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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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PGN Resource Report Resource Website |
PGN (RRID:SCR_004559) | PGN | data repository, storage service resource, data analysis service, analysis service resource, data set, data or information resource, production service resource, service resource, database | Resource for the storage, retrieval and annotation of plant ESTs, with a focus on comparative genomics. PGN comprises an analysis pipeline and a website, and presently contains mainly data from the Floral Genome Project. However, it accepts submission from other sources. All data in PGN is directly derived from chromatograms and all original and intermediate data are stored in the database. The current datasets on PGN come from the floral genome project and includes the following species: Acorus americanus, Amborella trichopoda, Asparagus officinalis, Cucumis sativus, Eschscholzia californica, Eschscholzia californica, Illicium parviflorum, Ipomopsis aggregata, Liriodendron tulipifera, Mesembryanthemum crystallinum, Mimulus guttatus, Nuphar advena, Papaver somniferum, Persea americana, Prymnesium parvum, Ribes americanum, Saruma henryi, Stenogyne rugosa, Vaccinium corymbosa, Welwitschia mirabilis, Yucca filamentosa, Zamia fischeri. For functional annotation, blast is used to compare find the best match of each unigene sequence to in the Genbank NR database, and the in complete coding sequences from Arabidopsis. These annotations are stored in the database and serve as the primary source of annotation. The annotation framework will be extended to Gene Ontology annotations in the future. | expressed sequence tag, genomics, functional annotation, blast, sequencing, chromatogram | has parent organization: Cornell University; New York; USA | NSF DBI-9872617; NSF DBI-0115684 |
nlx_55223 | SCR_004559 | PGN - Plant Genome Network, Plant Genome Network | 2026-02-14 02:00:58 | 0 | |||||||
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Orthopaedic Surgery Resource Report Resource Website 1+ mentions |
Orthopaedic Surgery (RRID:SCR_004715) | narrative resource, data or information resource, wiki, book | Orthopaedic Surgery is a collaborative wikibook of orthopedic surgery. *Preface *Chapter 1: Basic Sciences *Chapter 2: Upper Limb *Chapter 3: Foot and Ankle *Chapter 4: Spine *Chapter 5: Hand and Microsurgery *Chapter 6: Pediatric Orthopedics *Chapter 7: Adult Reconstruction *Chapter 8: Sports Medicine *Chapter 9: Musculoskeletal Tumors *Chapter 10: Injury *Chapter 11: Surgical Procedures *Chapter 12: Rehabilitation *Chapter 13: Practice | has parent organization: Wikibooks | nlx_71236 | SCR_004715 | Orthopaedic Surgery (wikibook), Orthopedic Surgery | 2026-02-14 02:00:59 | 1 | ||||||||||
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National University of Ireland; Galway; Ireland Resource Report Resource Website 1+ mentions |
National University of Ireland; Galway; Ireland (RRID:SCR_004677) | NUI Galway | university | Located in the city of Galway in Ireland. |
is affiliated with: Big Data Public Private Forum is related to: Pharma-Planta Consortium is related to: Biomedical Diagnostics Institute is parent organization of: Digital Enterprise Research Institute |
grid.6142.1, Wikidata:Q644478, Crossref funder ID:501100001634, ISNI:0000 0004 0488 0789, nlx_149500 | https://ror.org/03bea9k73 | SCR_004677 | National University of Ireland, National University of Ireland Galway | 2026-02-14 02:00:43 | 1 | ||||||||
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UnifiedGenotyper Resource Report Resource Website 500+ mentions |
UnifiedGenotyper (RRID:SCR_004710) | UnifiedGenotyper | software resource | A multiple-sample, technology-aware SNP and indel caller. |
is listed by: OMICtools has parent organization: Broad Institute |
OMICS_00080 | SCR_004710 | 2026-02-14 02:00:59 | 561 | ||||||||||
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CBLAST Resource Report Resource Website 1+ mentions |
CBLAST (RRID:SCR_004711) | production service resource, service resource, analysis service resource, d spatial image | The NCBI Related Structures tool allows you to find 3D structures from the Molecular Modeling Database (MMDB) that are similar in sequence to a query protein. Although the query protein may not yet have a resolved structure, the 3D shape of a similar protein sequence can shed light on the putative shape and biological function of the query protein. CBLAST is a tool that compares a query protein sequence against all protein sequences from resolved 3D structures by using protein BLAST against the PDB data set. The purpose is to find representative 3D structures for the query and/or its homologs, as available. Each record in the Entrez Protein database has been CBLAST''ed and the search results are available as Related Structures in the Links menu of Entrez Protein records. You can also enter a protein query sequence directly into the CBLAST search page in order to find its sequence-similar 3D structure records. The search results can be viewed in Cn3D (hence the name CBLAST), which displays an alignment of the query protein to the related structure''s sequence and allows you to interactively examine the sequence-structure relationship. | gold standard |
