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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Nevada at Reno Nevada Proteomics Center Core Facility Resource Report Resource Website 1+ mentions |
University of Nevada at Reno Nevada Proteomics Center Core Facility (RRID:SCR_017761) | access service resource, core facility, service resource | Core offers mass spectral proteomic analysis. Assists with qualitative and quantitative characterization of proteins in biological matrices such as plasma/serum, tissue, cell lines and other biological material to gain understanding of physiological pathways, molecular interactions and regulatory signaling. | Mass, spectral, proteomic, analysis, qualitative, quantitative, protein, plasma, serum, tissue, cell, line, physiological, pathway, interaction, signaling, stury, service, core |
is listed by: ABRF CoreMarketplace has parent organization: University of Nevada at Reno; Nevada; USA |
NIGMS P20 GM103440 | Open | SCR_011043, SciEx_9701, ABRF_281 | https://coremarketplace.org/?FacilityID=281&citation=1 | SCR_017761 | Mick Hitchcock, Ph.D. Nevada Proteomics Center | 2026-02-15 09:21:26 | 6 | ||||||
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Virginia Commonwealth University Chemical and Proteomic Mass Spectrometry Core Facility Resource Report Resource Website |
Virginia Commonwealth University Chemical and Proteomic Mass Spectrometry Core Facility (RRID:SCR_017806) | CPMSC | access service resource, core facility, service resource | Core provides mass spectrometric services, from basic mass measurement to complex proteome analyses.Services include basic mass measurement, ESI-MS/MS,LC-MS,Exact mass measurement,Protein identification. | Mass, spectrometry, measurement, proteome, analysis, protein, identification, service, core | Open | ABRF_515 | SCR_017806 | Chemical and Proteomic Mass Spectrometry Core Facility | 2026-02-15 09:21:27 | 0 | ||||||||
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Texas University Health Science Center at San Antonio Biomolecular NMR Core Facility Resource Report Resource Website |
Texas University Health Science Center at San Antonio Biomolecular NMR Core Facility (RRID:SCR_017775) | access service resource, core facility, service resource | Core offers high field NMR instrumentation for structural studies of biological macromolecules. Instrumentation includes four-channel Bruker Avance 500, 600, and 700 MHz NMR spectrometers, ultra high sensitivity 5mm 1H-13C-15N triple-resonance cold probe for 600 MHz spectrometers. Service include acquisition and analysis of required spectra for elucidation of small molecule structures (includes synthetic molecules, natural products, cofactors, lipids, and short peptides (30 amino acids or less)). Types of projects conducted collaboratively include determination of three-dimensional structures of biological macromolecules, including proteins and nucleic acids, both alone and as complexes with various ligands. | Biomolecular, NMR, structural, study, macromolecule, spectrometry, acquisition, analysis, spectra, small, molecule, structure, lipid, peptide, cofactor, protein, nucleic acid, ligand, service, core | NIH National Center for Research Resources ; Houston Endowment ; UT Health San Antonio Children Cancer Research Center ; U. Texas Permanant University Fund ; UT Health San Antonio MD Anderson Cancer Center ; UT Health San Antonio Core Facilities Committee ; User Fees |
ABRF_353 | SCR_017775 | Biomolecular NMR Core | 2026-02-15 09:22:15 | 0 | |||||||||
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Saint Louis University School of Medicine Protein Core Facility Resource Report Resource Website |
Saint Louis University School of Medicine Protein Core Facility (RRID:SCR_017811) | access service resource, core facility, service resource | Core facility that supports expression, purification, and analysis of reagent and preclinical proteins by providing instrumentation and consultation for protein production from small to large scale. Available equipment includes shaking incubators, 5 L fermentor, high pressure cell disruptor, hollow fiber concentrator, Maxwell16 magnetic bead purification system, AKTA Purifier chromatograph, analytical ultracentrifuge, analytical HPLC, and MALDI-QIT-TOF mass spectrometer. | Protein, expression, purification, analysis, reagent, preclinical, production, HPLC, mass, spectrometer, service, core | Open | ABRF_564 | SCR_017811 | Protein Core Facility | 2026-02-15 09:22:16 | 0 | |||||||||
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MIT KIICR Biopolymers and Proteomics Core Facility Resource Report Resource Website 1+ mentions |
