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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GDA Resource Report Resource Website 10+ mentions |
GDA (RRID:SCR_009187) | GDA | software resource, software application | Software application designed to accompany the second edition of Bruce Weir''s book Genetic Data Analysis (1996. Sinauer Associates) (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (3.1/95/nt), macos, (10.2.8/10.3) | is listed by: Genetic Analysis Software | nlx_154326 | SCR_009187 | Genetic Data Analysis | 2026-02-14 02:07:09 | 18 | ||||||||
|
HAPBLOCK Resource Report Resource Website 1+ mentions |
HAPBLOCK (RRID:SCR_009220) | HAPBLOCK | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154375 | SCR_009220 | a dynamical programming algorithm for haplotype block partitioning | 2026-02-14 02:07:15 | 6 | ||||||||
|
GAS Resource Report Resource Website 10+ mentions |
GAS (RRID:SCR_009184) | GAS | software resource, software application | Software application for statistical analysis of genetic linkage data, sib-pair analysis, association studies (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos, unix, (sunos/solaris/aix/osf1/ultrix/sgi-irix), vms | is listed by: Genetic Analysis Software | nlx_154322 | SCR_009184 | Genetic Analysis System | 2026-02-14 02:07:15 | 43 | ||||||||
|
GAIA Resource Report Resource Website 100+ mentions |
GAIA (RRID:SCR_009182) | GAIA | software resource, software application | Web-based application for testing for locus-locus interaction using genetic association. It is based upon the case-control study design and is designed so that non-specialists may routinely apply tests for interaction. GAIA allows simple testing of both additive and additive plus dominance interaction models and includes permutation testing to appropriately correct for multiple testing. The application is useful for both candidate gene based studies and genome-wide association studies. For large scale studies GAIA includes a screening approach which prioritizes loci for further interaction analysis. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, perl, r, web-based | is listed by: Genetic Analysis Software | DOI:10.1186/1471-2350-7-34 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154320 | http://www.bbu.cf.ac.uk/html/research/biostats.htm | SCR_009182 | Genetic Association Interaction Analysis | 2026-02-14 02:07:09 | 182 | |||||
|
LOGINSERM ESTIHAPLO Resource Report Resource Website |
LOGINSERM ESTIHAPLO (RRID:SCR_009258) | LOGINSERM_ESTIHAPLO | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154437 | SCR_009258 | 2026-02-14 02:06:48 | 0 | |||||||||
|
LNKTOCRI Resource Report Resource Website |
LNKTOCRI (RRID:SCR_009256) | LNKTOCRI | software resource, software application | Software application for conversion of LINKAGE format data files to CRI-MAP format (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, unix, ms-dos | is listed by: Genetic Analysis Software | nlx_154433 | SCR_009256 | 2026-02-14 02:07:03 | 0 | |||||||||
|
LINKBASE Resource Report Resource Website |
LINKBASE (RRID:SCR_009254) | LINKBASE | software resource, software application | An easy and practical database-program made for researchers who want to connect the genotype data produced by automatic sequencers ( ABI Prism 377 (Perkin Elmer) and ALF (Pharmacia) ) to linkage and sib-pair programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi 1.0, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154431 | SCR_009254 | 2026-02-14 02:06:48 | 0 | |||||||||
|
LIPED Resource Report Resource Website 1+ mentions |
LIPED (RRID:SCR_009255) | LIPED | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-windows | is listed by: Genetic Analysis Software | nlx_154432 | SCR_009255 | Likelihoods in Pedigrees | 2026-02-14 02:07:10 | 5 | ||||||||
|
J/QTL Resource Report Resource Website 10+ mentions |
J/QTL (RRID:SCR_009250) | J/QTL | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A Java GUI for the popular QTL data analysis software R/QTL that provides a flexible and powerful working environment for users to perform a variety of tasks. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154418 | SCR_009250 | 2026-02-14 02:06:48 | 26 | ||||||||
|
JPSGCS Resource Report Resource Website 1+ mentions |
JPSGCS (RRID:SCR_009249) | JPSGCS | software resource, software application | Software application to address problems in statistical genetics; however, they include several programs and packages that may be more generally useful, for instance, programs to draw and manipulate graphs, simulation programs, and programs to estimate graphical models. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, linux, macos, ms-windows | is listed by: Genetic Analysis Software | nlx_154417 | SCR_009249 | Java Programs for Statistical Genetics and Computational Statistics GENEPI.JAR | 2026-02-14 02:07:16 | 1 | ||||||||
|
NOPAR Resource Report Resource Website 1+ mentions |
NOPAR (RRID:SCR_009246) | NOPAR | software resource, software application | Software application for non-parametric linkage and association tests primarily for a quantitative trait (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, (sunos) | is listed by: Genetic Analysis Software | nlx_154414 | SCR_009246 | 2026-02-14 02:06:48 | 1 | |||||||||
|
HTR Resource Report Resource Website 1+ mentions |
HTR (RRID:SCR_009241) | HTR | software resource, software application | Software application for haplotype association mapping using unrelated individuals; fixed and sliding window analysis; overall tests and tests for individual haplotype effects (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, bash shell, ms-windows, unix, solaris, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154402, biotools:htr | https://bio.tools/htr | SCR_009241 | Haplotype Trend Regression | 2026-02-14 02:07:16 | 1 | |||||||
