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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ProteoWizard Resource Report Resource Website 1000+ mentions |
ProteoWizard (RRID:SCR_012056) | software resource | Software that enables rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard proteomics and LCMS dataset computations. | standalone software, c++ |
is listed by: OMICtools is related to: Skyline has parent organization: SourceForge |
PMID:23051804 | Apache License | OMICS_03354 | SCR_012056 | 2026-02-07 02:08:27 | 3028 | ||||||||
|
ADTEx Resource Report Resource Website 50+ mentions |
ADTEx (RRID:SCR_012059) | software resource | A software tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples. | standalone software, python, r |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23368785 | GNU General Public License | OMICS_03365 | SCR_012059 | 2026-02-07 02:08:27 | 84 | ||||||||
|
multiplierz Resource Report Resource Website 1+ mentions |
multiplierz (RRID:SCR_012058) | software resource | An open-source Python-based environment that provides a scriptable framework for efficient access to manufacturers'' proprietary data files via mzAPI. | python, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:19874609 | GNU Lesser General Public License | biotools:multiplierz, OMICS_03360 | https://bio.tools/multiplierz | SCR_012058 | 2026-02-07 02:08:29 | 7 | |||||||
|
TE-locate Resource Report Resource Website 1+ mentions |
TE-locate (RRID:SCR_012063) | software resource | A software tool to locate all copies of sequences in a reference sequence using read-pairs. | java, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:24832231 | OMICS_03507 | SCR_012063 | 2026-02-07 02:08:22 | 1 | |||||||||
|
Bpredictor Resource Report Resource Website |
Bpredictor (RRID:SCR_012065) | software resource | A software tool to predict the conformational epitopes from 3D structures. | standalone software |
is listed by: OMICtools has parent organization: Google Code |
PMID:21846404 | OMICS_04206 | SCR_012065 | 2026-02-07 02:08:22 | 0 | |||||||||
|
LAITOR Resource Report Resource Website 1+ mentions |
LAITOR (RRID:SCR_012101) | software resource | A text mining software developed to find co-occurrence of biological entities (gene/protein terms) together with biointeractions and concepts term from customized dictionaries. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:20122157 | GNU General Public License | OMICS_05240 | SCR_012101 | 2026-02-07 02:08:29 | 1 | ||||||||
|
MatNMR Resource Report Resource Website 10+ mentions |
MatNMR (RRID:SCR_012060) | software resource | A highly flexible software toolbox for processing 1D and 2D NMR and EPR spectra under MATLAB, creating high-quality 1D, 2D or 3D plots from the spectra and printing them in every type of format that is supported by MATLAB. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:17448713 | OMICS_03375 | SCR_012060 | 2026-02-07 02:08:22 | 16 | |||||||||
|
GPU-Meta-Storms Resource Report Resource Website 1+ mentions |
GPU-Meta-Storms (RRID:SCR_012029) | GPU-Meta-Storms | software resource | Optimized GPU-based software to efficiently measure the quantitative phylogenetic similarity among massive amount of microbial community samples. | c++, parallel computation 4, cuda, structure similarity, metagenomic, phylogenetic, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Chinese Academy of Sciences; Beijing; China |
PMID:24363375 | OMICS_02187, biotools:meta-storms | https://bio.tools/meta-storms | SCR_012029 | 2026-02-07 02:08:29 | 1 | |||||||
|
DIYABC Resource Report Resource Website 100+ mentions |
DIYABC (RRID:SCR_012031) | DIYABC | software resource | Software to make Approximate Bayesian Computation inferences about population history using Single Nucleotide Polymorphism, DNA sequence and microsatellite data. | population, single nucleotide polymorphism, dna sequence, microsatellite |
is listed by: OMICtools has parent organization: INRA - French National Institute for Agricultural Research; Paris; France |
PMID:24389659 | Free for academic use | OMICS_02197 | SCR_012031 | Do It Yourself ABC, DIYABC - Do it yourself ABC | 2026-02-07 02:08:26 | 255 | ||||||
|
FamAnn Resource Report Resource Website |