MIT KIICR Biopolymers and Proteomics Core Facility (RRID:SCR_017737) | access service resource, core facility, service resource | Facility provides integrated synthetic and analytical capabilities for biological materials, including proteins, peptides, and nanoparticles, range of technical expertise and instrumentation. Access is available to all members of MIT community. Priority access is given to KI members, NCI-funded research projects and other contributing user groups in recognition of funding support. In special circumstances, access may be available to non-MIT users. | Synthetic, analytical, bioplymer, protein, peptide, nanoparticles, technical, expertise, instrumentation, MIT, service, core | National Cancer Institute Cancer Center Support Grant | Restricted | ABRF_213 | SCR_017737 | KI Swanson Biotechnology Center Biopolymers and Proteomics Core Facility | 2026-02-15 09:21:25 | 1 | ||||||||
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Zurich University Functional Genomics Center Core Facility Resource Report Resource Website |
Zurich University Functional Genomics Center Core Facility (RRID:SCR_017742) | FGCZ | access service resource, core facility, service resource | Laboratory performs services in proteomics, genomics and metabolomics by FGCZ personnel without need for user to access labs. Services include Proteomics:Protein identification,quantification,characterization,Glycan/glycoprotein analyses, Analysis of Biomolecules, Fractionation; Genomics:DNA sequencing, RNA sequencing; Metabolomics/Biophysics services. | Proteomics, genomics, metabolomics, protein, identification, quantification, characterization, glycan, glycoprotein, ananlysis, biomolecule, fractionation, genomics, DNA, RNA, sequencing, metabolomics, biophysics, service, core | ABRF_204 | SCR_017742 | Functional Genomics Center Zurich | 2026-02-15 09:22:13 | 0 | |||||||||
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Kansas University at Lawrence Protein Production Group Core Facility Resource Report Resource Website |
Kansas University at Lawrence Protein Production Group Core Facility (RRID:SCR_017749) | PPG | access service resource, core facility, service resource | Core focuses on cloning, expression and purification of prokaryotic and eukaryotic proteins for COBRE and other investigators in Kansas and region. Laboratory maintains equipment to support production of properly folded proteins in quantities suitable for structural studies (X-ray and NMR), functional studies (catalytic or biological), label-free binding studies (SPR) and/or high throughput (HTP) screening studies. | Protein, production, purification, expression, cloning, service, core | NCRR P20 RR017708; NIGMS P20 GM103420; NIGMS P30 GM110761 |
Open | ABRF_249 | SCR_017749 | KU COBRE Protein Production Group | 2026-02-15 09:21:25 | 0 | |||||||
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Kansas University at Lawrence Applied Bioinformatics Laboratory Core Facility Resource Report Resource Website |
Kansas University at Lawrence Applied Bioinformatics Laboratory Core Facility (RRID:SCR_017751) | ABL | access service resource, core facility, service resource | Research oriented service laboratory providing informatics support to research community. Services include data analysis and mining in proteomics, genomics and chemistry, systems biology approaches such as pathway, network and interaction analyses, large scale statistical and machine learning studies, protein structure, function and stability prediction, sequence and domain analyses,d esign and implementation of relational databases and software programs, consultation on experimental design involving data acquisition, management and analysis, report, grant, and manuscript preparation. | Data, analysis, mining, pathway, network, interaction, prediction, protein, structure, function, stability, sequence, domain, acquisition, management, report, grant, manuscript, service, core | Open | ABRF_252 | SCR_017751 | Molecular Graphics and Modeling Laboratory | 2026-02-15 09:22:07 | 0 | ||||||||
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University of Texas MD Anderson Cancer Center Proteomics Core Facility Resource Report Resource Website |
University of Texas MD Anderson Cancer Center Proteomics Core Facility (RRID:SCR_017731) | access service resource, core facility, service resource | Facility provides mass spectrometry analysis of proteins. Provides access to mass spectrometry based proteomics technologies and services including Protein Identification, Molecular Weight Determination, Quantitative Protein Analysis, Post-translational Modification Analysis, LC or LC-MS Analysis, Equipment Usage, Additional Data Analysis:Bioinformatics, statistics, pathway analysis and Assistance preparing materials for manuscripts or grants.Consultations for custom assays for other MS Services are also available. | Mass, spectrometry, analysis, protein, proteomics, service | NCI P30 CA016672; NIH Office of the Director S10 OD012304 |
Open | ABRF_186 | SCR_017731 | Proteomics Facility | 2026-02-15 09:22:06 | 0 | ||||||||
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Maine Medical Center Research Institute Proteomics and Lipidomics Analysis Core Facility Resource Report Resource Website |