|
MAPL Resource Report Resource Website 10+ mentions |
MAPL (RRID:SCR_009278) | MAPL | software resource, software application | Software programs that allow a user to get results on segregation ratio, linkage test, recombination value, grouping of markers, ordering of markers by metric multidimensional scaling, drawing map and graphical genotype. ALso QTL analysis by interval mapping and ANOVA are possible. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic, (v5, professional), ms-windows, (95/98) | is listed by: Genetic Analysis Software | nlx_154459 | SCR_009278 | MAPping and QTL analysis | 2026-02-14 02:07:17 | 15 | ||||||||
|
MAPDRAW Resource Report Resource Website 50+ mentions |
MAPDRAW (RRID:SCR_009276) | MAPDRAW | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that draws genetic linkage maps on PC same as what MAPMAKER does on Mac. (entry from Genetic Analysis Software) | gene, genetic, genomic, microsoft visual basic, excel macro, ms-windows | is listed by: Genetic Analysis Software | PMID:15639879 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154457 | SCR_009276 | 2026-02-14 02:07:11 | 98 | |||||||
|
MIDAS Resource Report Resource Website 100+ mentions |
MIDAS (RRID:SCR_009274) | MIDAS | software resource, software application | Software application for analysis and visualisation of interallelic disequilibrium between multiallelic markers (entry from Genetic Analysis Software) | gene, genetic, genomic, python, ms-windows, (2000/xp), linux, macos | is listed by: Genetic Analysis Software | nlx_154479 | SCR_009274 | Multiallelic Interallelic Disequilibrium Analysis Software | 2026-02-14 02:07:17 | 314 | ||||||||
|
MAPCHART Resource Report Resource Website 1000+ mentions |
MAPCHART (RRID:SCR_009273) | MAPCHART | software resource, software application | Software application that produces charts of genetic linkage and QTL data. The charts are composed of a sequence of vertical bars representing the linkage groups or chromosomes. On these bars the positions of loci are indicated, and next to the bars QTL intervals and QTL graphs can be shown. MapChart reads the linkage information (i.e. the locus and QTL names and their positions) from text files. Many options to adapt the charts to different purposes. Can produce graphic files (enhanced windows metafile format) which can be enhanced with other MS-Windows software. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windows, (95/98/me/nt4.0/2000) | is listed by: Genetic Analysis Software | nlx_154454 | SCR_009273 | Windows software for the graphical presentation of linkage maps and QTLs | 2026-02-14 02:07:03 | 1380 | ||||||||
|
MAMA Resource Report Resource Website 50+ mentions |
MAMA (RRID:SCR_009270) | MAMA | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, web-based | is listed by: Genetic Analysis Software | nlx_154450 | SCR_009270 | Multivariate Association Mapping Algorithms | 2026-02-14 02:07:17 | 95 | ||||||||
|
MADMAPPER Resource Report Resource Website 10+ mentions |
MADMAPPER (RRID:SCR_009267) | MADMAPPER | software resource, software application | Suite of Python scripts for quality control of genetic markers, group analysis and inference of linear order of markers on linkage groups. MadMapper_RECBIT analyses raw marker scores for recombinant inbred lines. MadMapper_RECBIT generates pairwise distance scores for all markers, clusters based on pairwise distances, identifies genetic bins, assigns new markers to known linkage groups, validates allele calls, and assigns quality classes to each marker based on several criteria and cutoff values. MadMapper_XDELTA utilizes new algorithm, Minimum Entropy Approach and Best-Fit Extension, to infer linear order of markers. MadMapper_XDELTA analyzes two-dimensional matrices of all pairwise scores and finds best map that has minimal total sum of differences between adjacent cells (map with lowest entropy). MadMapper is freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154447 | SCR_009267 | 2026-02-14 02:06:48 | 13 | |||||||||
|
Marker And Gene Interpolation and Correlation Resource Report Resource Website 10+ mentions |
Marker And Gene Interpolation and Correlation (RRID:SCR_009268) | MaGIC | software resource, software application | Software program to generate targeted marker sets for genome-wide association studies. | gene, genetic, genomic, microsoft visual foxpro, windows |
is listed by: Genetic Analysis Software has parent organization: King's College London; London; United Kingdom |
PMID:15597550 | Free, Public | nlx_154448 | SCR_009268 | Marker And Gene Interpolation and Correlation | 2026-02-14 02:07:11 | 10 | ||||||
|
LTSOFT Resource Report Resource Website 1+ mentions |
LTSOFT (RRID:SCR_009266) | LTSOFT | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A software suite designed to more powerfully leverage clinical-covariates such as age, bmi, smoking status, and gender when conducting case-control association studies. Including these covariates in standard regression models is not only suboptimal, but can in many instances reduce power. LTSOFT employs a liability threshold model approach that takes advantage of known epidemiological results to better model the covariates'' relationship to the phenotype of interest (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154445 | SCR_009266 | 2026-02-14 02:07:16 | 3 |
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