FamAnn (RRID:SCR_012032) | FamAnn | software resource | An automated variant annotation pipeline designed for facilitating target discovery for family-based sequencing studies. | is listed by: OMICtools | PMID:24395755 | GNU General Public License, v2 | OMICS_02204 | SCR_012032 | 2026-02-07 02:08:29 | 0 | ||||||||
|
University of Salamanca; Salamanca; Spain Resource Report Resource Website |
University of Salamanca; Salamanca; Spain (RRID:SCR_007833) | USAL | university | Spanish higher education institution, located in the city of Salamanca, west of Madrid, in the autonomous community of Castile and León. It was founded in 1134 and given the Royal charter of foundation by King Alfonso IX in 1218. |
is parent organization of: ProbeExplorer is parent organization of: Agile Protein Interactomes DataServer |
Wikidata:Q308963, grid.11762.33, nlx_149149, ISNI:0000 0001 2180 1817 | https://ror.org/02f40zc51 | SCR_007833 | Universidad de Salamanca, University of Salamanca | 2026-02-07 02:07:41 | 0 | ||||||||
|
INVERTER Resource Report Resource Website 1+ mentions |
INVERTER (RRID:SCR_007956) | INVERTER | software resource | Software for a de novo exact match tandem repeat finder which main advantage is without the need to specify either the pattern or a particular pattern size, integrated with a data visualization tool and has a built-in user-friendly Graphical User Interface. | is listed by: OMICtools | OMICS_00108 | SCR_007956 | 2026-02-07 02:07:23 | 3 | ||||||||||
|
BAMS Thesaurus Resource Report Resource Website |
BAMS Thesaurus (RRID:SCR_008003) | thesaurus | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19,2022. The BAMS Thesaurus is a part of the larger BAMS The Foundational Model of Connectivity (FMC). The principle of constructing the resource are: 1. Systematic attempts to produce internally consistent classifications and taxonomies require theoretical frameworks for deciding between alternatives. 2. Alternate classification and taxonomy schemes are always possible and must be accommodated. 3. The FMC is based on evidence, not authority. All components are justified by reference to the best observational or experimental evidence from the literature, combined with reference to priority when possible, not by undocumented statements from textbooks, the Web, or elsewhere. 4. The FMC is based on evolving evidence and concepts, revisions are based on enforced rules, and versioning is systematic and historical. The first version of FMC and the foundation of this online version was published in Swanson & Bota (2010). Please cite this reference whenever any part of the FMC is used in any way. This online version of FMC has the following main parts: 1. Thesaurus, which includes an alphabetical list of all concepts and terms used in FMC to date. The preferred terms are in bold. Clicking on each term of the Thesaurus will retrieve its definition, reference, list of synonyms, and a comment form that can be used by registered users. 2. References, which includes an alphabetical list of the literature used to construct FMC. Listed references are associated with the definitions included in the Thesaurus, and PubMed links. 3. Search form that can be used to search for terms defined in FMC, included in their definitions, their abbreviations, and references (search by authors). We strongly recommend to read FMC rules and notations before starting to use the online version. | brain, anatomy, connectivity, thesaurus, | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-07739 | SCR_008003 | 2026-02-07 02:07:24 | 0 | ||||||||||
|
Health Research Funding Resource Report Resource Website |
Health Research Funding (RRID:SCR_007790) | funding resource | Health Research Funding is designed to bring researchers with peer-reviewed, worthwhile, unfunded projects together with patient advocacy organizations and other funding sources. Working together, we hope to foster the funding of new research that will provide hope to millions of people in this country with chronic diseases and disabilities. * We invite researchers with promising projects that have been scored but not funded by the NIH to submit their abstracts. By registering, you will be able to search for information about organizations that fund research and their requests for abstracts. * Researchers with proposals that have been peer-reviewed but not funded by a NHC member patient advocacy organization may also register. The National Health Council (NHC) developed this site with input from the National Institutes of Health (NIH), the nation''s medical research agency. | has parent organization: National Institutes of Health | nif-0000-03130 | SCR_007790 | 2026-02-07 02:07:43 | 0 | |||||||||||