Maine Medical Center Research Institute Proteomics and Lipidomics Analysis Core Facility (RRID:SCR_017730) | access service resource, core facility, service resource | Core provides protein and small molecule structural and functional analysis, and quantitation using technologies and software applications. Services in Nano-liquid chromatography,Protein identification and quantitation using SWATH,Protein post translational modification identification,Lipid profiling and identification (MS/MSALL),Targeted multiple reaction monitoring (MRM) for lipids. | Protein, small, molecule, structural, functional, analysis, quantitation, nano, liquid, chromatography, lipid, SWATH | Vascular Biology Center of Biomedical Research Excellence (COBRE) Program | Restricted | ABRF_170 | SCR_017730 | MMRC Proteomics and Lipidomics Analysis | 2026-02-15 09:22:13 | 0 | ||||||||
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Kansas University Medical Center Mass Spectrometry/Proteomics Core Facility Resource Report Resource Website |
Kansas University Medical Center Mass Spectrometry/Proteomics Core Facility (RRID:SCR_017818) | MSPCL | access service resource, core facility, service resource | Core provides access to mass spectrometry based proteomics applications, customizes mass spectrometry designs that fit individual needs. Used for general proteomics evaluations and protein identification designs, quantitation techniques, hydrogen/deuterium exchange, and oxidative footprinting. Equipment includes Orbitrap Fusion Lumos. | Mass, spectrometry, proteomics, design, evaluation, protein, identification, quatitation, hydrogen, deuterium, exchange, oxidative, footprint, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_570 | SCR_017818 | KUMC Mass Spectrometry/Proteomics Core Laboratory | 2026-02-15 09:21:27 | 0 | |||||||
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Iowa State University Office of Biotechnology Protein Core Facility Resource Report Resource Website 1+ mentions |
Iowa State University Office of Biotechnology Protein Core Facility (RRID:SCR_017780) | access service resource, core facility, service resource | Core offers protein/peptide sequencing, large and small scale peptide synthesis (Fmoc), matrix assisted laser desorption/ionization (MALDI) mass spectrometry, SDS-PAGE/electroblotting, 2-D gel electrophoresis, isoelectric focusing (IEF), in-gel and solution digestion, tandem mass spectrometry (LC-MS/MS), ion mobility mass spectrometry (IM-MS), digital image acquisition and analysis using Typhoon imaging system and 2D gel documentation/analysis system, and semi-preparative, analytical and micro-analytical high performance liquid chromatography (HPLC). MALDI, HPLC, SDS-PAGE/blotting, IEF, 2D gel electrophoresis, 2D gel documentation/analysis and Typhoon imaging system are all available for user operation after appropriate training. | Protein, peptide, sequencing, synthesis, laser, desorption, ionization, mass, spectrometry, SDS-PAGE, gel, electrophoresis, liquid, chromatography, imaging, system, training, service, core | Open | ABRF_359 | SCR_017780 | Protein Facility of the Iowa State University Office of Biotechnology | 2026-02-15 09:22:07 | 2 | |||||||||
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The Rockefeller University Proteomics Resource Center Core Facility Resource Report Resource Website 10+ mentions |
The Rockefeller University Proteomics Resource Center Core Facility (RRID:SCR_017797) | access service resource, core facility, service resource | Core provides analysis of proteins, peptides, lipids, polar metabolites and small molecules by high resolution/high mass spectrometry. Targeted and hypothesis free analysis are offered combined with relative quantitation based on either label free, tandem mass tags or metabolic labelling. Acquisition tools include Data Dependent (DDA) and Data Independent (DIA). | Analysis, biomolecule, protein, peptide, mass, spectrometry, proteomics, parallel, reaction, monitoring, selected, ion, stable, isotope, labeled, service, core, PRM, SIM, Metabolomics, Lipidomics |
is listed by: ABRF CoreMarketplace has parent organization: Rockefeller University; New York; USA |
Open | ABRF_443 | https://coremarketplace.org/?FacilityID=443&citation=1 | SCR_017797 | , Rockefeller University Proteomics Resource Center, Rockefeller University Proteomics Resource Center Core Facility, Proteomics Resource Center | 2026-02-15 09:22:06 | 19 | |||||||
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Florida State University X-Ray Crystallography Core Facility Resource Report Resource Website 1+ mentions |
