Tools   Select Another Resource Report Type

http://purl.bioontology.org/ontology/IMGT-ONTOLOGY

Ontology for immunogenetics and immunoinformatics. Provides semantic specification of terms to be used in immunogenetics and immunoinformatics and manages related knowledge, thus allowing standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. Manages the knowledge through diverse facets relying on seven axioms, IDENTIFICATION, CLASSIFICATION, DESCRIPTION, NUMEROTATION, LOCALIZATION, ORIENTATION and OBTENTION. These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized. The axioms constitute the Formal IMGT-ONTOLOGY, also designated as IMGT-Kaleidoscope. As the same axioms can be used to generate concepts for multi-scale level approaches, the Formal IMGT-ONTOLOGY represents a paradigm for system biology ontologies, which need to identify, to classify, to describe, to number, to localize and to orientate objects, processes and relations at the molecule, cell, tissue, organ, organism or population levels. IMGT, the international ImMunoGeneTics information system, has been built on IMGT-ONTOLOGY. The version 1.0.2 of IMGT-ONTOLOGY includes the concepts of IDENTIFICATION and the concepts of CLASSIFICATION.

Proper citation: IMGT-ONTOLOGY (RRID:SCR_010342) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IDQA

Ontology for Image and Data Quality Assessment for scientific data management.

Proper citation: Image and Data Quality Assessment Ontology (RRID:SCR_010343) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SYMP

Ontology designed around the guiding concept of a symptom being: A perceived change in function, sensation or appearance reported by a patient indicative of a disease. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it''s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom

Proper citation: Symptom Ontology (RRID:SCR_010388) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/STATO

A general-purpose STATistics Ontology to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.

Proper citation: STATistics Ontology (RRID:SCR_010421) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SYN

Controlled vocabulary used for various entity properties in the Synapse platform.

Proper citation: Sage Bionetworks Synapse Ontology (RRID:SCR_010422) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SEP

A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.

Proper citation: Sample Processing and Separation Techniques Ontology (RRID:SCR_010423) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OBCS

A biomedical ontology in the domain of biological and clinical statistics that is primarily targeted for statistical representation in the fields in biological, biomedical, and clinical domains. It uses the Basic Formal Ontology (BFO) as the upper level ontology. OBCS imports all biostatistics related terms in the Ontology for Biomedical Investigations (OBI) including all logical axioms.

Proper citation: Ontology of Biological and Clinical Statistics (RRID:SCR_010391) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OCRE

Ontology to support systematic description of, and interoperable queries on, human studies and study elements.

Proper citation: Ontology of Clinical Research (RRID:SCR_010392) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TAXRANK

A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms.

Proper citation: Taxonomic Rank Vocabulary (RRID:SCR_010430) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OGR

Ontology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS.

Proper citation: Ontology of Geographical Region (RRID:SCR_010398) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TRAK

Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice.

Proper citation: Taxonomy for Rehabilitation of Knee Conditions (RRID:SCR_010431) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-OTHER-FACTORS

Ontology of the value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM).

Proper citation: Traditional Medicine Other Factors Value Set (RRID:SCR_010437) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TRON

Ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult.

Proper citation: Tribolium Ontology (RRID:SCR_010440) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PAE

THIS RESOURCES IS NO LONGER IN SERVICE, documented on April 23, 2014. REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/

Proper citation: Plant Anatomy (RRID:SCR_010408) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NPO

An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.

Proper citation: NanoParticle Ontology (RRID:SCR_010369) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NCIT

A vocabulary for clinical care, translational and basic research, and public information and administrative activities.

Proper citation: National Cancer Institute Thesaurus (RRID:SCR_010370) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NATPRO

An ontology for describing biological activities of natural products.

Proper citation: Natural Products Ontology (RRID:SCR_010373) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RADLEX

A controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see : http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf Converted to use OWL format submissions

Proper citation: Radiology Lexicon (RRID:SCR_010418) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RH-MESH

Ontology of a modified version of Medical Subjects Headings Thesaurus 2014, that is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations). Concepts in the MeSH concept tree are merged with MeSH term ids. Note that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology. For example, in MeSH there is a single term with the label Heart. The internal code (unique identifier) for this term is A07.541. In this ontology there are two entirely different terms, both of which have the label Heart. The codes for these terms are A07.541 and D006321.

Proper citation: Robert Hoehndorf Version of MeSH (RRID:SCR_010419) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PMA

Ontology of a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports.

Proper citation: Portfolio Management Application (RRID:SCR_010411) Copy   

•   Source: SciCrunch Registry