|
BigWig and BigBed Resource Report Resource Website 10+ mentions |
BigWig and BigBed (RRID:SCR_007708) | BigWig and BigBed | software resource | Allow the high-performance display of next-generation sequencing experiment results in the UCSC Genome Browser. |
is listed by: OMICtools is related to: UCSC Genome Browser has parent organization: University of California at Santa Cruz; California; USA |
OMICS_00626 | SCR_007708 | 2026-02-07 02:07:23 | 32 | ||||||||||
|
HighSSR Resource Report Resource Website 1+ mentions |
HighSSR (RRID:SCR_007949) | HighSSR | software resource | Software that predicts microsatellites with Tandem Repeats Finder (TRF). |
is listed by: OMICtools has parent organization: Google Code |
PMID:22954626 | OMICS_00107 | SCR_007949 | highssr - Microsatellites prediction and analysis with next generation sequencing data | 2026-02-07 02:07:23 | 1 | ||||||||
|
GenoTan Resource Report Resource Website 1+ mentions |
GenoTan (RRID:SCR_007935) | GenoTan | software resource | A free software tool to identify length variation of microsatellites from short sequence reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:24135263 | GNU General Public License, v3 | biotools:genotan | https://bio.tools/genotan | SCR_007935 | GenoTan - Genotyping of microsatellite loci | 2026-02-07 02:07:41 | 1 | |||||
|
RSEG Resource Report Resource Website 10+ mentions |
RSEG (RRID:SCR_007695) | RSEG | software resource | Software package aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. |
is listed by: OMICtools has parent organization: University of Southern California; Los Angeles; USA |
PMID:21325299 | Free | OMICS_00459 | SCR_007695 | 2026-02-07 02:07:43 | 14 | ||||||||
|
Congress of Neurological Surgeons Resource Report Resource Website 1+ mentions |
Congress of Neurological Surgeons (RRID:SCR_007993) | institution | A professional organization focused on advancing neurosurgery by providing members with the educational and career development opportunities. They have an annual meeting and offer CME opportunities. The Congress of Neurological Surgeons seeks to improve the quality of healthcare through: * The development of educational programs that convey knowledge, enhance self-directed learning and improve patient outcomes. * Advancing the science of medical education. * Promoting original inquiry and the exchange of clinical and scientific evidence. * Public advocacy for the enhancement of quality, safety and access to neurosurgical care. The Congress of Neurological Surgeons seeks to advance the profession of neurosurgery through: * Refining neurosurgical practice based on evidence. * Promoting volunteerism and leadership development within our specialty. * Development of programs to promote safety, quality and efficiency in practice for domestic and international members. |
is parent organization of: University of Neurosurgery Webinar Series is parent organization of: CNS NeuroWIki is parent organization of: Congress of Neurological Surgeons University of Neurosurgery is parent organization of: University of Neurosurgery Video Theatre |
Crossref funder ID: 100005653, Wikidata: Q5160882, ISNI: 0000 0001 1014 951X, nif-0000-06701, grid.453882.0 | https://ror.org/04ddd7237 | SCR_007993 | CNS | 2026-02-07 02:07:44 | 2 | |||||||||
|
HilbertVis Resource Report Resource Website 1+ mentions |
HilbertVis (RRID:SCR_007862) | HilbertVis | software resource | Software tool that allows to display very long data vectors in a space-efficient manner, allowing the user to visually judge the large scale structure and distribution of features simultaneously with the rough shape and intensity of individual features. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Bioinformatics Institute |
DOI:10.1093/bioinformatics/btp152 | OMICS_00627, biotools:hilbertvis | https://bio.tools/hilbertvis https://sources.debian.org/src/r-bioc-hilbertvis/ |
SCR_007862 | 2026-02-07 02:07:43 | 4 |
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