Florida State University X-Ray Crystallography Core Facility (RRID:SCR_017922) | XRF | access service resource, core facility, service resource | Shared macromolecular x-ray crystallography facility provides instruments and expertise for screening, optimizing, imaging, growing, and storing crystals of biological macromolecules. The X-Ray Facility coordinates single crystal x-ray diffraction data collection at third generation synchrotron x-ray source using FSU's membership at the National Synchrotron Light Source II at Brookhaven National Lab, Upton, NY. XRF also offers custom buffer preparation, optimization, and crystal set-up using multi-well format crystallization blocks and plates.XRF has ARI Crystal Gryphon robot, Formulatrix Rock Imager, Formulator 16, Rock Maker software, RUMED incubator, Cryo storage and shipping dewars, Leica S8 AP0 Zoom microscope and other amenities. | Macromolecular, X-ray, crystallography, instrument, expertise, collecting, processing, diffraction, data, single, crystal, protein, screeing, service, core |
is listed by: ABRF CoreMarketplace has parent organization: Florida State University; Florida; USA |
Restricted | ABRF_815 | https://coremarketplace.org/?FacilityID=815 | http://biophysics.fsu.edu/facilities/x-ray-facility/ | SCR_017922 | X-Ray Crystallography Facility | 2026-02-15 09:22:09 | 1 | |||||
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Nevada University Genomics Core Facility Resource Report Resource Website |
Nevada University Genomics Core Facility (RRID:SCR_018272) | access service resource, core facility, service resource | Provides development and support of genomics-based research, serving investigators in Nevada and beyond. Staff can be contracted for select services including ABI 3130 DNA sequencing, BD FACSCalibur flow cytometry, Affymetrix microarray processing, Agilent 2100 Bioanalyzer analysis and Qubit analysis. Facility also provides equipment and training for real-time PCR, Western blot/gel/microarray scanning, and analysis of DNA, RNA and protein samples. | Genomics, Nevada University, DNA sequencing, flow cytometry, microarray, analysis, RT PCR, Western Blotting, RNA, protein, core facility, USEDit, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit |
Open | ABRF_351 | https://coremarketplace.org/?FacilityID=351 | SCR_018272 | University of Nevada, Las Vegas - Genomics Core Facility, UNLV Genomics Core Facility | 2026-02-15 09:22:12 | 0 | |||||||
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Northwestern University Proteomics Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University Proteomics Core Facility (RRID:SCR_017945) | access service resource, core facility, service resource | Core offers multiple types of experiments from simple protein identification to protein quantitation. Performs traditional bottom-up proteomics, where proteins are digested with enzyme prior to analysis and intact, top-down proteomics analyses. Services include proteins identification after in-gel or in-solution digestion, top-down mass spectrometry to preserve post-translationally modified forms of proteins present in vivo by measuring them intact, IP-MS Pulldown,BioID service to identify target of biotin ligase that has been tagged onto their protein via traditional cloning methods,Untargeted Quantitative Peptide Proteomics,Targeted Quantitative Peptide Proteomics,Epiproteomic Histone Modification Panel A,Epiproteomic Histone Modification Panel B,Untargeted Metabolomics,Phosphoproteomics,PTM Scan,ChIP-MS. | Protein, indentification, quantitation, proteomics, analysis, enzyme, digestion, mass, spectrometry, peptide, targeted, epiproteomic, histone, modification, untargeted, phosphoproteomics, PTM Scan, ChIP-MS, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Northwestern University; Illinois; USA |
NCI P30 CA060553; NIH Office of the Director S10 OD025194; NIGMS P41 GM108569 |
Open | SCR_017880, ABRF_944 | https://coremarketplace.org/?FacilityID=944 | https://coremarketplace.org/?FacilityID=738 | SCR_017945 | Northwestern Proteomics, Northwestern University Proteomics Center of Excellence Core Facility | 2026-02-15 09:21:30 | 5 | |||||
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Salk Institute Peptide Synthesis Core Facility Resource Report Resource Website |
Salk Institute Peptide Synthesis Core Facility (RRID:SCR_014848) | access service resource, core facility, service resource | Core facility that provides services such as peptide synthesis, incorporation of non-conventional and/or modified amino acids, HPCL characterization and purification, and Mass spec analysis. | core facility, la jolla, peptide synthesis, protein, amino acid, hpcl, mass spec | Salk Institute Peptide Synthesis Core Facility ; NCI CCSG P30 014195 |
Commercially available | SCR_014848 | 2026-02-15 09:21:11 | 0 | ||||||||||
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MCMBB Resource Report Resource Website 1+ mentions |