is related to: NCBI Structure has parent organization: NCBI |
PMID:17135201 | nlx_70506 | SCR_004711 | NCBI Related Structures, NCBI Related Structure Search | 2026-02-14 02:00:46 | 2 | ||||||||
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Open Medicine Live Wiki Resource Report Resource Website |
Open Medicine Live Wiki (RRID:SCR_004550) | Open Medicine Live | narrative resource, data or information resource, wiki | This project explores the use of a wiki as an online collaborative tool for improving and updating peer-reviewed systematic reviews. Posted on this wiki is a copy of the article: Second-line therapy in patients with type 2 diabetes inadequately controlled with metformin monotherapy: A systematic review and mixed treatment comparisons meta-analysis. Readers are invited to edit the article by adding to, deleting or modifying its contents. | metformin, treatment | Type 2 diabetes mellitus | Content:, Creative Commons Attribution-ShareAlike License, v3 Unported | nlx_54196 | SCR_004550 | Open Medicine: where articles Live | 2026-02-14 02:00:45 | 0 | |||||||
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Systems Biology Graphical Notation Resource Report Resource Website 1+ mentions |
Systems Biology Graphical Notation (RRID:SCR_004671) | SBGN | international standard specification, training resource, portal, data or information resource, software resource, narrative resource, meeting resource, topical portal, standard specification | The Systems Biology Graphical Notation (SBGN) project aims to develop high quality, standard graphical languages for representing biological processes and interactions. Each SBGN language is based on the consensus of the broad international SBGN community of biologists, curators and software developers. Over the course of its development many individuals, organizations and companies made invaluable contributions to the SBGN through participating in discussions and meetings, providing feedback on the documentation and worked examples, adopting the standard and spreading the word. Circuit diagrams and Unified Modeling Language diagrams are just two examples of standard visual languages that help accelerate work by promoting regularity, removing ambiguity and enabling software tool support for communication of complex information. Ironically, despite having one of the highest ratios of graphical to textual information, biology still lacks standard graphical notations. The recent deluge of biological knowledge makes addressing this deficit a pressing concern. Toward this goal, we present the Systems Biology Graphical Notation (SBGN), a visual language developed by a community of biochemists, modelers and computer scientists. SBGN consists of three complementary languages: process diagram, entity relationship diagram and activity flow diagram. Together they enable scientists to represent networks of biochemical interactions in a standard, unambiguous way. We believe that SBGN will foster efficient and accurate representation, visualization, storage, exchange and reuse of information on all kinds of biological knowledge, from gene regulation, to metabolism, to cellular signaling. A list of software packages known to provide (or have started to develop) support for SBGN notations is available. | New Energy and Industrial Technology Development Organization ; Okinawa Institute of Science and Technology ; BBSRC ; National Institute of Advanced Industrial Science and Technology of Japan ; European Media Laboratory EML Research GmbH ; California Institute of Technology; California; USA ; NIGMS 1R01GM081070-01 |
PMID:19668183 | nlx_66628 | SCR_004671 | 2026-02-14 02:00:43 | 1 | |||||||||
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Capralogics Resource Report Resource Website 1+ mentions |
Capralogics (RRID:SCR_004673) | commercial organization | An Antibody supplier | nlx_152324 | SCR_004673 | Capralogics Inc. | 2026-02-14 02:00:46 | 1 | |||||||||||
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National Temporal Bone Pathology Resource Registry Resource Report Resource Website |
