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http://purl.bioontology.org/ontology/NMOSP_1_6

Species taxonomy for the data curated in NeuroMorpho.Org. The existing ontologies are re-used as needed as the new metadata information for species and strains is deposited in NeuroMorpho.Org database. This species hierarchy consists of 56% of NCBI taxonomy and 39% of Rat strain ontology. The remaining 5% mostly consists of new concepts and few others from NIFSTD and MESH.

Proper citation: NeuroMorpho.Org species ontology old (RRID:SCR_010379) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PPIO

A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.

Proper citation: Protein-Protein Interaction Ontology (RRID:SCR_010413) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PROPREO

A comprehensive proteomics data and process provenance ontology.

Proper citation: Proteomics Data and Process Provenance Ontology (RRID:SCR_010414) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PROVO

Ontology that expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2) providing a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains.

Proper citation: Provenance Ontology (RRID:SCR_010415) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/QIBO

An ontology that describes various concepts in quantitative imaging biomarkers.

Proper citation: Quantitative Imaging Biomarker Ontology (RRID:SCR_010417) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NONRCTO

Ontology to help the systematic review and meta-analysis process of non randomized clinical trials.

Proper citation: Non-Randomized Controlled Trials Ontology (RRID:SCR_010380) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NCCO

Ontology that contains activities that nurses use while coordinating care among patients.

Proper citation: Nursing Care Coordination Ontology (RRID:SCR_010381) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTOKBCF

An ontological knowledge base model for cystic fibrosis. There are molecular genetic information (i.e. gene mutations) and health information included in OntoKBCF. The purposes of OntoKBCF include management of molecular genetic information and health information and embedding OntoKBCF into EHR settings.

Proper citation: Ontological Knowledge Base Model for Cystic Fibrosis (RRID:SCR_010382) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OGDI

Ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) .

Proper citation: Ontology for Genetic Disease Investigations (RRID:SCR_010385) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IMMDIS

Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc.

Proper citation: Immune Disorder Ontology (RRID:SCR_010344) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/InterNano

A custom-built terminology to describe the nanomanufacturing enterprise.

Proper citation: InterNano Nanomanufacturing Taxonomy (RRID:SCR_010346) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/INO

An ontology in the domain of interaction network that aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It is aimed to represent general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO was initiated by supporting literature mining related to interactions and interaction networks. INO aligns with BFO. INO is a community-based ontology, and its development follows the OBO Foundry principles.

Proper citation: Interaction Network Ontology (RRID:SCR_010347) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICD10

Ontology of the International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva, a medical classification list by the World Health Organization (WHO).

Proper citation: International Classification of Diseases Version 10 (RRID:SCR_010349) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICD10PCS

Ontology of the International Classification of Diseases Version 10, ICD-10-PCS (Procedure Coding System), 2009.

Proper citation: International Classification of Diseases Version 10 - Procedure Coding System (RRID:SCR_010351) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONL-MR-DA

Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeneous resources in neuroimaging. In particular, it includes a multi-axial classification of MR sequences.

Proper citation: MR dataset acquisition (RRID:SCR_010352) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MEO

Ontology for organismal habitats (especially focused on microbes)

Proper citation: Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MIXSCV

Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists.

Proper citation: Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GRO

Ontology that is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of).

Proper citation: Gene Regulation Ontology (RRID:SCR_010590) Copy   

•   Source: SciCrunch Registry

https://www.ebi.ac.uk/chebi/beta/

Collection of chemical compounds and other small molecular entities that incorporates an ontological classification of chemical compounds of biological relevance, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms.

Proper citation: CHEBI (RRID:SCR_002088) Copy   

•   Source: SciCrunch Registry