDP) lists: Rare Kidney Stone Consortium (RKSC) lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Intestinal Stem Cell Consortium lists: RiVuR lists: Gastroparesis Clinical Research Consortium lists: Urologic Diseases in America lists: United States Renal Data System lists: HALT PKD lists: Chronic Renal Insufficiency Cohort Study lists: HEALTHY study lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: HALT-C Trial lists: TRIGR lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: Study of Nutrition in Acute Pancreatitis lists: SEARCH for Diabetes in Youth lists: Organ Procurement and Transplantation Network lists: Nuclear Receptor Signaling Atlas lists: NIH Common Fund lists: Mutant Mouse Resource and Research Center lists: GenitoUrinary Development Molecular Anatomy Project lists: National Mouse Metabolic Phenotyping Centers lists: IPD-MHC- Major Histocompatibility Complex lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis lists: Hepatitis B Research Network lists: Functional Dyspepsia Treatment Trial lists: Cooperative Study Group for Autoimmune Disease Prevention lists: Clinical Outcomes Research Initiative lists: BISC lists: The Immunology Database and Analysis Portal (ImmPort) lists: Beta Cell Biology Consortium lists: Autoimmunity Centers of Excellence lists: HemBase lists: Longitudinal Assessment of Bariatric Surgery lists: Minnesota Liver Tissue Cell Distribution System lists: Knockout Mouse Project lists: Immune Tolerance Network (ITN) lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain is listed by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Diabetes, Kidney disease | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014372 | National Institute of Diabetes and Digestive and Kidney Diseases Research Resources | 2026-02-14 02:06:51 | 0 | ||||||||
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Grid-Enabled Measures Database Resource Report Resource Website 1+ mentions |
Grid-Enabled Measures Database (RRID:SCR_016043) | GEM | data or information resource, database | Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data. | behavior, social, data, research, data sharing, exchange | NCI Y01 C16006001 | PMID:21521586 | Freely available | SCR_016043 | GEM Database | 2026-02-14 02:06:53 | 1 | |||||||
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CATALYSTLite Resource Report Resource Website |
CATALYSTLite (RRID:SCR_017126) | data analysis service, production service resource, service resource, analysis service resource | Software tool as interactive Shiny web application that provides user interface to mass cytometry data processing pipeline implemented in CATALYST R Bioconductor package. | interactive, Shiny, website, application, interface, mass, cytometry, data, processing, pipeline |
is used by: CATALYST is related to: Bioconductor has parent organization: University of Zurich; Zurich; Switzerland |
Free, Freely available | SCR_017126 | 2026-02-14 02:06:54 | 0 | ||||||||||
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Genes, Genome Features and Maps Resource Report Resource Website 1+ mentions |
Genes, Genome Features and Maps (RRID:SCR_017524) | data or information resource, database | Searchable database of mouse genes, DNA segments, cytogenetic markers and QTLs. MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models. | Data, mouse, gene, DNA, segment, cytogenetic, marker, MGI, genome, feature, sequenced, genomic, map, expression, disease, model | Free, Freely available | SCR_017524 | 2026-02-14 02:06:32 | 5 |
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