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http://cogpo.org

Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response.

Proper citation: Cognitive Paradigm Ontology (RRID:SCR_002235) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NIC

Ontology of nursing interventions classification.

Proper citation: Nursing Interventions Classification (RRID:SCR_000911) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICPC2P

Ontology of the international classification of primary care -2 PLUS

Proper citation: International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SBOL

Ontology to represent standardized graphical notation for synthetic biology.

Proper citation: Synthetic Biology Open Language Visual Ontology (RRID:SCR_001261) Copy   

•   Source: SciCrunch Registry

http://environmentontology.org/

Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material.

Proper citation: EnvO (RRID:SCR_000182) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CTONT

Ontology of clinical trial terminology.

Proper citation: Epoch Clinical Trial Ontology (RRID:SCR_000366) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VSAO

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system.

Proper citation: Vertebrate Skeletal Anatomy Ontology (RRID:SCR_000313) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RNPRIO

Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries

Proper citation: Research Network and Patient Registry Inventory Ontology (RRID:SCR_000308) Copy   

•   Source: SciCrunch Registry

https://github.com/information-artifact-ontology/IAO

An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies.

Proper citation: Information Artifact Ontology (RRID:SCR_000477) Copy   

•   Source: SciCrunch Registry

http://aclame.ulb.ac.be/Classification/mego.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Gene Ontology dedicated to the functions of mobile genetic elements. The terms defined are used to annotate phage and plasmid protein families in ACLAME. Note: The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up.

Proper citation: MeGO (RRID:SCR_000110) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SPO

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available.

Proper citation: Skin Physiology Ontology (RRID:SCR_006253) Copy   

•   Source: SciCrunch Registry

http://cancer.gov/cancertopics/pdq/cancerdatabase

NCI''s comprehensive cancer database that contains summaries on a wide range of cancer topics; a registry of 8,000+ open and 19,000+ closed cancer clinical trials from around the world; a directory of professionals who provide genetics services; the NCI Dictionary of Cancer Terms, with definitions for 6,800+ cancer and medical terms; and the NCI Drug Dictionary, which has information on 2,300+ agents used in the treatment of cancer or cancer-related conditions. The PDQ cancer information summaries are peer reviewed and updated monthly by six editorial boards comprised of specialists in adult treatment, pediatric treatment, supportive care, screening and prevention, genetics, and complementary and alternative medicine. The Boards review current literature from more than 70 biomedical journals, evaluate its relevance, and synthesize it into clear summaries. Many of the summaries are also available in Spanish.

Proper citation: Physician Data Query (RRID:SCR_006833) Copy   

•   Source: SciCrunch Registry

https://obofoundry.org/ontology/cl.html

Ontology designed as a structured controlled vocabulary for cell types. It was constructed for use by the model organism and other bioinformatics databases. It includes cell types from prokaryotes, mammals, and fungi. The ontology is available in the formats adopted by the Open Biological Ontologies umbrella and is designed to be used in the context of model organism genome and other biological databases.

Proper citation: Cell Type Ontology (RRID:SCR_004251) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/suicideo

Ontology of suicidology.

Proper citation: suicideonto (RRID:SCR_010452) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EHDAA2

A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release.

Proper citation: Human Developmental Anatomy Ontology abstract version 2 (RRID:SCR_010337) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTODM-KDD

Ontology for representing data mining investigations. Its goal is to allow the representation of knowledge discovery processes and be general enough to represent the data mining investigations. The ontology is based on the CRISP-DM process methodology.

Proper citation: Ontology of Data Mining Investigations (RRID:SCR_010394) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-MER

Ontology of the meridian value set used in the International Classification of Traditional Medicine.

Proper citation: Traditional Medicine Meridian Value Sets (RRID:SCR_010436) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MCCL

A comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.

Proper citation: Cell Line Ontology by Mahadevan (RRID:SCR_010281) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NDFRT

Ontology of National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11

Proper citation: National Drug File - Reference Terminology (RRID:SCR_010372) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CSSO

An ontology for describing clinical signs and symptoms.

Proper citation: Clinical Signs and Symptoms Ontology (RRID:SCR_007226) Copy   

•   Source: SciCrunch Registry