National Temporal Bone Pathology Resource Registry (RRID:SCR_004705) | data or information resource, portal, database, topical portal | A non-profit organization that promotes research on hearing and balance disorders. The Registry database allows researchers to perform simple searches to locate specimens of interest. The results show the laboratories where specimens that match the query are located. Investigators should contact the individual laboratories for studying the specimens or for access to the sections. The Registry also serves the public and the scientific community through the dissemination of public information on temporal bone donation and research, enrollment of temporal bone donors, publication of The Registry, a newsletter for researchers, conservation of existing human temporal bone collections, and professional educational activities for physicians and scientists. | database, specimen, temporal bone, ear, brain, tissue, auditory system, vestibular system, hearing disorder, balance disorder, otologic disorder, genetic deafness, bells palsy, sudden idiopathic deafness, hearing impairment |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Harvard Medical School; Massachusetts; USA |
Genetic deafness, Bells palsy, Sudden idiopathic deafness, Vestibular neuritis, Perilymphatic leak | National Institute on Deafness and Other Communication Disorders contract HHSN263200900019C | PMID:8343246 | Public, Available to the research community | nlx_69775 | SCR_004705 | National Institute on Deafness and Other Communication Disorders National Temporal Bone Hearing Balance Pathology Resource Registry, National Temporal Bone Registry, NIDCD National Temporal Bone Hearing and Balance Pathology Resource Registry, NIDCD National Temporal Bone Hearing & Balance Pathology Resource Registry | 2026-02-14 02:00:46 | 0 | |||||
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OpenAnesthesia.org Resource Report Resource Website 1+ mentions |
OpenAnesthesia.org (RRID:SCR_004547) | podcast, audio track, training resource, radio, data or information resource, wiki, continuing medical education, narrative resource | OpenAnesthesia.org is a wiki promoting evidence-based medicine in anesthesiology, critical care and pain management. It is divided into several, major Units (Anesthesia Text, Critical Care Manual, Practice-Changing Articles, Controversies in Anesthesia, ABA keywords, Audio/Video Archives, CME, GME, Pharmacology...), each of which is subdivided into Chapters (or in some cases, even smaller subdivisions, such as sections, individual key words, topics, points of interest, or bibliographic references). The goal of Anasthesia Text is to collect and distribute evidence-based information regarding all aspects of anesthesia. This section is similar to a traditional textbook in the broad range of topics covered, but different in that it will provide this information in the form of a wiki (i.e. anyone can edit, add, or subtract to it). OpenAneshesia.org provides anesthesia residents with GME credit and Program Directors with a tool to document core competency activities for Accreditation Council for Graduate Medical Education (ACGME)-mandated learning portfolios. Residents are invited invited to read the Anesthesia & Analgesia article of the month and listen to an interview with one of the article''s authors. During the interview, the author will discuss the specifics of the article as well as general topics geared towards improving each resident''s appreciation of basic or clinical research. After listening to the podcast and reading the article, residents can answer 5 questions in order to demonstrate their mastery of the topics discussed (similar to the Anesthesia & Analgesia Continuing Medical Education (CME) section). Like the CME section, after demonstrating proficiency, a resident will receive a printable certificate that will specify which ACGME core competencies were addressed in the article and interview. The certificates can be put in each resident''s ACGME-required learning portfolio. | graduate medical education | International Anesthesia Research Society | nlx_54007 | SCR_004547 | OpenAnesthesia Wiki, OA.org, OpenAnesthesia | 2026-02-14 02:00:42 | 5 | |||||||||
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MIGHEALTHNET (Migrant Health) Resource Report Resource Website |
MIGHEALTHNET (Migrant Health) (RRID:SCR_004701) | narrative resource, data or information resource, wiki | The MIGHEALTHNET wiki has been set up to gather information about the health of migrants and ethnic minorities in the United Kingdom. It forms part of the project MIGHEALTHNET, currently being carried out in 16 countries and co-funded by DG SANCO, the Health and Consumer Protection Directorate-General of the European Commission. We invite you to add your contributions to it and to pass on the address of this site to others who may be interested. This website is part of an EU Project that aims to give professionals, policy makers including health authorities, researchers, educators and representatives of migrant and minority groups easy access to a dynamically evolving body of knowledge and a virtual network of expertise. It will stimulate the formation of networks of individuals and organizations concerned with migrant and minority health. | has parent organization: Queen Mary University of London; London; United Kingdom | European Union | nlx_69465 | SCR_004701 | Mighealthnet | 2026-02-14 02:01:00 | 0 | |||||||||