MCMBB (RRID:SCR_006198) | MCMBB | service resource, analysis service resource, data analysis service, production service resource | A web tool used in the discrimination of beta-barrel outer membrane proteins with a Markov chain model. MCMBB is a fast algorithm, which discriminates beta-barrel outer membrane proteins from globular proteins and from alpha-helical membrane proteins. The algorithm is based on a 1st order Markov Chain model, which captures the alternating pattern of hydrophilic-hydrophobic residues occurring in the membrane-spanning beta-strands of beta-barrel outer membrane proteins. The model achieves high accuracy in discriminating outer membrane proteins, since it can discriminate beta-barrel outer membrane with a correct classification rate of 90.08% and the globular proteins with a correct classification rate of 92.67%. When submitting alpha-helical membrane proteins, the method shows an accuracy of 100%. A score greater than zero, indicates that the protein is more likely to be a beta-barrel outer membrane protein, whereas a result lower than zero, indicates that the protein is probable not a beta-barrel. You may enter up to 1000 sequences in Fasta format. | algorithm, beta-barrel outer membrane protein, globular protein, alpha-helical membrane protein, markov chain model, beta-barrel, protein, outer membrane protein, classification, fasta, model |
is listed by: 3DVC has parent organization: University of Athens Biophysics and Bioinformatics Laboratory |
Acknowledgement requested | nlx_151742 | SCR_006198 | MCMBB: Markov Chain Model for Beta Barrels | 2026-02-15 09:19:11 | 1 | |||||||
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waveTM Resource Report Resource Website 1+ mentions |
waveTM (RRID:SCR_006199) | waveTM | service resource, analysis service resource, data analysis service, production service resource | A web tool for the prediction of transmembrane segments in alpha-helical membrane proteins. A sliding window of 20 residues is used in order to calculate an average residue hydrophobicity profile, using a hydrophobicity scale. Discrete Wavelet Transform is applied on the average residue hydrophobicity signal and the different frequency coefficients produced are adaptively thresholded so that a denoised signal is reconstructed. A dynamic programming algorithm processes the denoised signal to provide the optimal model for the number, the length and the location of membrane-spanning segments. The end points of the predicted segments are extended to include flanking hydrophobic residues. Topology prediction can also be obtained in conjunction with OrienTM (Liakopoulos et al, 2001). Analysis of a non-redundant test set, provides a ~95% per segment accuracy and ~90% per residue accuracy. Now, you can: * Run waveTM on a sequence * Browse the results obtained with the algorithm * View additional material concerning the hydrophobicity scale | wavelet, predict, transmembrane segment, alpha-helical membrane protein, protein, protein sequence, discrete wavelet transform, sequence, hydrophobicity scale, hydrophobicity, transmembrane protein, topology, transmembrane |
is related to: orienTM is related to: PRED-TMR has parent organization: University of Athens Biophysics and Bioinformatics Laboratory |
University of Athens; Athens; Greece | PMID:15107018 | Freely available | nlx_151743 | SCR_006199 | waveTM: Wavelet-based transmembrane segment prediction | 2026-02-15 09:19:10 | 3 | |||||
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PRED-TMBB Resource Report Resource Website 50+ mentions |
PRED-TMBB (RRID:SCR_006190) | PRED-TMBB | service resource, analysis service resource, data analysis service, production service resource | A web tool, based on a Hidden Markov Model, capable of predicting the transmembrane beta-strands of the gram-negative bacteria outer membrane proteins, and of discriminating such proteins from water-soluble ones when screening large datasets. The model is trained in a discriminative manner, aiming at maximizing the probability of the correct prediction rather than the likelihood of the sequences. The training is performed on a non-redundant database consisting of 16 outer membrane proteins (OMP''s) with their structures known at atomic resolution. We show that we can achieve predictions at least as good comparing with other existing methods, using as input only the amino-acid sequence, without the need of evolutionary information included in multiple alignments. The method is also powerful when used for discrimination purposes, as it can discriminate with a high accuracy the outer membrane proteins from water soluble in large datasets, making it a quite reliable solution for screening entire genomes. This web-server can help you run a discriminating process on any amino-acid sequence and thereafter localize the transmembrane strands and find the topology of the loops. | protein, hidden markov model, prediction, membrane protein, beta-barrel outer membrane protein, gram-negative bacteria, topology, outer membrane protein, beta-barrel protein, probability, transmembrane strand, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: University of Athens Biophysics and Bioinformatics Laboratory |
Greek Ministry of National Education and Religious Affairs | PMID:15215419 PMID:15070403 |
Acknowledgement requested | biotools:pred-tmbb, nlx_151734 | https://bio.tools/pred-tmbb | SCR_006190 | PRED-TMBB: A Hidden Markov Model method capable of predicting and discriminating beta-barrel outer membrane proteins | 2026-02-15 09:19:11 | 54 |
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