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NuChart Resource Report Resource Website 1+ mentions |
NuChart (RRID:SCR_004703) | NuChart | software resource | An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations. | is listed by: OMICtools | OMICS_00525 | SCR_004703 | 2026-02-14 02:00:43 | 2 | ||||||||||
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CHDI Foundation Resource Report Resource Website 10+ mentions |
CHDI Foundation (RRID:SCR_004622) | CHDI | portal, data or information resource, funding resource, disease-related portal, topical portal | A private, not-for-profit research organization that serves as an international collaborative enabler in order to discover drugs that slow the progression of Huntington's disease (HD). The activities of CHDI extend from exploratory biology to the identification and validation of therapeutic targets, and from drug discovery and development to clinical studies and trials. CHDI works with biotech and pharmaceutical companies and funds and works with academic HD researchers at universities. | huntington's disease, antibody, collaborative enabler, international network, funding resource | is parent organization of: HD Community BioRepository | Available to academic huntington's disease researchers | nlx_143844 | SCR_004622 | CHDI Foundation Inc | 2026-02-14 02:00:58 | 26 | |||||||
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Alabama Head Injury Foundation Resource Report Resource Website |
Alabama Head Injury Foundation (RRID:SCR_004580) | AHIF | patient-support portal, portal, data or information resource, disease-related portal, topical portal | The Alabama Head Injury Foundation (AHIF) was founded in 1983 to increase public awareness of Traumatic Brain Injury (TBI) and to stimulate the development of supportive services. Today, AHIF is among the largest state brain injury associations in the nation with model programs and statewide services. Its mission is to improve the quality of life for people who have survived traumatic brain injuries and for their families. Whether the injury is mild or severe the life of the injured person and their family is changed forever. The impact can be both emotionally and financially devastating. AHIF provides the information to help clients and families understand the results of injury. AHIF helps access available resources and provides services and programs which meet the unique needs of individuals with traumatic brain injury (TBI) as well as spinal cord injury (SCI) in certain programs. | traumatic brain injury, brain, brain injury, human, clinical trial, one mind tbi | nlx_143826 | SCR_004580 | Alabama Head Injury Foundation: Improving Life After Traumatic Brain Injury | 2026-02-14 02:00:59 | 0 | |||||||||
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Brain Tumor Foundation For Children Resource Report Resource Website |
Brain Tumor Foundation For Children (RRID:SCR_004735) | BTFC | portal, data or information resource, funding resource, disease-related portal, topical portal | Established in 1983 in Atlanta, GA, the Brain Tumor Foundation for Children (BTFC) was the first nonprofit organization in the United States to focus on pediatric brain tumor disease. The mission of the Brain Tumor Foundation for Children is to provide financial assistance, social support, and information for families of children with brain and spinal cord tumors; fund research projects that improve treatment options and search for a cure; and raise public awareness of the disease and advocate on behalf of children who are affected. | human, child, brain, tumor, cancer, pediatric, spinal cord, brain cancer | nlx_143888 | SCR_004735 | Brain Tumor Foundation For Children Inc. | 2026-02-14 02:00:46 | 0 | |||||||||
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BAMS Neuroanatomical Ontology Resource Report Resource Website 1+ mentions |
BAMS Neuroanatomical Ontology (RRID:SCR_004616) | data or information resource, ontology, controlled vocabulary | Ontology designed for neuroscience. Includes complete set of concepts that describe parts of rat nervous system, growing set of concepts that describe neuron populations identified in different brain regions, and relationships between concepts. | has parent organization: Brain Architecture Management System | NIMH MH61223; NINDS NS16668; NINDS NS050792 |
PMID:18974794 | Restricted | nlx_61376 | http://brancusi.usc.edu/bkms/bams-ontology.html | SCR_004616 | BAMS Ontology | 2026-02-14 02:00:45 | 2 | ||||||
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Pplacer Resource Report Resource Website 10+ mentions |
Pplacer (RRID:SCR_004737) | Pplacer | software resource | Software that places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis. | classification, phylogenetic classification |
is listed by: OMICtools has parent organization: Fred Hutchinson Cancer Center |
PMID:21034504 | OMICS_01462 | SCR_004737 | pplacer: phylogenetic placement and downstream analysis | 2026-02-14 02:00:44 | 30 | |||||||
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VA Polytrauma / TBI System of Care Resource Report Resource Website |
VA Polytrauma / TBI System of Care (RRID:SCR_004697) | PSC | data or information resource, portal, topical portal | A network of specialized rehabilitation programs serving Veterans and Service Members with both combat and civilian related Traumatic Brain Injury (TBI) and polytrauma. Services available include: interdisciplinary evaluation and treatment, development of a comprehensive plan of care, case management, patient and family education and training, psychosocial support, and application of advanced rehabilitation treatments and prosthetic technologies. | traumatic brain injury, recovery, rehabilitation, symptom, screening, brain, one mind tbi resource | has parent organization: U.S. Department of Veterans Affairs | Traumatic Brain Injury, Polytrauma | nlx_143875 | SCR_004697 | Polytrauma System of Care, Polytrauma / TBI System of Care, VA Polytrauma System of Care | 2026-02-14 02:00:59 | 0 | |||||||
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Psychology Wiki: Neuroinformatics Resource Report Resource Website |
Psychology Wiki: Neuroinformatics (RRID:SCR_004579) | narrative resource, data or information resource, wiki | Psychology wiki is an up-to-date, authoritative statement of knowledge, theory, and practice in the whole field of psychology reflecting generally accepted academic standards. A topic covered in this wiki portal includes Neuroinformatics. The Neuroinformatics wiki page currently offers the following categories: overview, history, collaboration with other disciplines, research programs and groups, technologies and developments, references, external links, research centers, and more. Neuroinformatics is a research field that encompasses the development of neuroscience data, knowledge and application of computational models and analytical tools for the integration and analysis of experimental data and for improving existing theories about nervous system and brain. Neuroinformatics provides tools, databases, models, networks technologies and models for the clinical and research purposes in the neuroscience community and other fields. | computational neuroscience | nlx_57306 | SCR_004579 | Psychology Wiki - Neuroinformatics | 2026-02-14 02:00:45 | 0 | ||||||||||
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Brain Tumor Action Network Resource Report Resource Website |
Brain Tumor Action Network (RRID:SCR_004733) | BTAN | portal, data or information resource, funding resource, disease-related portal, topical portal | The Brain Tumor Action Network is a not-for-profit 501(c)(3) organization established to bring awareness to the general public about brain tumors and to educate and empower brain tumor survivors, their families and friends. We foster grassroots advocacy on federal and state legislative issues affecting brain tumor survivors, their families and friends by providing information on brain tumor-related public issues and effective advocacy. BTAN has the following goals: * To encourage those living with brain tumors, their families and friends to become advocates for brain tumor awareness. * To foster grassroots advocacy on federal and state legislative issues affecting brain tumor survivors, their families and friends by providing information (and training) on brain tumor related public issues and effective advocacy. * To work independently and in collaboration with other brain tumor related organizations on behalf of the brain tumor community family. * To increase brain tumor awareness nationally through the Hidden Under Our Hats, National Brain Tumor Awareness Project in Washington, DC and at various treatment centers, conferences and fund raisers. * To raise funds to support specific research projects. * To create a PILOT respite care program for brain tumor survivors and their families at Moffitt Cancer Center & Research Institute (Tampa, FL). The respite care fund would assist brain tumor patients and their family members with additional care and support from home health care workers. | human, brain, tumor, cancer | nlx_143887 | SCR_004733 | 2026-02-14 02:00:44 | 0 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
